Wall clock time and date at job start Mon Mar 30 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38216 * 120.00279 * 179.76769 * 11 10 9 13 13 C 1.38262 * 119.99258 * 0.51002 * 12 11 10 14 14 C 1.38208 * 120.00504 * 359.74866 * 13 12 11 15 15 C 1.50702 * 120.00296 * 179.97438 * 14 13 12 16 16 H 1.08993 * 109.46807 * 160.02324 * 15 14 13 17 17 O 1.42897 * 109.46856 * 40.01647 * 15 14 13 18 18 C 1.53008 * 109.46665 * 280.01720 * 15 14 13 19 19 C 1.53776 * 113.61314 * 279.13759 * 18 15 14 20 20 C 1.53960 * 87.01692 * 220.04878 * 19 18 15 21 21 C 1.53779 * 113.60991 * 181.52992 * 18 15 14 22 22 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 27 27 H 1.07998 * 120.00324 * 180.23309 * 12 11 10 28 28 H 1.08002 * 119.99498 * 179.72113 * 13 12 11 29 29 H 0.96699 * 114.00213 * 300.00044 * 17 15 14 30 30 H 1.08998 * 112.84845 * 50.33353 * 18 15 14 31 31 H 1.09001 * 113.61460 * 334.56628 * 19 18 15 32 32 H 1.08999 * 113.61435 * 105.47652 * 19 18 15 33 33 H 1.08994 * 113.53807 * 270.80964 * 20 19 18 34 34 H 1.09003 * 113.74499 * 139.94277 * 20 19 18 35 35 H 1.09002 * 113.61313 * 254.52850 * 21 18 15 36 36 H 1.08994 * 113.61887 * 25.43055 * 21 18 15 37 37 H 1.08001 * 119.99942 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5717 -5.2179 -1.2209 13 6 4.0263 -5.7464 -0.0269 14 6 3.5830 -5.2241 1.1734 15 6 4.0781 -5.8006 2.4748 16 1 3.9235 -5.0768 3.2749 17 8 5.4713 -6.0984 2.3643 18 6 3.3059 -7.0831 2.7910 19 6 1.9257 -6.8317 3.4209 20 6 2.2183 -8.0285 4.3440 21 6 3.7114 -7.7334 4.1242 22 6 2.6848 -4.1730 1.1803 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.3115 -3.7603 -2.1467 27 1 3.9178 -5.6263 -2.1589 28 1 4.7276 -6.5677 -0.0323 29 1 5.6831 -6.7375 1.6702 30 1 3.2832 -7.7808 1.9538 31 1 1.8533 -5.8807 3.9486 32 1 1.0955 -7.0007 2.7352 33 1 1.8969 -8.9850 3.9318 34 1 1.8907 -7.8796 5.3730 35 1 4.3207 -8.6294 4.0054 36 1 4.1281 -7.0295 4.8445 37 1 2.3384 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261352754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:23 Heat of formation + Delta-G solvation = -49.568334 kcal Electronic energy + Delta-G solvation = -17411.960188 eV Core-core repulsion = 14731.838124 eV Total energy + Delta-G solvation = -2680.122064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04485 -39.45881 -37.22029 -35.77219 -32.99034 -32.42141 -28.73095 -28.28248 -26.45593 -25.32088 -24.35835 -23.00430 -21.37641 -20.42782 -19.04663 -18.09838 -17.26664 -16.74797 -16.38893 -16.01443 -15.69333 -15.39326 -15.03797 -14.71777 -14.22529 -14.04600 -13.46340 -13.41201 -13.33528 -13.06282 -12.80239 -12.66991 -12.48806 -12.31601 -11.97969 -11.84594 -11.66480 -11.37527 -11.15939 -11.04789 -10.67489 -10.60859 -9.66684 -9.44897 -8.71942 -6.46681 0.44106 0.55110 1.48790 1.57691 1.76529 2.50775 2.85893 3.08654 3.36938 3.54405 3.74943 3.85659 3.93519 4.00024 4.09837 4.14597 4.25533 4.39783 4.46215 4.59962 4.70421 4.83190 4.85865 4.88404 4.95255 4.96484 5.07237 5.10894 5.18006 5.22251 5.33405 5.54364 5.57691 5.65497 5.86065 5.92952 6.09621 6.14217 6.49669 6.79297 7.33524 8.64666 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.005301 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.439368 B = 5281.004308 C = 5556.894357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.034 4.034 3 Si 1.120 2.880 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.605 4.605 8 H 0.042 0.958 9 C 0.041 3.959 10 C -0.062 4.062 11 C -0.144 4.144 12 C -0.110 4.110 13 C -0.129 4.129 14 C -0.110 4.110 15 C 0.167 3.833 16 H 0.089 0.911 17 O -0.562 6.562 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.128 4.128 23 H 0.256 0.744 24 H -0.003 1.003 25 H -0.001 1.001 26 H 0.109 0.891 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.387 0.613 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 -17.672 4.587 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.231 4.231 3 Si 0.941 3.059 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.642 4.642 8 H 0.061 0.939 9 C 0.004 3.996 10 C -0.063 4.063 11 C -0.162 4.162 12 C -0.127 4.127 13 C -0.147 4.147 14 C -0.111 4.111 15 C 0.108 3.892 16 H 0.107 0.893 17 O -0.369 6.369 18 C -0.150 4.150 19 C -0.181 4.181 20 C -0.172 4.172 21 C -0.157 4.157 22 C -0.146 4.146 23 H 0.065 0.935 24 H 0.015 0.985 25 H 0.017 0.983 26 H 0.127 0.873 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.237 0.763 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.634 -15.635 5.078 18.569 hybrid contribution -0.623 -1.509 -0.629 1.750 sum 8.011 -17.145 4.448 19.440 Atomic orbital electron populations 1.70889 1.07800 1.29875 1.48479 1.27451 0.96570 1.06603 0.92491 0.82903 0.74100 0.70967 0.77976 1.19616 1.19710 1.20259 1.22225 0.94139 0.92396 1.55480 0.93925 1.18265 0.93640 0.92808 0.94864 1.20191 0.97143 0.94730 0.94187 1.21147 0.99891 0.98218 0.96938 1.21354 0.96268 0.95583 0.99538 1.21069 1.01242 1.01389 0.91006 1.20660 0.97206 0.95968 0.97220 1.20700 0.80732 0.95358 0.92398 0.89327 1.86584 1.23077 1.66960 1.60287 1.23231 0.96332 0.96546 0.98917 1.22927 0.96649 0.99344 0.99179 1.22853 0.96412 0.98071 0.99882 1.22782 0.96519 1.00738 0.95704 1.20797 0.99528 0.97384 0.96900 0.93468 0.98483 0.98303 0.87283 0.83143 0.82666 0.76340 0.87949 0.91033 0.92231 0.89151 0.90902 0.90077 0.90494 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.65 21.45 0.29 -58.51 16 2 C -0.03 -1.99 5.46 84.65 0.46 -1.53 16 3 Si 1.12 51.68 29.90 68.60 2.05 53.73 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.60 -36.05 9.09 25.60 0.23 -35.82 16 8 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 9 C 0.04 2.27 4.42 29.10 0.13 2.39 16 10 C -0.06 -2.86 5.07 -19.87 -0.10 -2.97 16 11 C -0.14 -5.71 9.70 22.27 0.22 -5.50 16 12 C -0.11 -3.31 10.05 22.27 0.22 -3.09 16 13 C -0.13 -3.49 9.32 22.27 0.21 -3.28 16 14 C -0.11 -3.45 4.95 -19.87 -0.10 -3.55 16 15 C 0.17 4.27 2.96 29.85 0.09 4.36 16 16 H 0.09 2.53 7.84 -2.39 -0.02 2.51 16 17 O -0.56 -13.16 13.01 -148.98 -1.94 -15.10 16 18 C -0.13 -2.68 3.30 -10.27 -0.03 -2.72 16 19 C -0.14 -3.16 7.62 31.18 0.24 -2.92 16 20 C -0.13 -2.27 8.09 31.18 0.25 -2.02 16 21 C -0.12 -2.06 7.47 31.12 0.23 -1.83 16 22 C -0.13 -5.17 9.33 22.27 0.21 -4.96 16 23 H 0.26 16.32 7.22 -92.71 -0.67 15.65 16 24 H 0.00 -0.18 7.96 -2.39 -0.02 -0.20 16 25 H 0.00 -0.07 7.94 -2.39 -0.02 -0.09 16 26 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 27 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.16 2.73 6.79 -2.91 -0.02 2.71 16 29 H 0.39 5.91 7.50 -74.06 -0.56 5.35 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.73 7.99 -2.39 -0.02 1.71 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.10 4.25 8.04 -2.91 -0.02 4.22 16 Total: -1.00 -70.11 308.64 3.25 -66.85 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.59 Total: 16.46 kcal Atomic # 6 Polarization: -65.69 SS G_CDS: 2.26 Total: -63.43 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.29 Total: -58.51 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.94 Total: -15.10 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Total: -70.11 3.25 -66.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.286 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds