Wall clock time and date at job start Mon Mar 30 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47341 * 240.00546 * 3 2 1 5 5 H 1.48503 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47056 * 120.00361 * 3 2 1 7 7 C 1.39939 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00297 * 162.28473 * 7 2 1 9 9 C 1.41400 * 119.99924 * 342.27716 * 7 2 1 10 10 C 1.40726 * 120.24742 * 335.24253 * 9 7 2 11 11 C 1.37597 * 119.74704 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.24954 * 359.97438 * 11 10 9 13 13 C 1.38618 * 120.49977 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.87212 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.46682 * 204.99798 * 14 13 12 16 16 O 1.42894 * 109.47420 * 324.99749 * 14 13 12 17 17 C 1.53000 * 109.46982 * 85.00451 * 14 13 12 18 18 C 1.54264 * 110.03007 * 297.16121 * 17 14 13 19 19 C 1.54888 * 104.19471 * 217.10741 * 18 17 14 20 20 C 1.54885 * 102.75161 * 37.94485 * 19 18 17 21 21 C 1.53878 * 110.03068 * 179.97438 * 17 14 13 22 22 C 1.37640 * 120.24706 * 0.29677 * 13 12 11 23 23 H 0.97003 * 119.99988 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.12514 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.87538 * 179.97438 * 11 10 9 26 26 H 1.08001 * 119.75114 * 180.02562 * 12 11 10 27 27 H 0.96703 * 113.99825 * 60.00720 * 16 14 13 28 28 H 1.08997 * 110.01880 * 58.60680 * 17 14 13 29 29 H 1.08995 * 110.49036 * 335.78677 * 18 17 14 30 30 H 1.09000 * 110.48795 * 98.42901 * 18 17 14 31 31 H 1.08997 * 110.75591 * 279.62816 * 19 18 17 32 32 H 1.09003 * 110.91419 * 156.33289 * 19 18 17 33 33 H 1.08997 * 110.49183 * 203.38075 * 20 19 18 34 34 H 1.09001 * 110.59945 * 80.78576 * 20 19 18 35 35 H 1.09001 * 110.02838 * 238.56663 * 21 17 14 36 36 H 1.09000 * 110.02983 * 359.94688 * 21 17 14 37 37 H 1.07999 * 120.12342 * 179.70660 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0496 -1.2341 -0.2852 9 6 1.3512 -2.4076 0.3717 10 6 0.2229 -2.3647 1.2116 11 6 -0.4079 -3.5345 1.5677 12 6 0.0638 -4.7523 1.1020 13 6 1.1738 -4.8064 0.2734 14 6 1.6741 -6.1377 -0.2251 15 1 2.7352 -6.0611 -0.4626 16 8 1.4829 -7.1279 0.7872 17 6 0.8977 -6.5362 -1.4817 18 6 -0.5966 -6.7175 -1.1443 19 6 -1.0405 -7.9171 -2.0178 20 6 0.1914 -8.8544 -1.9627 21 6 1.3992 -7.8947 -2.0024 22 6 1.8239 -3.6493 -0.0913 23 1 -0.4850 0.8401 0.0004 24 1 -0.1460 -1.4172 1.5758 25 1 -1.2738 -3.5041 2.2125 26 1 -0.4377 -5.6655 1.3863 27 1 0.5599 -7.2498 1.0487 28 1 1.0177 -5.7743 -2.2518 29 1 -0.7237 -6.9481 -0.0866 30 1 -1.1592 -5.8227 -1.4108 31 1 -1.2375 -7.5978 -3.0411 32 1 -1.9168 -8.4055 -1.5917 33 1 0.2040 -9.5190 -2.8265 34 1 0.1930 -9.4317 -1.0382 35 1 1.7613 -7.7918 -3.0254 36 1 2.1963 -8.2694 -1.3603 37 1 2.6913 -3.6942 -0.7331 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261356583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:26 Heat of formation + Delta-G solvation = -57.699300 kcal Electronic energy + Delta-G solvation = -17818.218175 eV Core-core repulsion = 15137.743526 eV Total energy + Delta-G solvation = -2680.474649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.32651 -37.12252 -35.34632 -33.54744 -30.71727 -29.84929 -28.64345 -28.08861 -25.24813 -24.10798 -21.02473 -20.34207 -20.12147 -19.22515 -17.32445 -16.39517 -15.72182 -15.20164 -14.96553 -14.43478 -14.19665 -13.60796 -13.25307 -12.97749 -12.65125 -12.25879 -11.83473 -11.63418 -11.45799 -11.16229 -10.98631 -10.91506 -10.83517 -10.63221 -10.47723 -10.44911 -10.33610 -10.30613 -9.94552 -9.44268 -9.13981 -9.10369 -7.47670 -7.27496 -6.76561 -4.36663 2.78920 2.94373 3.06003 3.08769 3.22319 3.92785 4.57886 4.78863 4.81879 4.97097 5.02178 5.48474 5.60366 5.63988 5.71567 5.80868 5.83499 5.91723 5.96887 6.09505 6.12142 6.23819 6.27321 6.38533 6.43769 6.49840 6.55835 6.70345 6.91250 7.05024 7.22471 7.37355 7.57090 7.85434 8.02090 8.03388 8.13814 8.28278 8.62680 8.88775 8.96520 10.18667 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.005386 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.025975 B = 5197.372780 C = 5294.754369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.111 3.889 10 C -0.162 4.162 11 C -0.106 4.106 12 C -0.228 4.228 13 C -0.091 4.091 14 C 0.158 3.842 15 H 0.094 0.906 16 O -0.561 6.561 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.215 4.215 23 H 0.280 0.720 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.367 0.633 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -9.523 -2.623 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.182 4.182 11 C -0.124 4.124 12 C -0.247 4.247 13 C -0.092 4.092 14 C 0.099 3.901 15 H 0.112 0.888 16 O -0.368 6.368 17 C -0.135 4.135 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.235 4.235 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.216 0.784 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.695 -9.399 -2.699 9.803 hybrid contribution -0.334 1.024 -0.069 1.080 sum -1.029 -8.374 -2.768 8.880 Atomic orbital electron populations 1.69820 1.07574 1.29251 1.35452 1.25888 0.94700 1.01246 0.92221 0.86389 0.80166 0.80302 0.79983 1.19024 1.20359 1.18832 1.19533 0.98049 0.91270 1.40669 0.90548 1.17569 0.91139 0.91889 0.88544 1.21324 0.99281 0.96763 1.00809 1.20638 0.98641 0.93337 0.99805 1.20013 1.00966 0.95863 1.07877 1.19806 0.96610 0.93904 0.98861 1.20748 0.98571 0.84974 0.85781 0.88833 1.86499 1.31794 1.59916 1.58620 1.22407 0.95567 0.97218 0.98317 1.22361 0.95380 0.97977 0.99388 1.22522 0.97363 0.96489 1.00026 1.22335 0.95007 0.97465 1.01106 1.22162 0.98130 0.94839 1.00415 1.20752 1.03505 0.92360 1.06852 0.90874 0.86585 0.89529 0.89830 0.78379 0.90284 0.91730 0.91239 0.91871 0.92052 0.92432 0.91771 0.92472 0.91257 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.97 55.55 0.61 -20.00 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.72 29.59 -169.99 -5.03 13.68 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.47 -12.39 9.05 -37.74 -0.34 -12.73 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 9 C 0.11 2.96 5.57 -106.83 -0.60 2.36 16 10 C -0.16 -4.23 8.70 -38.88 -0.34 -4.57 16 11 C -0.11 -2.46 10.02 -39.66 -0.40 -2.86 16 12 C -0.23 -4.90 8.24 -39.29 -0.32 -5.22 16 13 C -0.09 -1.97 4.79 -104.70 -0.50 -2.47 16 14 C 0.16 2.82 2.87 -27.88 -0.08 2.74 16 15 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 16 O -0.56 -9.67 12.53 -35.23 -0.44 -10.11 16 17 C -0.12 -1.81 2.82 -89.50 -0.25 -2.06 16 18 C -0.11 -1.67 5.06 -25.07 -0.13 -1.79 16 19 C -0.13 -1.53 6.91 -24.74 -0.17 -1.70 16 20 C -0.12 -1.42 6.83 -25.05 -0.17 -1.59 16 21 C -0.12 -1.56 6.23 -25.58 -0.16 -1.72 16 22 C -0.21 -5.23 9.42 -38.87 -0.37 -5.59 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 24 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 25 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.08 1.56 5.57 -52.49 -0.29 1.27 16 27 H 0.37 5.56 5.48 45.56 0.25 5.81 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 0.93 4.60 -51.93 -0.24 0.69 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -27.23 292.66 -9.13 -36.35 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.76 Total: 11.02 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: -3.91 Total: -35.36 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.61 Total: -20.00 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.44 Total: -10.11 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.23 -9.13 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.344 kcal (2) G-P(sol) polarization free energy of solvation -27.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds