Wall clock time and date at job start Mon Mar 30 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47341 * 240.00546 * 3 2 1 5 5 H 1.48503 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47056 * 120.00361 * 3 2 1 7 7 C 1.39939 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00297 * 162.28473 * 7 2 1 9 9 C 1.41400 * 119.99924 * 342.27716 * 7 2 1 10 10 C 1.40726 * 120.24742 * 335.24253 * 9 7 2 11 11 C 1.37597 * 119.74704 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.24954 * 359.97438 * 11 10 9 13 13 C 1.38618 * 120.49977 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.87212 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.46682 * 204.99798 * 14 13 12 16 16 O 1.42894 * 109.47420 * 324.99749 * 14 13 12 17 17 C 1.53000 * 109.46982 * 85.00451 * 14 13 12 18 18 C 1.54264 * 110.03007 * 297.16121 * 17 14 13 19 19 C 1.54888 * 104.19471 * 217.10741 * 18 17 14 20 20 C 1.54885 * 102.75161 * 37.94485 * 19 18 17 21 21 C 1.53878 * 110.03068 * 179.97438 * 17 14 13 22 22 C 1.37640 * 120.24706 * 0.29677 * 13 12 11 23 23 H 0.97003 * 119.99988 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.12514 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.87538 * 179.97438 * 11 10 9 26 26 H 1.08001 * 119.75114 * 180.02562 * 12 11 10 27 27 H 0.96703 * 113.99825 * 60.00720 * 16 14 13 28 28 H 1.08997 * 110.01880 * 58.60680 * 17 14 13 29 29 H 1.08995 * 110.49036 * 335.78677 * 18 17 14 30 30 H 1.09000 * 110.48795 * 98.42901 * 18 17 14 31 31 H 1.08997 * 110.75591 * 279.62816 * 19 18 17 32 32 H 1.09003 * 110.91419 * 156.33289 * 19 18 17 33 33 H 1.08997 * 110.49183 * 203.38075 * 20 19 18 34 34 H 1.09001 * 110.59945 * 80.78576 * 20 19 18 35 35 H 1.09001 * 110.02838 * 238.56663 * 21 17 14 36 36 H 1.09000 * 110.02983 * 359.94688 * 21 17 14 37 37 H 1.07999 * 120.12342 * 179.70660 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0496 -1.2341 -0.2852 9 6 1.3512 -2.4076 0.3717 10 6 0.2229 -2.3647 1.2116 11 6 -0.4079 -3.5345 1.5677 12 6 0.0638 -4.7523 1.1020 13 6 1.1738 -4.8064 0.2734 14 6 1.6741 -6.1377 -0.2251 15 1 2.7352 -6.0611 -0.4626 16 8 1.4829 -7.1279 0.7872 17 6 0.8977 -6.5362 -1.4817 18 6 -0.5966 -6.7175 -1.1443 19 6 -1.0405 -7.9171 -2.0178 20 6 0.1914 -8.8544 -1.9627 21 6 1.3992 -7.8947 -2.0024 22 6 1.8239 -3.6493 -0.0913 23 1 -0.4850 0.8401 0.0004 24 1 -0.1460 -1.4172 1.5758 25 1 -1.2738 -3.5041 2.2125 26 1 -0.4377 -5.6655 1.3863 27 1 0.5599 -7.2498 1.0487 28 1 1.0177 -5.7743 -2.2518 29 1 -0.7237 -6.9481 -0.0866 30 1 -1.1592 -5.8227 -1.4108 31 1 -1.2375 -7.5978 -3.0411 32 1 -1.9168 -8.4055 -1.5917 33 1 0.2040 -9.5190 -2.8265 34 1 0.1930 -9.4317 -1.0382 35 1 1.7613 -7.7918 -3.0254 36 1 2.1963 -8.2694 -1.3603 37 1 2.6913 -3.6942 -0.7331 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261356583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:25 Heat of formation + Delta-G solvation = -72.029627 kcal Electronic energy + Delta-G solvation = -17818.839584 eV Core-core repulsion = 15137.743526 eV Total energy + Delta-G solvation = -2681.096059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74944 -38.76477 -36.68935 -35.39553 -32.29655 -31.73687 -29.87498 -29.35962 -27.16291 -25.55566 -22.72855 -22.03623 -21.34260 -20.49074 -19.11014 -17.85072 -17.24609 -16.70855 -16.45969 -16.12212 -15.67008 -15.04277 -14.75628 -14.36542 -14.12139 -13.91437 -13.49623 -13.31410 -12.92531 -12.76927 -12.58384 -12.35065 -12.12474 -12.01893 -11.90244 -11.82968 -11.52484 -11.48921 -11.31907 -11.24672 -11.01041 -10.66620 -9.38836 -9.13102 -8.64968 -6.36079 0.98657 1.05928 1.36235 1.47436 1.53093 2.19510 2.71085 3.51390 3.63881 3.72249 3.84041 3.91917 4.19663 4.34322 4.46775 4.54664 4.59791 4.65153 4.76048 4.80229 4.90560 4.98483 5.02742 5.09967 5.12128 5.14530 5.28242 5.30415 5.36539 5.51508 5.53498 5.54723 5.68852 5.99969 6.08847 6.17249 6.36633 6.69014 6.80917 6.93446 7.03104 8.32527 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.005386 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.025975 B = 5197.372780 C = 5294.754369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.192 4.192 11 C -0.110 4.110 12 C -0.220 4.220 13 C -0.087 4.087 14 C 0.165 3.835 15 H 0.091 0.909 16 O -0.561 6.561 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.236 4.236 23 H 0.288 0.712 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.378 0.622 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -11.160 -2.813 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.211 4.211 11 C -0.128 4.128 12 C -0.239 4.239 13 C -0.087 4.087 14 C 0.106 3.894 15 H 0.109 0.891 16 O -0.369 6.369 17 C -0.133 4.133 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.255 4.255 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.228 0.772 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.009 -11.058 -2.886 11.473 hybrid contribution -0.283 1.407 0.012 1.435 sum -1.292 -9.652 -2.874 10.153 Atomic orbital electron populations 1.69875 1.08984 1.30535 1.35925 1.26731 0.95479 1.04432 0.91178 0.85279 0.78827 0.75733 0.80023 1.18363 1.19042 1.18607 1.19787 0.98234 0.92668 1.42807 0.90940 1.17937 0.91987 0.93001 0.89362 1.21288 1.00358 0.97161 1.02343 1.20964 0.99023 0.93140 0.99718 1.20410 1.00459 0.96584 1.06466 1.20242 0.95881 0.94967 0.97602 1.20649 0.98717 0.83198 0.86834 0.89081 1.86499 1.32869 1.59122 1.58420 1.22346 0.96142 0.98265 0.96561 1.22361 0.94343 0.98356 1.00284 1.22499 0.98276 0.95370 0.99653 1.22323 0.93512 0.97152 1.02348 1.22130 0.98802 0.93520 1.00695 1.20937 1.04170 0.92854 1.07554 0.90184 0.88408 0.87179 0.86267 0.77160 0.92053 0.91200 0.93493 0.91674 0.90357 0.90557 0.91144 0.91564 0.91542 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.20 10.97 21.83 0.24 -43.96 16 2 C 0.04 1.88 5.14 85.25 0.44 2.32 16 3 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.51 -28.08 9.05 23.46 0.21 -27.87 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 10 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 11 C -0.11 -5.12 10.02 22.22 0.22 -4.89 16 12 C -0.22 -9.18 8.24 22.46 0.19 -8.99 16 13 C -0.09 -3.71 4.79 -19.91 -0.10 -3.80 16 14 C 0.17 5.68 2.87 29.85 0.09 5.77 16 15 H 0.09 3.20 8.04 -2.38 -0.02 3.18 16 16 O -0.56 -17.86 12.53 -148.98 -1.87 -19.72 16 17 C -0.11 -3.39 2.82 -10.07 -0.03 -3.42 16 18 C -0.12 -3.17 5.06 31.67 0.16 -3.01 16 19 C -0.12 -2.55 6.91 31.88 0.22 -2.33 16 20 C -0.12 -2.28 6.83 31.68 0.22 -2.07 16 21 C -0.11 -2.72 6.23 31.34 0.20 -2.52 16 22 C -0.24 -11.78 9.42 22.73 0.21 -11.57 16 23 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 24 H 0.10 5.52 6.18 -2.91 -0.02 5.50 16 25 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.12 4.07 5.57 -2.91 -0.02 4.06 16 27 H 0.38 10.15 5.48 -74.05 -0.41 9.75 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.80 4.60 -2.39 -0.01 1.79 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.64 7.42 -2.39 -0.02 1.62 16 37 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -60.10 292.66 3.17 -56.94 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.66 Total: 33.93 kcal Atomic # 6 Polarization: -70.34 SS G_CDS: 2.11 Total: -68.24 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.24 Total: -43.96 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.87 Total: -19.72 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -60.10 3.17 -56.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.093 kcal (2) G-P(sol) polarization free energy of solvation -60.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds