Wall clock time and date at job start Mon Mar 30 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48501 * 109.47559 * 240.00398 * 3 2 1 5 5 H 1.48503 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47134 * 119.99813 * 3 2 1 7 7 C 1.39945 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 197.86090 * 7 2 1 9 9 C 1.41396 * 119.99663 * 17.85676 * 7 2 1 10 10 C 1.40725 * 120.24545 * 24.36652 * 9 7 2 11 11 C 1.37603 * 119.74730 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24415 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.50138 * 359.72800 * 12 11 10 14 14 C 1.50701 * 119.87406 * 180.30328 * 13 12 11 15 15 H 1.08999 * 109.47281 * 160.25591 * 14 13 12 16 16 O 1.42896 * 109.47388 * 40.24790 * 14 13 12 17 17 C 1.53004 * 109.46803 * 280.25394 * 14 13 12 18 18 C 1.54268 * 110.02888 * 297.16634 * 17 14 13 19 19 C 1.54893 * 104.19456 * 217.10599 * 18 17 14 20 20 C 1.54893 * 102.74811 * 37.94310 * 19 18 17 21 21 C 1.53876 * 110.03228 * 180.02562 * 17 14 13 22 22 C 1.37630 * 120.24855 * 0.55462 * 13 12 11 23 23 H 0.97002 * 119.99915 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.13042 * 0.04817 * 10 9 7 25 25 H 1.07997 * 119.87578 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.74808 * 180.02562 * 12 11 10 27 27 H 0.96701 * 114.00431 * 300.00701 * 16 14 13 28 28 H 1.08997 * 110.02009 * 58.60620 * 17 14 13 29 29 H 1.08991 * 110.49039 * 335.78351 * 18 17 14 30 30 H 1.08994 * 110.48816 * 98.43361 * 18 17 14 31 31 H 1.08994 * 110.75981 * 279.62964 * 19 18 17 32 32 H 1.09000 * 110.75536 * 156.25561 * 19 18 17 33 33 H 1.08996 * 110.48746 * 203.37852 * 20 19 18 34 34 H 1.09004 * 110.59446 * 80.78874 * 20 19 18 35 35 H 1.08996 * 110.03172 * 238.56781 * 21 17 14 36 36 H 1.08997 * 110.03133 * 359.94397 * 21 17 14 37 37 H 1.08004 * 120.12824 * 179.71933 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3766 10 6 0.2206 -2.3616 -1.2120 11 6 -0.4101 -3.5306 -1.5711 12 6 0.0658 -4.7500 -1.1135 13 6 1.1832 -4.8068 -0.2952 14 6 1.6923 -6.1402 0.1885 15 1 2.7303 -6.0397 0.5053 16 8 1.6079 -7.0952 -0.8711 17 6 0.8421 -6.6127 1.3696 18 6 0.9801 -5.6265 2.5479 19 6 0.9700 -6.5322 3.8044 20 6 1.7807 -7.7681 3.3414 21 6 1.3516 -7.9741 1.8746 22 6 1.8263 -3.6498 0.0814 23 1 -0.4850 0.8401 0.0004 24 1 -0.1513 -1.4130 -1.5702 25 1 -1.2784 -3.4984 -2.2124 26 1 -0.4352 -5.6626 -1.4007 27 1 0.7108 -7.2358 -1.2035 28 1 -0.2025 -6.6927 1.0691 29 1 1.9203 -5.0795 2.4795 30 1 0.1367 -4.9364 2.5684 31 1 -0.0489 -6.8154 4.0684 32 1 1.4637 -6.0377 4.6410 33 1 1.5217 -8.6407 3.9410 34 1 2.8508 -7.5692 3.4013 35 1 0.5540 -8.7149 1.8197 36 1 2.2038 -8.2986 1.2776 37 1 2.6941 -3.6961 0.7228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261356584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:27 Heat of formation + Delta-G solvation = -61.333074 kcal Electronic energy + Delta-G solvation = -17787.556935 eV Core-core repulsion = 15106.924713 eV Total energy + Delta-G solvation = -2680.632221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.09950 -37.11628 -35.62563 -33.56353 -30.69215 -29.82108 -28.50427 -28.05550 -25.26566 -23.95089 -20.91260 -20.46309 -20.12412 -19.37799 -17.30952 -16.13633 -15.66979 -15.32013 -14.82398 -14.57150 -14.18292 -13.51653 -13.12008 -12.95353 -12.75934 -12.29669 -11.80573 -11.61298 -11.47881 -11.17790 -10.95036 -10.90575 -10.75316 -10.64179 -10.56079 -10.44681 -10.38704 -10.21526 -9.91894 -9.45512 -9.14569 -9.08703 -7.48047 -7.28448 -6.76879 -4.36979 2.78336 2.94513 3.05792 3.08492 3.21956 3.92419 4.56719 4.75999 4.89518 4.97279 5.12467 5.42799 5.68837 5.70383 5.71319 5.85283 5.87383 5.93426 5.99951 6.10378 6.14040 6.27262 6.33902 6.40046 6.40607 6.52008 6.65847 6.75490 6.91599 7.04647 7.22611 7.37411 7.56867 7.85586 8.02170 8.03172 8.13003 8.27831 8.62499 8.88464 8.96371 10.18035 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.006099 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.004633 B = 4589.560080 C = 5122.826044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.163 4.163 11 C -0.105 4.105 12 C -0.233 4.233 13 C -0.090 4.090 14 C 0.159 3.841 15 H 0.093 0.907 16 O -0.564 6.564 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.210 4.210 23 H 0.280 0.720 24 H 0.117 0.883 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.369 0.631 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -8.485 3.820 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.108 3.892 10 C -0.182 4.182 11 C -0.123 4.123 12 C -0.252 4.252 13 C -0.091 4.091 14 C 0.100 3.900 15 H 0.111 0.889 16 O -0.369 6.369 17 C -0.132 4.132 18 C -0.148 4.148 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.230 4.230 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.216 0.784 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.782 -8.346 3.934 9.260 hybrid contribution -0.413 0.953 -0.040 1.039 sum 0.370 -7.394 3.894 8.365 Atomic orbital electron populations 1.69816 1.07582 1.29259 1.35356 1.25890 0.94694 1.01255 0.92219 0.86394 0.80178 0.80314 0.79991 1.18825 1.20359 1.19022 1.19530 0.98087 0.91286 1.40517 0.90545 1.17579 0.91152 0.91929 0.88543 1.21335 0.99260 0.96776 1.00874 1.20629 0.98611 0.93306 0.99782 1.19986 1.00906 0.95912 1.08395 1.19796 0.96500 0.93954 0.98837 1.20867 0.98615 0.85441 0.85076 0.88905 1.86497 1.33651 1.62684 1.54095 1.22411 0.99908 0.94722 0.96202 1.22286 1.02909 0.97013 0.92637 1.22520 0.99732 0.96191 0.97928 1.22360 0.99880 0.97788 0.96190 1.22150 1.00873 0.96824 0.95628 1.20744 1.03471 0.92208 1.06568 0.90865 0.86535 0.89536 0.89972 0.78377 0.91148 0.91076 0.91331 0.91969 0.91919 0.92347 0.91882 0.92485 0.91272 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.95 55.55 0.61 -19.91 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.11 2.92 5.58 -106.82 -0.60 2.33 16 10 C -0.16 -4.24 8.70 -38.87 -0.34 -4.58 16 11 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 12 C -0.23 -5.05 9.33 -39.29 -0.37 -5.42 16 13 C -0.09 -1.95 4.46 -104.70 -0.47 -2.42 16 14 C 0.16 2.83 2.44 -27.88 -0.07 2.77 16 15 H 0.09 1.69 7.97 -51.93 -0.41 1.28 16 16 O -0.56 -9.72 12.63 -35.23 -0.44 -10.17 16 17 C -0.11 -1.76 2.68 -89.50 -0.24 -2.00 16 18 C -0.11 -1.76 5.58 -25.07 -0.14 -1.90 16 19 C -0.13 -1.63 6.91 -24.73 -0.17 -1.80 16 20 C -0.12 -1.50 6.83 -25.10 -0.17 -1.68 16 21 C -0.12 -1.55 6.22 -25.64 -0.16 -1.71 16 22 C -0.21 -5.05 8.77 -38.87 -0.34 -5.39 16 23 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 24 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 25 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.08 1.54 6.77 -52.49 -0.36 1.19 16 27 H 0.37 5.40 7.49 45.56 0.34 5.74 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.20 7.34 -51.93 -0.38 0.82 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.95 7.42 -51.93 -0.39 0.57 16 37 H 0.09 2.07 7.92 -52.48 -0.42 1.66 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -27.25 298.51 -9.12 -36.37 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.86 Total: 11.03 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: -3.89 Total: -35.46 kcal Atomic # 7 Polarization: -20.51 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.44 Total: -10.17 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.25 -9.12 -36.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.963 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds