Wall clock time and date at job start Mon Mar 30 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48501 * 109.47559 * 240.00398 * 3 2 1 5 5 H 1.48503 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47134 * 119.99813 * 3 2 1 7 7 C 1.39945 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 197.86090 * 7 2 1 9 9 C 1.41396 * 119.99663 * 17.85676 * 7 2 1 10 10 C 1.40725 * 120.24545 * 24.36652 * 9 7 2 11 11 C 1.37603 * 119.74730 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24415 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.50138 * 359.72800 * 12 11 10 14 14 C 1.50701 * 119.87406 * 180.30328 * 13 12 11 15 15 H 1.08999 * 109.47281 * 160.25591 * 14 13 12 16 16 O 1.42896 * 109.47388 * 40.24790 * 14 13 12 17 17 C 1.53004 * 109.46803 * 280.25394 * 14 13 12 18 18 C 1.54268 * 110.02888 * 297.16634 * 17 14 13 19 19 C 1.54893 * 104.19456 * 217.10599 * 18 17 14 20 20 C 1.54893 * 102.74811 * 37.94310 * 19 18 17 21 21 C 1.53876 * 110.03228 * 180.02562 * 17 14 13 22 22 C 1.37630 * 120.24855 * 0.55462 * 13 12 11 23 23 H 0.97002 * 119.99915 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.13042 * 0.04817 * 10 9 7 25 25 H 1.07997 * 119.87578 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.74808 * 180.02562 * 12 11 10 27 27 H 0.96701 * 114.00431 * 300.00701 * 16 14 13 28 28 H 1.08997 * 110.02009 * 58.60620 * 17 14 13 29 29 H 1.08991 * 110.49039 * 335.78351 * 18 17 14 30 30 H 1.08994 * 110.48816 * 98.43361 * 18 17 14 31 31 H 1.08994 * 110.75981 * 279.62964 * 19 18 17 32 32 H 1.09000 * 110.75536 * 156.25561 * 19 18 17 33 33 H 1.08996 * 110.48746 * 203.37852 * 20 19 18 34 34 H 1.09004 * 110.59446 * 80.78874 * 20 19 18 35 35 H 1.08996 * 110.03172 * 238.56781 * 21 17 14 36 36 H 1.08997 * 110.03133 * 359.94397 * 21 17 14 37 37 H 1.08004 * 120.12824 * 179.71933 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3766 10 6 0.2206 -2.3616 -1.2120 11 6 -0.4101 -3.5306 -1.5711 12 6 0.0658 -4.7500 -1.1135 13 6 1.1832 -4.8068 -0.2952 14 6 1.6923 -6.1402 0.1885 15 1 2.7303 -6.0397 0.5053 16 8 1.6079 -7.0952 -0.8711 17 6 0.8421 -6.6127 1.3696 18 6 0.9801 -5.6265 2.5479 19 6 0.9700 -6.5322 3.8044 20 6 1.7807 -7.7681 3.3414 21 6 1.3516 -7.9741 1.8746 22 6 1.8263 -3.6498 0.0814 23 1 -0.4850 0.8401 0.0004 24 1 -0.1513 -1.4130 -1.5702 25 1 -1.2784 -3.4984 -2.2124 26 1 -0.4352 -5.6626 -1.4007 27 1 0.7108 -7.2358 -1.2035 28 1 -0.2025 -6.6927 1.0691 29 1 1.9203 -5.0795 2.4795 30 1 0.1367 -4.9364 2.5684 31 1 -0.0489 -6.8154 4.0684 32 1 1.4637 -6.0377 4.6410 33 1 1.5217 -8.6407 3.9410 34 1 2.8508 -7.5692 3.4013 35 1 0.5540 -8.7149 1.8197 36 1 2.2038 -8.2986 1.2776 37 1 2.6941 -3.6961 0.7228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261356584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:27 Heat of formation + Delta-G solvation = -75.852075 kcal Electronic energy + Delta-G solvation = -17788.186526 eV Core-core repulsion = 15106.924713 eV Total energy + Delta-G solvation = -2681.261812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55950 -38.71201 -37.01292 -35.41332 -32.26537 -31.71752 -29.76332 -29.34440 -27.18635 -25.42648 -22.71094 -22.05619 -21.38241 -20.67568 -19.10612 -17.65875 -17.11876 -16.89537 -16.34789 -16.12117 -15.71316 -15.07116 -14.65550 -14.27954 -14.21370 -13.99509 -13.51868 -13.27310 -12.88549 -12.79874 -12.60537 -12.33565 -12.20280 -12.04192 -11.91371 -11.85052 -11.58471 -11.43623 -11.36906 -11.23525 -11.01861 -10.63795 -9.38781 -9.13641 -8.64721 -6.35732 0.98261 1.06886 1.36194 1.47204 1.52929 2.19391 2.70953 3.47379 3.66583 3.75608 3.82976 3.95021 4.17705 4.32801 4.48883 4.59507 4.60958 4.65882 4.75623 4.75794 4.88810 4.93014 5.03040 5.11648 5.12217 5.14091 5.27379 5.29987 5.40394 5.50091 5.51465 5.56467 5.69039 6.00486 6.09303 6.17200 6.37252 6.69443 6.83898 6.93759 7.03569 8.32429 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.006099 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.004633 B = 4589.560080 C = 5122.826044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.193 4.193 11 C -0.110 4.110 12 C -0.229 4.229 13 C -0.086 4.086 14 C 0.167 3.833 15 H 0.088 0.912 16 O -0.566 6.566 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.225 4.225 23 H 0.288 0.712 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.382 0.618 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -10.119 4.292 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.213 4.213 11 C -0.128 4.128 12 C -0.248 4.248 13 C -0.086 4.086 14 C 0.108 3.892 15 H 0.106 0.894 16 O -0.373 6.373 17 C -0.126 4.126 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.245 4.245 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.128 0.872 26 H 0.138 0.862 27 H 0.232 0.768 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.711 -10.003 4.402 10.952 hybrid contribution -0.444 1.341 -0.219 1.429 sum 0.266 -8.663 4.183 9.623 Atomic orbital electron populations 1.69873 1.08983 1.30519 1.35864 1.26726 0.95466 1.04424 0.91199 0.85293 0.78847 0.75790 0.80027 1.18616 1.19067 1.18354 1.19778 0.98261 0.92669 1.42605 0.90937 1.17951 0.91977 0.93089 0.89354 1.21299 1.00363 0.97145 1.02459 1.20948 0.99011 0.93135 0.99712 1.20424 1.00556 0.96732 1.07114 1.20228 0.95766 0.95073 0.97530 1.20755 0.98687 0.83712 0.86053 0.89403 1.86489 1.34964 1.61897 1.53930 1.22343 0.99444 0.95989 0.94855 1.22269 1.00858 0.97247 0.94974 1.22501 1.00772 0.95965 0.96555 1.22359 0.99760 0.98051 0.95610 1.22107 1.01232 0.95340 0.96163 1.20891 1.03965 0.92586 1.07041 0.90191 0.88376 0.87246 0.86231 0.76840 0.91086 0.92839 0.93834 0.90934 0.91218 0.90000 0.91795 0.90753 0.91591 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.08 10.95 21.83 0.24 -43.84 16 2 C 0.04 1.88 5.14 85.26 0.44 2.32 16 3 Si 0.98 38.96 29.60 68.60 2.03 40.99 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.50 -27.86 9.05 23.46 0.21 -27.65 16 8 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 9 C 0.08 4.33 5.58 -21.29 -0.12 4.22 16 10 C -0.19 -10.40 8.70 22.73 0.20 -10.21 16 11 C -0.11 -5.12 10.02 22.22 0.22 -4.90 16 12 C -0.23 -9.63 9.33 22.46 0.21 -9.42 16 13 C -0.09 -3.65 4.46 -19.92 -0.09 -3.74 16 14 C 0.17 5.72 2.44 29.85 0.07 5.79 16 15 H 0.09 3.13 7.97 -2.39 -0.02 3.11 16 16 O -0.57 -17.98 12.63 -148.98 -1.88 -19.86 16 17 C -0.11 -3.13 2.68 -10.07 -0.03 -3.16 16 18 C -0.12 -3.62 5.58 31.67 0.18 -3.44 16 19 C -0.12 -2.87 6.91 31.89 0.22 -2.65 16 20 C -0.12 -2.52 6.83 31.65 0.22 -2.31 16 21 C -0.11 -2.59 6.22 31.30 0.19 -2.40 16 22 C -0.23 -11.15 8.77 22.73 0.20 -10.95 16 23 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 24 H 0.10 5.54 6.16 -2.91 -0.02 5.53 16 25 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.12 4.08 6.77 -2.91 -0.02 4.06 16 27 H 0.38 9.83 7.49 -74.06 -0.55 9.28 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.84 7.34 -2.39 -0.02 1.82 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.61 7.42 -2.39 -0.02 1.59 16 37 H 0.09 4.33 7.92 -2.91 -0.02 4.31 16 Total: -1.00 -60.24 298.51 3.01 -57.23 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.50 Total: 33.96 kcal Atomic # 6 Polarization: -70.60 SS G_CDS: 2.13 Total: -68.48 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.24 Total: -43.84 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.88 Total: -19.86 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -60.24 3.01 -57.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.622 kcal (2) G-P(sol) polarization free energy of solvation -60.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds