Wall clock time and date at job start Mon Mar 30 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 114.00308 * 2 1 4 4 C 1.50699 * 109.67769 * 304.83020 * 3 2 1 5 5 H 1.08007 * 119.99793 * 124.83914 * 4 3 2 6 6 C 1.37871 * 120.00501 * 304.83951 * 4 3 2 7 7 N 1.31520 * 119.99421 * 355.15052 * 6 4 3 8 8 Si 1.86789 * 120.00549 * 175.14902 * 6 4 3 9 9 H 1.48504 * 109.47402 * 270.00324 * 8 6 4 10 10 H 1.48506 * 109.47023 * 30.00096 * 8 6 4 11 11 H 1.48504 * 109.47425 * 149.99764 * 8 6 4 12 12 C 1.53321 * 109.68053 * 184.30988 * 3 2 1 13 13 C 1.52737 * 108.38964 * 310.10948 * 12 3 2 14 14 C 1.50624 * 110.58860 * 308.90085 * 13 12 3 15 15 C 1.38915 * 117.75638 * 197.72552 * 14 13 12 16 16 C 1.37930 * 120.54528 * 180.23671 * 15 14 13 17 17 C 1.38259 * 119.77754 * 0.03994 * 16 15 14 18 18 C 1.50697 * 120.11811 * 179.90311 * 17 16 15 19 19 C 1.37933 * 119.76650 * 359.88008 * 17 16 15 20 20 C 1.37668 * 122.56621 * 17.79288 * 14 13 12 21 21 C 1.50631 * 122.56322 * 359.23532 * 20 14 13 22 22 H 1.09000 * 109.46632 * 54.96928 * 1 2 3 23 23 H 1.09000 * 109.47383 * 174.97182 * 1 2 3 24 24 H 1.09000 * 109.46575 * 294.97054 * 1 2 3 25 25 H 0.97001 * 119.99902 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.67953 * 69.83342 * 12 3 2 27 27 H 1.08997 * 109.67867 * 190.34526 * 12 3 2 28 28 H 1.09001 * 109.24973 * 69.18641 * 13 12 3 29 29 H 1.09000 * 109.25434 * 188.64962 * 13 12 3 30 30 H 1.07999 * 119.72055 * 0.25838 * 15 14 13 31 31 H 1.08004 * 120.11003 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.46911 * 89.99805 * 18 17 16 33 33 H 1.09001 * 109.47233 * 210.00051 * 18 17 16 34 34 H 1.09001 * 109.47156 * 330.00148 * 18 17 16 35 35 H 1.08000 * 119.72556 * 179.97438 * 19 17 16 36 36 H 1.09004 * 109.26244 * 257.53499 * 21 20 14 37 37 H 1.08992 * 109.25301 * 138.09872 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.4764 2.0987 -1.1648 5 1 1.0080 3.0571 -0.9960 6 6 1.5859 1.6010 -2.4459 7 7 2.2399 0.4807 -2.6624 8 14 0.8054 2.5178 -3.8739 9 1 -0.5850 2.0350 -4.0715 10 1 0.7866 3.9728 -3.5771 11 1 1.5940 2.2747 -5.1086 12 6 3.5355 1.1915 -0.1085 13 6 4.0197 0.1911 0.9391 14 6 3.4653 0.5356 2.2966 15 6 4.0843 -0.0212 3.4086 16 6 3.6210 0.2516 4.6788 17 6 2.5311 1.0852 4.8478 18 6 2.0171 1.3867 6.2320 19 6 1.9160 1.6404 3.7451 20 6 2.3827 1.3691 2.4651 21 6 1.6724 2.0198 1.3071 22 1 -0.3632 0.5899 -0.8415 23 1 -0.3634 -1.0237 -0.0901 24 1 -0.3632 0.4338 0.9316 25 1 2.3166 0.1303 -3.5637 26 1 3.8075 0.8410 -1.1041 27 1 3.9902 2.1650 0.0749 28 1 3.6902 -0.8096 0.6597 29 1 5.1087 0.2125 0.9803 30 1 4.9356 -0.6727 3.2774 31 1 4.1079 -0.1848 5.5385 32 1 2.5221 2.2701 6.6226 33 1 0.9437 1.5711 6.1889 34 1 2.2138 0.5369 6.8857 35 1 1.0644 2.2911 3.8778 36 1 1.9804 3.0630 1.2365 37 1 0.5963 1.9739 1.4739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261360025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:51 Heat of formation + Delta-G solvation = -36.164980 kcal Electronic energy + Delta-G solvation = -18431.819114 eV Core-core repulsion = 15752.278263 eV Total energy + Delta-G solvation = -2679.540851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.54129 -37.12656 -33.99201 -32.44483 -31.78220 -30.54416 -28.38336 -26.17291 -25.24113 -24.95035 -21.82780 -21.59877 -20.69067 -18.05334 -16.75230 -15.50531 -15.09677 -14.51002 -14.35994 -13.98931 -13.88113 -13.64584 -13.40831 -12.99386 -12.51134 -12.30948 -12.14587 -11.96763 -11.68923 -11.19125 -11.08024 -10.98479 -10.83569 -10.75084 -10.42394 -10.30842 -9.95875 -9.89189 -9.39416 -8.67777 -8.41672 -8.17518 -7.83448 -7.70593 -5.99540 -4.17315 1.88911 1.94622 3.25958 3.33969 3.36329 4.26144 4.36965 5.18793 5.19767 5.21734 5.46152 5.54603 5.60349 5.64310 5.73522 5.92857 6.01463 6.06843 6.14451 6.31018 6.39979 6.47231 6.57558 6.62228 6.65253 6.72237 6.78842 6.96653 6.97539 7.03722 7.08595 7.26632 7.42054 7.58839 7.60438 7.75188 7.96985 8.25085 8.78753 9.11056 9.55155 11.00376 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038823 B = 0.006812 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.053992 B = 4109.647075 C = 4368.149578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.369 6.369 3 C 0.244 3.756 4 C -0.555 4.555 5 H 0.056 0.944 6 C 0.083 3.917 7 N -0.854 5.854 8 Si 0.883 3.117 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 C -0.094 4.094 13 C -0.078 4.078 14 C -0.059 4.059 15 C -0.126 4.126 16 C -0.135 4.135 17 C -0.105 4.105 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.051 4.051 21 C -0.105 4.105 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.008 0.992 25 H 0.260 0.740 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 0.266 10.732 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.206 3.794 4 C -0.593 4.593 5 H 0.074 0.926 6 C -0.123 4.123 7 N -0.489 5.489 8 Si 0.710 3.290 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 C -0.131 4.131 13 C -0.114 4.114 14 C -0.059 4.059 15 C -0.144 4.144 16 C -0.153 4.153 17 C -0.105 4.105 18 C -0.163 4.163 19 C -0.146 4.146 20 C -0.051 4.051 21 C -0.143 4.143 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.234 -0.037 10.595 10.667 hybrid contribution -0.707 0.696 -0.741 1.238 sum 0.526 0.659 9.855 9.891 Atomic orbital electron populations 1.22191 0.84836 0.99008 0.98429 1.87822 1.16720 1.29835 1.94407 1.18844 0.90627 0.81051 0.88892 1.21447 1.40827 1.05527 0.91526 0.92600 1.24949 0.94284 0.94616 0.98430 1.69993 1.38583 1.19403 1.20943 0.86758 0.79563 0.80387 0.82261 1.20605 1.19878 1.21133 1.21479 0.95696 0.96201 0.99771 1.20484 0.97789 1.01758 0.91409 1.19851 0.94800 0.95590 0.95674 1.21123 1.00339 1.00557 0.92357 1.20750 0.97519 1.00237 0.96753 1.19665 0.96898 0.98949 0.95032 1.20696 1.00775 1.01334 0.93544 1.21027 1.00518 1.01082 0.91995 1.19871 0.94757 0.95993 0.94518 1.21240 0.98737 0.99472 0.94813 0.93492 0.93350 0.97327 0.92992 0.88379 0.93697 0.90296 0.92998 0.86864 0.87097 0.91880 0.92058 0.92159 0.87037 0.91092 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.19 10.33 101.05 1.04 2.24 16 2 O -0.37 -9.32 8.47 -35.23 -0.30 -9.62 16 3 C 0.24 5.91 0.30 -91.74 -0.03 5.88 16 4 C -0.56 -14.55 6.57 -34.44 -0.23 -14.77 16 5 H 0.06 1.46 7.76 -52.48 -0.41 1.05 16 6 C 0.08 2.20 4.93 -17.82 -0.09 2.11 16 7 N -0.85 -23.42 11.01 55.43 0.61 -22.81 16 8 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 C -0.09 -2.19 5.00 -26.70 -0.13 -2.32 16 13 C -0.08 -1.59 5.28 -28.05 -0.15 -1.74 16 14 C -0.06 -1.16 5.68 -104.62 -0.59 -1.76 16 15 C -0.13 -2.14 9.61 -39.44 -0.38 -2.52 16 16 C -0.13 -2.08 9.71 -39.69 -0.39 -2.47 16 17 C -0.11 -1.64 5.87 -104.73 -0.61 -2.25 16 18 C -0.11 -1.25 10.02 36.00 0.36 -0.89 16 19 C -0.13 -2.23 9.27 -39.44 -0.37 -2.60 16 20 C -0.05 -1.02 5.62 -104.62 -0.59 -1.61 16 21 C -0.11 -2.26 4.37 -28.05 -0.12 -2.38 16 22 H 0.05 1.13 6.64 -51.93 -0.34 0.78 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.01 0.18 6.63 -51.93 -0.34 -0.17 16 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.10 2.54 6.21 -51.93 -0.32 2.21 16 27 H 0.04 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.08 1.73 7.73 -51.93 -0.40 1.33 16 29 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 30 H 0.11 1.68 8.05 -52.49 -0.42 1.26 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.11 1.75 8.05 -52.49 -0.42 1.33 16 36 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 37 H 0.06 1.33 6.39 -51.93 -0.33 1.00 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -28.02 293.51 -8.06 -36.07 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.50 Total: 1.54 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -2.27 Total: -25.07 kcal Atomic # 7 Polarization: -23.42 SS G_CDS: 0.61 Total: -22.81 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.30 Total: -9.62 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.02 -8.06 -36.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.091 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds