Wall clock time and date at job start Mon Mar 30 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 114.00308 * 2 1 4 4 C 1.50699 * 109.67769 * 304.83020 * 3 2 1 5 5 H 1.08007 * 119.99793 * 124.83914 * 4 3 2 6 6 C 1.37871 * 120.00501 * 304.83951 * 4 3 2 7 7 N 1.31520 * 119.99421 * 355.15052 * 6 4 3 8 8 Si 1.86789 * 120.00549 * 175.14902 * 6 4 3 9 9 H 1.48504 * 109.47402 * 270.00324 * 8 6 4 10 10 H 1.48506 * 109.47023 * 30.00096 * 8 6 4 11 11 H 1.48504 * 109.47425 * 149.99764 * 8 6 4 12 12 C 1.53321 * 109.68053 * 184.30988 * 3 2 1 13 13 C 1.52737 * 108.38964 * 310.10948 * 12 3 2 14 14 C 1.50624 * 110.58860 * 308.90085 * 13 12 3 15 15 C 1.38915 * 117.75638 * 197.72552 * 14 13 12 16 16 C 1.37930 * 120.54528 * 180.23671 * 15 14 13 17 17 C 1.38259 * 119.77754 * 0.03994 * 16 15 14 18 18 C 1.50697 * 120.11811 * 179.90311 * 17 16 15 19 19 C 1.37933 * 119.76650 * 359.88008 * 17 16 15 20 20 C 1.37668 * 122.56621 * 17.79288 * 14 13 12 21 21 C 1.50631 * 122.56322 * 359.23532 * 20 14 13 22 22 H 1.09000 * 109.46632 * 54.96928 * 1 2 3 23 23 H 1.09000 * 109.47383 * 174.97182 * 1 2 3 24 24 H 1.09000 * 109.46575 * 294.97054 * 1 2 3 25 25 H 0.97001 * 119.99902 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.67953 * 69.83342 * 12 3 2 27 27 H 1.08997 * 109.67867 * 190.34526 * 12 3 2 28 28 H 1.09001 * 109.24973 * 69.18641 * 13 12 3 29 29 H 1.09000 * 109.25434 * 188.64962 * 13 12 3 30 30 H 1.07999 * 119.72055 * 0.25838 * 15 14 13 31 31 H 1.08004 * 120.11003 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.46911 * 89.99805 * 18 17 16 33 33 H 1.09001 * 109.47233 * 210.00051 * 18 17 16 34 34 H 1.09001 * 109.47156 * 330.00148 * 18 17 16 35 35 H 1.08000 * 119.72556 * 179.97438 * 19 17 16 36 36 H 1.09004 * 109.26244 * 257.53499 * 21 20 14 37 37 H 1.08992 * 109.25301 * 138.09872 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.4764 2.0987 -1.1648 5 1 1.0080 3.0571 -0.9960 6 6 1.5859 1.6010 -2.4459 7 7 2.2399 0.4807 -2.6624 8 14 0.8054 2.5178 -3.8739 9 1 -0.5850 2.0350 -4.0715 10 1 0.7866 3.9728 -3.5771 11 1 1.5940 2.2747 -5.1086 12 6 3.5355 1.1915 -0.1085 13 6 4.0197 0.1911 0.9391 14 6 3.4653 0.5356 2.2966 15 6 4.0843 -0.0212 3.4086 16 6 3.6210 0.2516 4.6788 17 6 2.5311 1.0852 4.8478 18 6 2.0171 1.3867 6.2320 19 6 1.9160 1.6404 3.7451 20 6 2.3827 1.3691 2.4651 21 6 1.6724 2.0198 1.3071 22 1 -0.3632 0.5899 -0.8415 23 1 -0.3634 -1.0237 -0.0901 24 1 -0.3632 0.4338 0.9316 25 1 2.3166 0.1303 -3.5637 26 1 3.8075 0.8410 -1.1041 27 1 3.9902 2.1650 0.0749 28 1 3.6902 -0.8096 0.6597 29 1 5.1087 0.2125 0.9803 30 1 4.9356 -0.6727 3.2774 31 1 4.1079 -0.1848 5.5385 32 1 2.5221 2.2701 6.6226 33 1 0.9437 1.5711 6.1889 34 1 2.2138 0.5369 6.8857 35 1 1.0644 2.2911 3.8778 36 1 1.9804 3.0630 1.2365 37 1 0.5963 1.9739 1.4739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:50 Heat of formation + Delta-G solvation = -50.087431 kcal Electronic energy + Delta-G solvation = -18432.422837 eV Core-core repulsion = 15752.278263 eV Total energy + Delta-G solvation = -2680.144574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.01570 -38.79230 -35.55823 -34.41619 -33.25294 -32.00144 -29.98762 -27.55514 -27.10177 -26.67231 -23.44418 -23.00148 -22.23709 -19.69292 -18.70719 -16.99590 -16.73841 -16.13882 -15.95077 -15.74227 -15.44952 -15.23212 -14.92184 -14.35685 -14.03078 -13.78928 -13.59591 -13.34682 -13.19750 -12.84632 -12.77198 -12.65142 -12.59907 -12.37088 -12.02240 -11.89423 -11.68602 -11.64963 -11.13534 -10.63089 -10.34855 -9.71205 -9.49452 -9.10429 -8.01474 -6.25453 0.57823 0.61323 1.39570 1.42427 1.50391 2.42086 2.93237 3.16975 3.69792 3.99356 4.03651 4.17969 4.24993 4.40703 4.49769 4.56119 4.71089 4.71324 4.78600 4.87658 4.91076 4.92890 4.95755 4.98452 5.07674 5.16584 5.19497 5.34381 5.40575 5.50056 5.57802 5.68354 5.76836 5.78489 5.98100 6.08960 6.22736 6.33189 6.77939 7.18990 7.51663 8.96952 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038823 B = 0.006812 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.053992 B = 4109.647075 C = 4368.149578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.388 6.388 3 C 0.236 3.764 4 C -0.568 4.568 5 H 0.048 0.952 6 C 0.043 3.957 7 N -0.880 5.880 8 Si 0.939 3.061 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.283 1.283 12 C -0.092 4.092 13 C -0.066 4.066 14 C -0.087 4.087 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.077 4.077 21 C -0.096 4.096 22 H 0.027 0.973 23 H 0.065 0.935 24 H 0.024 0.976 25 H 0.259 0.741 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 0.288 13.106 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.307 6.307 3 C 0.198 3.802 4 C -0.606 4.606 5 H 0.067 0.933 6 C -0.161 4.161 7 N -0.516 5.516 8 Si 0.765 3.235 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.209 1.209 12 C -0.130 4.130 13 C -0.103 4.103 14 C -0.087 4.087 15 C -0.146 4.146 16 C -0.148 4.148 17 C -0.100 4.100 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.077 4.077 21 C -0.133 4.133 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.229 -0.006 12.976 13.034 hybrid contribution -0.707 0.689 -1.399 1.712 sum 0.522 0.683 11.577 11.609 Atomic orbital electron populations 1.22236 0.83843 0.99858 0.98369 1.87780 1.17934 1.30455 1.94555 1.18906 0.90833 0.80741 0.89676 1.21725 1.40698 1.05471 0.92728 0.93334 1.25563 0.94661 0.95318 1.00528 1.70121 1.39598 1.20659 1.21209 0.85869 0.78707 0.79359 0.79538 1.20320 1.19525 1.20897 1.21347 0.95697 0.96811 0.99152 1.20297 0.98963 0.99530 0.91551 1.19839 0.95828 0.97254 0.95740 1.21357 1.00661 1.00317 0.92240 1.21186 0.97098 0.99342 0.97167 1.20138 0.96166 0.97433 0.96313 1.20769 1.01281 1.02819 0.91303 1.21195 1.01173 1.01650 0.91614 1.19825 0.95607 0.97345 0.94893 1.21023 0.98819 0.98994 0.94472 0.95446 0.91682 0.95758 0.93175 0.91441 0.93855 0.92373 0.91007 0.84881 0.83575 0.90332 0.91348 0.90205 0.85904 0.91677 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.47 10.33 113.37 1.17 3.64 16 2 O -0.39 -20.02 8.47 -148.98 -1.26 -21.28 16 3 C 0.24 11.75 0.30 -11.52 0.00 11.75 16 4 C -0.57 -30.54 6.57 25.60 0.17 -30.37 16 5 H 0.05 2.60 7.76 -2.91 -0.02 2.58 16 6 C 0.04 2.30 4.93 84.65 0.42 2.72 16 7 N -0.88 -49.61 11.01 21.45 0.24 -49.37 16 8 Si 0.94 42.74 29.54 68.60 2.03 44.76 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C -0.09 -4.45 5.00 30.61 0.15 -4.30 16 13 C -0.07 -2.76 5.28 29.74 0.16 -2.61 16 14 C -0.09 -3.34 5.68 -19.86 -0.11 -3.46 16 15 C -0.13 -4.03 9.61 22.36 0.21 -3.82 16 16 C -0.13 -3.52 9.71 22.20 0.22 -3.31 16 17 C -0.10 -2.77 5.87 -19.93 -0.12 -2.89 16 18 C -0.11 -2.00 10.02 71.23 0.71 -1.29 16 19 C -0.14 -4.56 9.27 22.36 0.21 -4.35 16 20 C -0.08 -3.02 5.62 -19.86 -0.11 -3.13 16 21 C -0.10 -4.17 4.37 29.74 0.13 -4.04 16 22 H 0.03 1.33 6.64 -2.39 -0.02 1.32 16 23 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.02 1.01 6.63 -2.39 -0.02 0.99 16 25 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 26 H 0.07 3.64 6.21 -2.39 -0.01 3.63 16 27 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 28 H 0.06 2.62 7.73 -2.39 -0.02 2.60 16 29 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 30 H 0.13 3.57 8.05 -2.91 -0.02 3.55 16 31 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.12 3.64 8.05 -2.91 -0.02 3.62 16 36 H 0.06 2.81 8.11 -2.39 -0.02 2.79 16 37 H 0.06 2.58 6.39 -2.39 -0.02 2.57 16 Total: -1.00 -60.91 293.51 5.25 -55.66 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.04 Total: 15.67 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 3.20 Total: -45.44 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.24 Total: -49.37 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.26 Total: -21.28 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -60.91 5.25 -55.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.573 kcal (2) G-P(sol) polarization free energy of solvation -60.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds