Wall clock time and date at job start Mon Mar 30 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47152 * 300.00008 * 3 2 1 6 6 H 1.48496 * 109.47152 * 60.00196 * 3 2 1 7 7 C 1.39947 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00300 * 195.47102 * 7 2 1 9 9 C 1.41400 * 119.99343 * 15.47911 * 7 2 1 10 10 C 1.40727 * 120.24829 * 25.12260 * 9 7 2 11 11 C 1.37597 * 119.74452 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24901 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50159 * 359.68162 * 12 11 10 14 14 C 1.37640 * 120.24577 * 0.59785 * 13 12 11 15 15 C 1.50697 * 120.12637 * 179.70715 * 14 13 12 16 16 H 1.09001 * 109.46722 * 214.72445 * 15 14 13 17 17 O 1.42907 * 109.47129 * 334.72246 * 15 14 13 18 18 C 1.52992 * 109.47733 * 94.72341 * 15 14 13 19 19 C 1.54264 * 110.03252 * 297.90910 * 18 15 14 20 20 C 1.54961 * 104.15968 * 217.13353 * 19 18 15 21 21 C 1.54889 * 102.77801 * 37.88784 * 20 19 18 22 22 C 1.53872 * 110.03662 * 180.68876 * 18 15 14 23 23 H 0.97005 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.12717 * 359.95315 * 10 9 7 25 25 H 1.08006 * 119.87711 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.74833 * 179.97438 * 12 11 10 27 27 H 1.07996 * 119.87847 * 180.30740 * 13 12 11 28 28 H 0.96696 * 114.00138 * 59.99834 * 17 15 14 29 29 H 1.09006 * 110.01451 * 59.29572 * 18 15 14 30 30 H 1.09003 * 110.48760 * 335.78209 * 19 18 15 31 31 H 1.09003 * 110.49152 * 98.42625 * 19 18 15 32 32 H 1.09002 * 110.72282 * 279.57281 * 20 19 18 33 33 H 1.09005 * 110.92748 * 156.29210 * 20 19 18 34 34 H 1.09000 * 110.48803 * 203.40666 * 21 20 19 35 35 H 1.08995 * 110.60094 * 80.81930 * 21 20 19 36 36 H 1.08994 * 110.03527 * 238.57339 * 22 18 15 37 37 H 1.09000 * 110.02761 * 359.95254 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0586 -1.2288 0.2500 9 6 1.3394 -2.4144 -0.3258 10 6 0.1876 -2.3883 -1.1339 11 6 -0.4546 -3.5646 -1.4454 12 6 0.0288 -4.7725 -0.9659 13 6 1.1659 -4.8107 -0.1741 14 6 1.8211 -3.6459 0.1549 15 6 3.0533 -3.6900 1.0213 16 1 3.0804 -2.8068 1.6596 17 8 3.0220 -4.8647 1.8345 18 6 4.2998 -3.7167 0.1346 19 6 4.3007 -4.9892 -0.7375 20 6 5.7915 -5.4082 -0.7950 21 6 6.2927 -5.0882 0.6351 22 6 5.5659 -3.7792 1.0067 23 1 -0.4850 0.8401 0.0004 24 1 -0.1910 -1.4485 -1.5078 25 1 -1.3390 -3.5470 -2.0651 26 1 -0.4818 -5.6909 -1.2151 27 1 1.5364 -5.7576 0.1898 28 1 2.9969 -5.6904 1.3320 29 1 4.3260 -2.8300 -0.4989 30 1 3.7024 -5.7718 -0.2710 31 1 3.9273 -4.7670 -1.7371 32 1 6.3303 -4.8160 -1.5347 33 1 5.8888 -6.4725 -1.0093 34 1 7.3724 -4.9386 0.6364 35 1 6.0183 -5.8861 1.3252 36 1 6.2071 -2.9234 0.7960 37 1 5.2924 -3.7897 2.0617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261360267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:56 Heat of formation + Delta-G solvation = -56.781032 kcal Electronic energy + Delta-G solvation = -18308.884373 eV Core-core repulsion = 15628.449543 eV Total energy + Delta-G solvation = -2680.434830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17594 -37.04588 -35.08756 -33.63962 -30.86195 -29.37329 -28.56424 -28.02927 -25.38567 -23.87511 -20.98191 -20.39547 -19.79532 -18.95081 -17.41894 -16.20144 -15.68048 -15.42730 -14.70966 -14.28341 -13.99167 -13.53036 -13.07835 -12.80206 -12.56912 -12.38608 -11.75044 -11.51119 -11.29211 -11.09142 -11.06920 -10.80033 -10.71266 -10.66187 -10.50843 -10.31353 -10.20027 -10.05588 -9.69900 -9.47219 -9.22777 -8.86184 -7.37712 -7.32035 -6.76343 -4.39581 2.75148 2.97165 3.05998 3.10484 3.21541 3.90838 4.60956 4.96130 5.00097 5.12339 5.22906 5.60867 5.77187 5.82136 5.83565 5.94231 6.03667 6.10534 6.14026 6.17891 6.30005 6.38034 6.42004 6.50870 6.54364 6.63414 6.75024 6.81284 6.95778 7.07395 7.26054 7.39355 7.58781 7.87297 8.00177 8.08252 8.24056 8.38191 8.60730 8.87297 8.95406 10.16970 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.009211 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.205911 B = 3039.146591 C = 4036.234086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.162 4.162 11 C -0.108 4.108 12 C -0.240 4.240 13 C -0.084 4.084 14 C -0.220 4.220 15 C 0.174 3.826 16 H 0.101 0.899 17 O -0.566 6.566 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.118 4.118 23 H 0.279 0.721 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.360 0.640 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 -4.847 -0.917 9.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.181 4.181 11 C -0.127 4.127 12 C -0.259 4.259 13 C -0.102 4.102 14 C -0.222 4.222 15 C 0.116 3.884 16 H 0.119 0.881 17 O -0.372 6.372 18 C -0.135 4.135 19 C -0.149 4.149 20 C -0.163 4.163 21 C -0.159 4.159 22 C -0.156 4.156 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.396 -4.226 -0.420 8.528 hybrid contribution 0.100 0.463 -0.540 0.718 sum 7.496 -3.763 -0.960 8.442 Atomic orbital electron populations 1.69827 1.07557 1.29023 1.35481 1.25908 0.94712 1.01285 0.92261 0.86317 0.81044 0.81188 0.78570 1.18326 1.19765 1.19984 1.19609 0.97349 0.90833 1.41298 0.90174 1.17356 0.91196 0.91282 0.88533 1.21373 0.98899 0.96739 1.01117 1.20694 0.98543 0.93485 0.99973 1.20324 1.00838 0.96190 1.08581 1.20174 0.95983 0.95731 0.98303 1.20151 1.01391 0.94009 1.06633 1.20498 0.90411 0.86960 0.90539 0.88140 1.86536 1.97008 1.16148 1.37545 1.22418 0.94972 0.98967 0.97115 1.22312 0.95238 0.97263 1.00105 1.22526 0.96778 1.00122 0.96913 1.22323 0.98884 0.98034 0.96629 1.22151 0.96125 0.96782 1.00533 0.90962 0.86273 0.89632 0.89722 0.89753 0.79235 0.89920 0.92155 0.91664 0.91969 0.92292 0.92607 0.91897 0.92637 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 10.86 55.55 0.60 -19.69 16 2 C 0.08 1.87 5.19 -17.34 -0.09 1.78 16 3 Si 0.90 18.41 29.59 -169.99 -5.03 13.38 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -11.69 8.14 -37.74 -0.31 -12.00 16 8 H 0.08 1.94 6.10 -52.49 -0.32 1.62 16 9 C 0.12 3.05 5.58 -106.82 -0.60 2.45 16 10 C -0.16 -4.18 8.69 -38.88 -0.34 -4.52 16 11 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.24 -5.37 10.05 -39.29 -0.39 -5.76 16 13 C -0.08 -1.83 8.41 -39.66 -0.33 -2.16 16 14 C -0.22 -5.08 4.71 -103.91 -0.49 -5.57 16 15 C 0.17 3.54 2.18 -27.89 -0.06 3.48 16 16 H 0.10 2.24 7.05 -51.93 -0.37 1.88 16 17 O -0.57 -10.81 12.36 -35.23 -0.44 -11.25 16 18 C -0.12 -2.03 2.70 -89.51 -0.24 -2.27 16 19 C -0.11 -1.75 5.34 -25.03 -0.13 -1.89 16 20 C -0.13 -1.65 6.91 -24.70 -0.17 -1.82 16 21 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 22 C -0.12 -1.80 6.22 -25.62 -0.16 -1.96 16 23 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 24 H 0.12 3.18 6.12 -52.49 -0.32 2.86 16 25 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 26 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.08 1.61 6.00 -52.49 -0.31 1.29 16 28 H 0.36 5.92 5.31 45.56 0.24 6.16 16 29 H 0.08 1.59 7.37 -51.93 -0.38 1.21 16 30 H 0.06 0.92 5.08 -51.93 -0.26 0.66 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.10 7.40 -51.93 -0.38 0.71 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -26.67 288.77 -9.02 -35.69 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.63 Total: 12.47 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: -3.88 Total: -34.95 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.60 Total: -19.69 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.44 Total: -11.25 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.67 -9.02 -35.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.094 kcal (2) G-P(sol) polarization free energy of solvation -26.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds