Wall clock time and date at job start Mon Mar 30 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47152 * 300.00008 * 3 2 1 6 6 H 1.48496 * 109.47152 * 60.00196 * 3 2 1 7 7 C 1.39947 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00300 * 195.47102 * 7 2 1 9 9 C 1.41400 * 119.99343 * 15.47911 * 7 2 1 10 10 C 1.40727 * 120.24829 * 25.12260 * 9 7 2 11 11 C 1.37597 * 119.74452 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24901 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50159 * 359.68162 * 12 11 10 14 14 C 1.37640 * 120.24577 * 0.59785 * 13 12 11 15 15 C 1.50697 * 120.12637 * 179.70715 * 14 13 12 16 16 H 1.09001 * 109.46722 * 214.72445 * 15 14 13 17 17 O 1.42907 * 109.47129 * 334.72246 * 15 14 13 18 18 C 1.52992 * 109.47733 * 94.72341 * 15 14 13 19 19 C 1.54264 * 110.03252 * 297.90910 * 18 15 14 20 20 C 1.54961 * 104.15968 * 217.13353 * 19 18 15 21 21 C 1.54889 * 102.77801 * 37.88784 * 20 19 18 22 22 C 1.53872 * 110.03662 * 180.68876 * 18 15 14 23 23 H 0.97005 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.12717 * 359.95315 * 10 9 7 25 25 H 1.08006 * 119.87711 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.74833 * 179.97438 * 12 11 10 27 27 H 1.07996 * 119.87847 * 180.30740 * 13 12 11 28 28 H 0.96696 * 114.00138 * 59.99834 * 17 15 14 29 29 H 1.09006 * 110.01451 * 59.29572 * 18 15 14 30 30 H 1.09003 * 110.48760 * 335.78209 * 19 18 15 31 31 H 1.09003 * 110.49152 * 98.42625 * 19 18 15 32 32 H 1.09002 * 110.72282 * 279.57281 * 20 19 18 33 33 H 1.09005 * 110.92748 * 156.29210 * 20 19 18 34 34 H 1.09000 * 110.48803 * 203.40666 * 21 20 19 35 35 H 1.08995 * 110.60094 * 80.81930 * 21 20 19 36 36 H 1.08994 * 110.03527 * 238.57339 * 22 18 15 37 37 H 1.09000 * 110.02761 * 359.95254 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0586 -1.2288 0.2500 9 6 1.3394 -2.4144 -0.3258 10 6 0.1876 -2.3883 -1.1339 11 6 -0.4546 -3.5646 -1.4454 12 6 0.0288 -4.7725 -0.9659 13 6 1.1659 -4.8107 -0.1741 14 6 1.8211 -3.6459 0.1549 15 6 3.0533 -3.6900 1.0213 16 1 3.0804 -2.8068 1.6596 17 8 3.0220 -4.8647 1.8345 18 6 4.2998 -3.7167 0.1346 19 6 4.3007 -4.9892 -0.7375 20 6 5.7915 -5.4082 -0.7950 21 6 6.2927 -5.0882 0.6351 22 6 5.5659 -3.7792 1.0067 23 1 -0.4850 0.8401 0.0004 24 1 -0.1910 -1.4485 -1.5078 25 1 -1.3390 -3.5470 -2.0651 26 1 -0.4818 -5.6909 -1.2151 27 1 1.5364 -5.7576 0.1898 28 1 2.9969 -5.6904 1.3320 29 1 4.3260 -2.8300 -0.4989 30 1 3.7024 -5.7718 -0.2710 31 1 3.9273 -4.7670 -1.7371 32 1 6.3303 -4.8160 -1.5347 33 1 5.8888 -6.4725 -1.0093 34 1 7.3724 -4.9386 0.6364 35 1 6.0183 -5.8861 1.3252 36 1 6.2071 -2.9234 0.7960 37 1 5.2924 -3.7897 2.0617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:56 Heat of formation + Delta-G solvation = -70.576754 kcal Electronic energy + Delta-G solvation = -18309.482600 eV Core-core repulsion = 15628.449543 eV Total energy + Delta-G solvation = -2681.033057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72029 -38.65784 -36.55333 -35.48466 -32.55283 -31.18757 -29.92335 -29.34106 -27.22707 -25.43982 -22.78632 -21.80703 -21.23878 -20.38274 -19.25256 -17.79358 -17.19962 -16.98403 -16.24535 -15.88178 -15.59410 -15.03441 -14.58237 -14.40375 -14.13073 -13.93551 -13.50211 -13.11261 -12.92292 -12.76333 -12.66966 -12.26186 -12.14372 -11.88636 -11.84905 -11.82090 -11.47905 -11.42607 -11.31939 -11.13805 -11.06108 -10.51900 -9.25919 -9.15106 -8.60624 -6.32147 0.97343 1.12919 1.36670 1.49994 1.51621 2.19380 2.75674 3.59995 3.71828 3.78157 3.89990 3.97827 4.36818 4.41442 4.53449 4.59920 4.65678 4.68426 4.81115 4.86642 4.91036 4.97594 5.06953 5.14642 5.17169 5.24979 5.31058 5.37319 5.43273 5.53288 5.56142 5.61294 5.74375 6.03015 6.15612 6.21034 6.39506 6.72089 6.87403 7.01505 7.07906 8.35112 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.009211 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.205911 B = 3039.146591 C = 4036.234086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.487 4.487 8 H 0.080 0.920 9 C 0.087 3.913 10 C -0.193 4.193 11 C -0.118 4.118 12 C -0.240 4.240 13 C -0.087 4.087 14 C -0.224 4.224 15 C 0.182 3.818 16 H 0.073 0.927 17 O -0.567 6.567 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.117 4.117 23 H 0.285 0.715 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.373 0.627 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 -6.350 -0.840 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.517 4.517 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.136 4.136 12 C -0.259 4.259 13 C -0.105 4.105 14 C -0.225 4.225 15 C 0.124 3.876 16 H 0.091 0.909 17 O -0.375 6.375 18 C -0.131 4.131 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.155 4.155 23 H 0.096 0.904 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.223 0.777 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.933 -5.753 -0.347 10.631 hybrid contribution -0.444 0.812 -0.552 1.078 sum 8.490 -4.941 -0.899 9.864 Atomic orbital electron populations 1.69895 1.08974 1.30150 1.36534 1.26732 0.95430 1.04456 0.91491 0.85276 0.79711 0.76763 0.78763 1.17865 1.19108 1.19366 1.19815 0.97512 0.91766 1.42558 0.90183 1.17720 0.91793 0.92675 0.89314 1.21364 1.00186 0.96932 1.02763 1.20962 0.99058 0.93396 1.00177 1.20732 1.00796 0.96777 1.07572 1.20554 0.95593 0.96655 0.97724 1.20523 1.02136 0.93686 1.06194 1.20252 0.90715 0.86614 0.90037 0.90907 1.86512 1.96997 1.16406 1.37606 1.22295 0.94738 0.99086 0.96937 1.22296 0.97582 0.96295 0.98669 1.22502 0.94394 1.01540 0.97132 1.22302 0.99787 0.96572 0.96499 1.22130 0.95237 0.98710 0.99375 0.90427 0.88255 0.87800 0.86654 0.86440 0.77651 0.92467 0.91467 0.93283 0.91628 0.90056 0.90585 0.91165 0.92159 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.06 10.86 21.83 0.24 -43.82 16 2 C 0.03 1.68 5.19 85.26 0.44 2.12 16 3 Si 0.97 38.61 29.59 68.60 2.03 40.64 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.49 -25.70 8.14 23.46 0.19 -25.51 16 8 H 0.08 4.06 6.10 -2.92 -0.02 4.04 16 9 C 0.09 4.63 5.58 -21.29 -0.12 4.52 16 10 C -0.19 -10.31 8.69 22.73 0.20 -10.11 16 11 C -0.12 -5.56 10.02 22.22 0.22 -5.34 16 12 C -0.24 -10.32 10.05 22.46 0.23 -10.10 16 13 C -0.09 -3.69 8.41 22.22 0.19 -3.50 16 14 C -0.22 -10.39 4.71 -19.41 -0.09 -10.48 16 15 C 0.18 7.42 2.18 29.84 0.07 7.49 16 16 H 0.07 3.37 7.05 -2.39 -0.02 3.35 16 17 O -0.57 -20.79 12.36 -148.98 -1.84 -22.64 16 18 C -0.11 -3.87 2.70 -10.07 -0.03 -3.89 16 19 C -0.11 -3.28 5.34 31.69 0.17 -3.11 16 20 C -0.12 -2.72 6.91 31.91 0.22 -2.50 16 21 C -0.11 -2.59 6.83 31.67 0.22 -2.38 16 22 C -0.12 -3.39 6.22 31.32 0.19 -3.19 16 23 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 24 H 0.10 5.60 6.12 -2.91 -0.02 5.58 16 25 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 26 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.12 4.10 6.00 -2.91 -0.02 4.09 16 28 H 0.37 11.24 5.31 -74.06 -0.39 10.85 16 29 H 0.06 2.26 7.37 -2.38 -0.02 2.24 16 30 H 0.07 1.87 5.08 -2.39 -0.01 1.86 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.84 7.40 -2.39 -0.02 1.82 16 Total: -1.00 -58.69 288.77 3.20 -55.49 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.68 Total: 36.30 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 2.09 Total: -65.98 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.24 Total: -43.82 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.84 Total: -22.64 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -58.69 3.20 -55.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.089 kcal (2) G-P(sol) polarization free energy of solvation -58.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds