Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 120.00606 * 2 1 4 4 C 1.38207 * 120.00607 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99994 * 359.85455 * 4 3 2 6 6 C 1.38225 * 119.99585 * 0.39914 * 5 4 3 7 7 C 1.50697 * 119.99916 * 179.80985 * 6 5 4 8 8 H 1.09002 * 110.55178 * 159.02547 * 7 6 5 9 9 C 1.54998 * 110.61948 * 281.90433 * 7 6 5 10 10 C 1.54809 * 102.09123 * 155.68159 * 9 7 6 11 11 C 1.54094 * 104.18952 * 339.11741 * 10 9 7 12 12 C 1.52999 * 109.87954 * 238.54445 * 11 10 9 13 13 C 1.50705 * 109.87444 * 117.54375 * 11 10 9 14 14 H 1.07991 * 120.00499 * 0.02562 * 13 11 10 15 15 C 1.37887 * 119.99781 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99543 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 119.99842 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47263 * 90.00601 * 17 15 13 19 19 H 1.48501 * 109.46901 * 210.00183 * 17 15 13 20 20 H 1.48498 * 109.47555 * 330.00075 * 17 15 13 21 21 O 1.43741 * 107.29615 * 357.97072 * 11 10 9 22 22 C 1.38217 * 119.99504 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46759 * 269.98089 * 1 2 3 24 24 H 1.08999 * 109.46789 * 29.98031 * 1 2 3 25 25 H 1.09000 * 109.47103 * 149.98002 * 1 2 3 26 26 H 1.07998 * 119.99565 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.00389 * 180.02562 * 4 3 2 28 28 H 1.07993 * 120.00492 * 180.20585 * 5 4 3 29 29 H 1.08995 * 110.90427 * 273.88214 * 9 7 6 30 30 H 1.08997 * 110.90503 * 37.48164 * 9 7 6 31 31 H 1.09003 * 110.48765 * 97.79818 * 10 9 7 32 32 H 1.09000 * 110.48379 * 220.44101 * 10 9 7 33 33 H 1.09002 * 109.46976 * 60.00317 * 12 11 10 34 34 H 1.09001 * 109.47056 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47312 * 300.00312 * 12 11 10 36 36 H 0.97004 * 119.99204 * 180.02562 * 16 15 13 37 37 H 1.07994 * 120.00388 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0001 0.0041 6 6 3.5806 -1.1972 -0.0012 7 6 4.3340 -2.5023 -0.0016 8 1 3.6987 -3.3110 0.3595 9 6 4.8711 -2.8220 -1.4200 10 6 6.0683 -3.7536 -1.1110 11 6 6.4193 -3.4433 0.3570 12 6 7.8702 -2.9677 0.4557 13 6 6.2259 -4.6763 1.2016 14 1 5.8870 -5.5951 0.7464 15 6 6.4826 -4.6317 2.5557 16 7 6.8957 -3.5129 3.1100 17 14 6.2435 -6.1601 3.6025 18 1 7.5085 -6.9369 3.6405 19 1 5.8661 -5.7610 4.9822 20 1 5.1658 -6.9975 3.0172 21 8 5.5324 -2.4015 0.7975 22 6 2.1980 -1.1971 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6585 2.1325 -0.0004 27 1 4.1205 2.1325 0.0010 28 1 5.3517 -0.0002 0.0079 29 1 4.1179 -3.3403 -2.0134 30 1 5.2042 -1.9145 -1.9234 31 1 5.7772 -4.7982 -1.2211 32 1 6.9108 -3.5207 -1.7622 33 1 7.9984 -2.0659 -0.1431 34 1 8.1114 -2.7507 1.4962 35 1 8.5344 -3.7480 0.0842 36 1 7.0766 -3.4816 4.0625 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309198510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -31.881296 kcal Electronic energy + Delta-G solvation = -18003.482025 eV Core-core repulsion = 15324.126929 eV Total energy + Delta-G solvation = -2679.355096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34423 -37.87458 -33.34768 -32.26786 -31.24412 -30.90642 -28.95367 -26.61952 -25.22264 -24.63117 -21.90135 -21.49319 -19.55111 -19.30798 -16.44968 -16.20249 -15.53362 -14.85094 -14.61340 -14.07793 -13.64289 -13.62635 -13.32317 -12.75560 -12.62581 -12.32639 -12.08195 -11.88173 -11.62267 -11.23346 -11.04323 -10.89270 -10.84362 -10.72226 -10.48962 -10.36620 -10.11440 -9.82983 -9.44119 -9.14590 -8.46562 -8.41709 -8.20737 -7.85281 -5.91776 -4.09306 1.73480 1.75660 3.30790 3.38272 3.40618 4.10761 4.43910 4.91277 5.08159 5.22106 5.31340 5.48658 5.49369 5.58547 5.64233 5.68770 5.86020 5.88318 5.90710 5.97509 6.25330 6.34099 6.36658 6.43751 6.57552 6.64283 6.73601 6.86888 6.87212 6.92527 6.96644 7.12319 7.18368 7.40247 7.49545 7.81169 8.07829 8.38125 8.62747 9.00635 9.62703 11.09287 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.006622 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.431443 B = 4227.261723 C = 4555.612129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.096 4.096 6 C -0.058 4.058 7 C 0.116 3.884 8 H 0.066 0.934 9 C -0.142 4.142 10 C -0.143 4.143 11 C 0.224 3.776 12 C -0.130 4.130 13 C -0.543 4.543 14 H 0.056 0.944 15 C 0.081 3.919 16 N -0.860 5.860 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.345 6.345 22 C -0.116 4.116 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.013 0.987 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.259 0.741 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 6.377 -7.043 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.114 4.114 6 C -0.058 4.058 7 C 0.057 3.943 8 H 0.083 0.917 9 C -0.180 4.180 10 C -0.180 4.180 11 C 0.186 3.814 12 C -0.187 4.187 13 C -0.581 4.581 14 H 0.074 0.926 15 C -0.124 4.124 16 N -0.496 5.496 17 Si 0.713 3.287 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.265 6.265 22 C -0.134 4.134 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.814 6.614 -6.701 12.235 hybrid contribution -0.152 -1.029 0.534 1.169 sum -7.965 5.585 -6.168 11.519 Atomic orbital electron populations 1.20735 0.91670 1.02222 1.01993 1.19773 0.95608 0.93189 1.01042 1.20891 0.94287 0.97017 1.02826 1.21104 0.94162 0.97913 1.00928 1.21073 1.00678 0.91488 0.98198 1.19976 0.93152 0.95379 0.97279 1.21592 0.90179 0.92026 0.90468 0.91655 1.23077 0.98261 0.99540 0.97119 1.23097 0.96377 0.99042 0.99526 1.19632 0.87751 0.86449 0.87527 1.21783 0.96240 0.96875 1.03843 1.21445 1.47422 0.95828 0.93361 0.92604 1.24993 0.93951 0.95493 0.97961 1.69952 1.43338 1.25112 1.11197 0.86719 0.78463 0.83573 0.79900 1.20622 1.21183 1.19947 1.89061 1.24689 1.54457 1.58282 1.20843 0.93530 0.97414 1.01633 0.91517 0.91994 0.91813 0.86815 0.86516 0.85504 0.92067 0.91915 0.91752 0.92776 0.96746 0.89113 0.94364 0.93109 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.10 -1.39 5.88 -104.62 -0.62 -2.00 16 3 C -0.13 -1.86 9.70 -39.59 -0.38 -2.25 16 4 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 5 C -0.10 -1.75 9.33 -39.58 -0.37 -2.12 16 6 C -0.06 -1.09 5.06 -104.62 -0.53 -1.62 16 7 C 0.12 2.47 3.48 -26.83 -0.09 2.38 16 8 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 9 C -0.14 -2.68 6.57 -24.72 -0.16 -2.85 16 10 C -0.14 -3.00 6.26 -25.21 -0.16 -3.15 16 11 C 0.22 5.61 0.74 -91.20 -0.07 5.55 16 12 C -0.13 -3.18 8.44 37.16 0.31 -2.87 16 13 C -0.54 -14.90 8.20 -34.43 -0.28 -15.18 16 14 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 15 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 16 N -0.86 -24.86 10.93 55.43 0.61 -24.26 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 O -0.35 -8.86 9.38 -35.23 -0.33 -9.19 16 22 C -0.12 -1.92 9.34 -39.58 -0.37 -2.29 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.13 2.41 7.71 -52.49 -0.40 2.01 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.12 8.00 -51.93 -0.42 0.71 16 31 H 0.06 1.34 7.39 -51.93 -0.38 0.95 16 32 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 2.47 6.00 -51.93 -0.31 2.16 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -29.78 302.91 -8.68 -38.47 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.65 Total: 1.45 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.85 Total: -27.34 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.61 Total: -24.26 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.33 Total: -9.19 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.78 -8.68 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309198510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.586 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds