Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 120.00606 * 2 1 4 4 C 1.38207 * 120.00607 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99994 * 359.85455 * 4 3 2 6 6 C 1.38225 * 119.99585 * 0.39914 * 5 4 3 7 7 C 1.50697 * 119.99916 * 179.80985 * 6 5 4 8 8 H 1.09002 * 110.55178 * 159.02547 * 7 6 5 9 9 C 1.54998 * 110.61948 * 281.90433 * 7 6 5 10 10 C 1.54809 * 102.09123 * 155.68159 * 9 7 6 11 11 C 1.54094 * 104.18952 * 339.11741 * 10 9 7 12 12 C 1.52999 * 109.87954 * 238.54445 * 11 10 9 13 13 C 1.50705 * 109.87444 * 117.54375 * 11 10 9 14 14 H 1.07991 * 120.00499 * 0.02562 * 13 11 10 15 15 C 1.37887 * 119.99781 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99543 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 119.99842 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47263 * 90.00601 * 17 15 13 19 19 H 1.48501 * 109.46901 * 210.00183 * 17 15 13 20 20 H 1.48498 * 109.47555 * 330.00075 * 17 15 13 21 21 O 1.43741 * 107.29615 * 357.97072 * 11 10 9 22 22 C 1.38217 * 119.99504 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46759 * 269.98089 * 1 2 3 24 24 H 1.08999 * 109.46789 * 29.98031 * 1 2 3 25 25 H 1.09000 * 109.47103 * 149.98002 * 1 2 3 26 26 H 1.07998 * 119.99565 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.00389 * 180.02562 * 4 3 2 28 28 H 1.07993 * 120.00492 * 180.20585 * 5 4 3 29 29 H 1.08995 * 110.90427 * 273.88214 * 9 7 6 30 30 H 1.08997 * 110.90503 * 37.48164 * 9 7 6 31 31 H 1.09003 * 110.48765 * 97.79818 * 10 9 7 32 32 H 1.09000 * 110.48379 * 220.44101 * 10 9 7 33 33 H 1.09002 * 109.46976 * 60.00317 * 12 11 10 34 34 H 1.09001 * 109.47056 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47312 * 300.00312 * 12 11 10 36 36 H 0.97004 * 119.99204 * 180.02562 * 16 15 13 37 37 H 1.07994 * 120.00388 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0001 0.0041 6 6 3.5806 -1.1972 -0.0012 7 6 4.3340 -2.5023 -0.0016 8 1 3.6987 -3.3110 0.3595 9 6 4.8711 -2.8220 -1.4200 10 6 6.0683 -3.7536 -1.1110 11 6 6.4193 -3.4433 0.3570 12 6 7.8702 -2.9677 0.4557 13 6 6.2259 -4.6763 1.2016 14 1 5.8870 -5.5951 0.7464 15 6 6.4826 -4.6317 2.5557 16 7 6.8957 -3.5129 3.1100 17 14 6.2435 -6.1601 3.6025 18 1 7.5085 -6.9369 3.6405 19 1 5.8661 -5.7610 4.9822 20 1 5.1658 -6.9975 3.0172 21 8 5.5324 -2.4015 0.7975 22 6 2.1980 -1.1971 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6585 2.1325 -0.0004 27 1 4.1205 2.1325 0.0010 28 1 5.3517 -0.0002 0.0079 29 1 4.1179 -3.3403 -2.0134 30 1 5.2042 -1.9145 -1.9234 31 1 5.7772 -4.7982 -1.2211 32 1 6.9108 -3.5207 -1.7622 33 1 7.9984 -2.0659 -0.1431 34 1 8.1114 -2.7507 1.4962 35 1 8.5344 -3.7480 0.0842 36 1 7.0766 -3.4816 4.0625 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309198510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -47.317921 kcal Electronic energy + Delta-G solvation = -18004.151408 eV Core-core repulsion = 15324.126929 eV Total energy + Delta-G solvation = -2680.024479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77928 -39.43433 -35.14274 -33.66359 -32.71713 -32.67572 -30.60753 -27.67736 -27.29461 -26.26899 -23.33460 -22.85112 -21.18553 -20.95372 -18.47083 -17.48395 -17.09042 -16.61339 -16.14991 -15.56809 -15.29052 -14.90607 -14.63017 -14.30231 -14.08747 -13.89009 -13.40521 -13.20638 -13.09204 -12.94483 -12.78183 -12.63231 -12.50735 -12.34727 -12.23017 -11.84657 -11.83612 -11.44797 -11.20660 -11.02016 -10.57083 -9.91478 -9.62110 -9.37981 -8.01639 -6.26075 0.48254 0.53261 1.38947 1.40122 1.49390 2.42107 2.84663 3.15117 3.55668 3.92121 3.97568 4.09546 4.10050 4.28519 4.33386 4.49973 4.57688 4.61061 4.72093 4.78852 4.88682 4.93750 4.95550 5.01209 5.05522 5.10477 5.16341 5.21239 5.33876 5.36973 5.50695 5.64013 5.67445 5.71691 5.87750 6.07427 6.19227 6.32410 6.68929 7.00442 7.49994 8.97934 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.006622 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.431443 B = 4227.261723 C = 4555.612129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.082 4.082 7 C 0.111 3.889 8 H 0.045 0.955 9 C -0.129 4.129 10 C -0.139 4.139 11 C 0.208 3.792 12 C -0.124 4.124 13 C -0.558 4.558 14 H 0.052 0.948 15 C 0.032 3.968 16 N -0.890 5.890 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.270 1.270 21 O -0.375 6.375 22 C -0.129 4.129 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.257 0.743 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 7.140 -7.998 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.082 4.082 7 C 0.052 3.948 8 H 0.063 0.937 9 C -0.166 4.166 10 C -0.176 4.176 11 C 0.170 3.830 12 C -0.181 4.181 13 C -0.596 4.596 14 H 0.070 0.930 15 C -0.170 4.170 16 N -0.527 5.527 17 Si 0.772 3.228 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.195 1.195 21 O -0.295 6.295 22 C -0.147 4.147 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.168 0.832 27 H 0.159 0.841 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.700 7.368 -7.671 14.395 hybrid contribution 0.378 -1.204 0.818 1.504 sum -9.322 6.164 -6.853 13.109 Atomic orbital electron populations 1.20810 0.88805 1.03839 1.02992 1.20224 0.97684 0.92413 0.98987 1.21339 0.93849 0.98442 1.00911 1.21388 0.95096 0.97694 0.99795 1.21022 0.99877 0.92656 1.00380 1.19892 0.94168 0.94373 0.99805 1.21682 0.88833 0.93109 0.91133 0.93747 1.23003 0.97829 0.99647 0.96132 1.23001 0.97915 0.99469 0.97249 1.19757 0.87896 0.85746 0.89578 1.21680 0.96574 0.97781 1.02106 1.21815 1.46950 0.96710 0.94086 0.92981 1.25733 0.93889 0.98162 0.99251 1.70110 1.44496 1.26957 1.11174 0.85757 0.78681 0.80304 0.78027 1.19686 1.21255 1.19458 1.89001 1.26273 1.54362 1.59910 1.21022 0.92664 0.98945 1.02102 0.90658 0.89700 0.91001 0.83204 0.84097 0.87644 0.89571 0.90946 0.91853 0.91133 0.95248 0.92196 0.93616 0.93389 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.24 0.71 -1.23 16 2 C -0.09 -2.44 5.88 -19.87 -0.12 -2.56 16 3 C -0.13 -3.18 9.70 22.27 0.22 -2.97 16 4 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 5 C -0.12 -4.42 9.33 22.27 0.21 -4.21 16 6 C -0.08 -3.13 5.06 -19.86 -0.10 -3.24 16 7 C 0.11 4.82 3.48 30.53 0.11 4.92 16 8 H 0.04 2.06 8.06 -2.39 -0.02 2.04 16 9 C -0.13 -4.77 6.57 31.90 0.21 -4.56 16 10 C -0.14 -5.77 6.26 31.58 0.20 -5.57 16 11 C 0.21 10.62 0.74 -11.17 -0.01 10.62 16 12 C -0.12 -6.20 8.44 71.98 0.61 -5.59 16 13 C -0.56 -31.21 8.20 25.60 0.21 -31.00 16 14 H 0.05 2.86 7.33 -2.92 -0.02 2.84 16 15 C 0.03 1.80 5.26 84.66 0.45 2.24 16 16 N -0.89 -53.08 10.93 21.45 0.23 -52.85 16 17 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 O -0.38 -19.90 9.38 -148.98 -1.40 -21.30 16 22 C -0.13 -4.15 9.34 22.27 0.21 -3.94 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 25 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 27 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.11 4.19 7.71 -2.91 -0.02 4.17 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.53 8.00 -2.39 -0.02 2.52 16 31 H 0.06 2.60 7.39 -2.39 -0.02 2.59 16 32 H 0.07 2.66 7.70 -2.39 -0.02 2.64 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 3.37 6.00 -2.39 -0.01 3.36 16 35 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -65.66 302.91 5.01 -60.64 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.03 Total: 17.40 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 3.12 Total: -50.38 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.23 Total: -52.85 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.40 Total: -21.30 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.66 5.01 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309198510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.323 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds