Wall clock time and date at job start Mon Mar 30 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99913 * 2 1 4 4 C 1.38214 * 119.99875 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99987 * 359.97438 * 4 3 2 6 6 C 1.38209 * 119.99966 * 359.97121 * 5 4 3 7 7 C 1.50698 * 120.00166 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.33558 * 142.74730 * 7 6 5 9 9 C 1.54473 * 110.37575 * 265.00364 * 7 6 5 10 10 C 1.54508 * 104.06636 * 142.91845 * 9 7 6 11 11 C 1.54479 * 104.06289 * 359.97438 * 10 9 7 12 12 H 1.09011 * 110.36975 * 94.96299 * 11 10 9 13 13 C 1.50694 * 110.37387 * 217.19096 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 O 1.44421 * 104.80284 * 336.02440 * 11 10 9 22 22 C 1.38206 * 119.99808 * 180.16928 * 2 1 3 23 23 C 1.50704 * 120.00462 * 0.06819 * 22 2 1 24 24 H 1.09000 * 109.47064 * 89.99819 * 1 2 3 25 25 H 1.08994 * 109.47209 * 209.99106 * 1 2 3 26 26 H 1.08996 * 109.47459 * 329.99827 * 1 2 3 27 27 H 1.08005 * 120.00078 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00003 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.99975 * 179.97438 * 5 4 3 30 30 H 1.09001 * 110.51357 * 24.27277 * 9 7 6 31 31 H 1.09003 * 110.62845 * 261.61840 * 9 7 6 32 32 H 1.09005 * 110.51220 * 241.35421 * 10 9 7 33 33 H 1.09000 * 110.51590 * 118.64503 * 10 9 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47046 * 270.20805 * 23 22 2 36 36 H 1.08997 * 109.46690 * 30.20325 * 23 22 2 37 37 H 1.09000 * 109.47277 * 150.21086 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0027 7 6 4.3341 -2.5020 0.0045 8 1 3.8187 -3.2361 0.6238 9 6 4.4942 -3.0325 -1.4374 10 6 5.9045 -3.6636 -1.4509 11 6 6.4299 -3.4392 -0.0156 12 1 6.2376 -4.3177 0.6005 13 6 7.9043 -3.1286 -0.0392 14 1 8.4332 -3.0903 -0.9801 15 6 8.5783 -2.8934 1.1404 16 7 7.9342 -2.9396 2.2862 17 14 10.4061 -2.5092 1.1112 18 1 11.1793 -3.7731 1.2108 19 1 10.7467 -1.8193 -0.1590 20 1 10.7453 -1.6296 2.2586 21 8 5.6849 -2.3042 0.4768 22 6 2.1980 -1.1969 -0.0035 23 6 1.4446 -2.5021 -0.0089 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6583 2.1327 0.0004 28 1 4.1205 2.1326 0.0010 29 1 5.3517 0.0000 0.0016 30 1 4.4354 -2.2137 -2.1544 31 1 3.7369 -3.7854 -1.6560 32 1 6.5429 -3.1567 -2.1745 33 1 5.8442 -4.7289 -1.6737 34 1 8.4085 -2.7744 3.1161 35 1 1.2586 -2.8185 1.0174 36 1 0.4943 -2.3708 -0.5264 37 1 2.0358 -3.2608 -0.5216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309300550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:19 Heat of formation + Delta-G solvation = -38.538370 kcal Electronic energy + Delta-G solvation = -17903.347537 eV Core-core repulsion = 15223.703768 eV Total energy + Delta-G solvation = -2679.643769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62731 -37.68166 -33.08154 -33.01486 -31.98622 -30.77360 -28.34821 -27.04688 -26.04548 -24.59165 -22.03645 -20.63328 -19.96207 -19.53783 -16.80674 -15.76109 -15.71129 -14.94476 -14.61142 -14.25112 -14.02776 -13.58334 -13.38724 -12.81873 -12.64447 -12.56499 -12.30980 -12.19876 -11.90648 -11.67645 -11.62800 -11.03931 -10.91764 -10.67474 -10.54163 -10.36490 -10.18548 -10.00852 -9.64130 -9.11299 -8.62378 -8.24062 -8.17276 -7.98435 -6.02202 -4.14887 1.72272 1.77807 3.30560 3.37500 3.40862 4.09282 4.41780 4.86541 5.04730 5.18107 5.26623 5.39840 5.48930 5.50563 5.54507 5.63890 5.66196 5.78734 5.81474 5.88708 5.91545 6.02039 6.12683 6.25162 6.33922 6.36999 6.49464 6.63370 6.67672 6.79469 6.82071 6.89371 6.99403 7.19674 7.44236 7.51514 7.88233 8.21937 8.53872 8.96595 9.55829 11.05723 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032603 B = 0.006088 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.620064 B = 4598.203908 C = 5033.916426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.128 4.128 5 C -0.091 4.091 6 C -0.061 4.061 7 C 0.102 3.898 8 H 0.059 0.941 9 C -0.141 4.141 10 C -0.146 4.146 11 C 0.205 3.795 12 H 0.027 0.973 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.077 3.923 16 N -0.864 5.864 17 Si 0.892 3.108 18 H -0.279 1.279 19 H -0.272 1.272 20 H -0.285 1.285 21 O -0.345 6.345 22 C -0.086 4.086 23 C -0.117 4.117 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.854 3.781 -4.932 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.109 4.109 6 C -0.061 4.061 7 C 0.043 3.957 8 H 0.077 0.923 9 C -0.179 4.179 10 C -0.184 4.184 11 C 0.150 3.850 12 H 0.045 0.955 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.500 5.500 17 Si 0.720 3.280 18 H -0.205 1.205 19 H -0.197 1.197 20 H -0.211 1.211 21 O -0.264 6.264 22 C -0.086 4.086 23 C -0.174 4.174 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.758 3.968 -4.607 14.133 hybrid contribution 0.945 0.166 -0.008 0.959 sum -11.814 4.134 -4.615 13.340 Atomic orbital electron populations 1.20745 0.91790 1.02330 1.01745 1.19590 0.95429 0.92655 1.02187 1.20883 0.94292 0.96915 1.02562 1.21117 0.94087 0.98017 1.01382 1.21187 1.01313 0.91246 0.97156 1.19771 0.92312 0.95432 0.98602 1.21583 0.88457 0.91993 0.93697 0.92302 1.22902 0.98056 0.99747 0.97224 1.23054 0.94489 0.99112 1.01783 1.20523 0.91464 0.86196 0.86849 0.95509 1.21034 0.91458 1.51093 0.93031 0.91831 1.25095 0.98276 0.94010 0.95544 1.70035 1.35868 1.46590 0.97548 0.86605 0.85237 0.78356 0.77835 1.20505 1.19713 1.21080 1.89505 1.15191 1.46659 1.75063 1.19493 0.92889 0.94740 1.01502 1.20858 0.99596 0.94751 1.02185 0.91711 0.91604 0.92032 0.86833 0.86522 0.84690 0.91920 0.92215 0.91727 0.92667 0.92871 0.91353 0.91769 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.19 36.01 0.33 -0.84 16 2 C -0.10 -1.42 5.88 -104.63 -0.62 -2.04 16 3 C -0.13 -1.86 9.70 -39.58 -0.38 -2.24 16 4 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 5 C -0.09 -1.75 9.38 -39.59 -0.37 -2.12 16 6 C -0.06 -1.16 5.00 -104.62 -0.52 -1.68 16 7 C 0.10 2.11 2.70 -27.11 -0.07 2.04 16 8 H 0.06 1.20 7.19 -51.93 -0.37 0.83 16 9 C -0.14 -2.63 6.22 -25.17 -0.16 -2.79 16 10 C -0.15 -3.09 6.62 -25.16 -0.17 -3.26 16 11 C 0.20 5.34 3.06 -27.11 -0.08 5.26 16 12 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 13 C -0.53 -14.93 8.77 -34.44 -0.30 -15.23 16 14 H 0.06 1.74 7.57 -52.49 -0.40 1.34 16 15 C 0.08 2.18 5.43 -17.82 -0.10 2.08 16 16 N -0.86 -25.88 13.07 55.43 0.72 -25.15 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 O -0.34 -9.02 9.53 -35.23 -0.34 -9.35 16 22 C -0.09 -1.38 5.88 -104.62 -0.62 -2.00 16 23 C -0.12 -1.55 8.43 36.01 0.30 -1.24 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.65 6.72 -51.93 -0.35 0.30 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.14 2.88 7.28 -52.49 -0.38 2.49 16 30 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 31 H 0.06 0.95 7.35 -51.93 -0.38 0.56 16 32 H 0.06 1.37 7.71 -51.93 -0.40 0.97 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 37 H 0.07 0.93 5.73 -51.93 -0.30 0.63 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -30.86 298.98 -8.71 -39.57 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.43 Total: 0.49 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.15 Total: -26.51 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.72 Total: -25.15 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.34 Total: -9.35 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.86 -8.71 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309300550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.033 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds