Wall clock time and date at job start Mon Mar 30 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99913 * 2 1 4 4 C 1.38214 * 119.99875 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99987 * 359.97438 * 4 3 2 6 6 C 1.38209 * 119.99966 * 359.97121 * 5 4 3 7 7 C 1.50698 * 120.00166 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.33558 * 142.74730 * 7 6 5 9 9 C 1.54473 * 110.37575 * 265.00364 * 7 6 5 10 10 C 1.54508 * 104.06636 * 142.91845 * 9 7 6 11 11 C 1.54479 * 104.06289 * 359.97438 * 10 9 7 12 12 H 1.09011 * 110.36975 * 94.96299 * 11 10 9 13 13 C 1.50694 * 110.37387 * 217.19096 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 O 1.44421 * 104.80284 * 336.02440 * 11 10 9 22 22 C 1.38206 * 119.99808 * 180.16928 * 2 1 3 23 23 C 1.50704 * 120.00462 * 0.06819 * 22 2 1 24 24 H 1.09000 * 109.47064 * 89.99819 * 1 2 3 25 25 H 1.08994 * 109.47209 * 209.99106 * 1 2 3 26 26 H 1.08996 * 109.47459 * 329.99827 * 1 2 3 27 27 H 1.08005 * 120.00078 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00003 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.99975 * 179.97438 * 5 4 3 30 30 H 1.09001 * 110.51357 * 24.27277 * 9 7 6 31 31 H 1.09003 * 110.62845 * 261.61840 * 9 7 6 32 32 H 1.09005 * 110.51220 * 241.35421 * 10 9 7 33 33 H 1.09000 * 110.51590 * 118.64503 * 10 9 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47046 * 270.20805 * 23 22 2 36 36 H 1.08997 * 109.46690 * 30.20325 * 23 22 2 37 37 H 1.09000 * 109.47277 * 150.21086 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0027 7 6 4.3341 -2.5020 0.0045 8 1 3.8187 -3.2361 0.6238 9 6 4.4942 -3.0325 -1.4374 10 6 5.9045 -3.6636 -1.4509 11 6 6.4299 -3.4392 -0.0156 12 1 6.2376 -4.3177 0.6005 13 6 7.9043 -3.1286 -0.0392 14 1 8.4332 -3.0903 -0.9801 15 6 8.5783 -2.8934 1.1404 16 7 7.9342 -2.9396 2.2862 17 14 10.4061 -2.5092 1.1112 18 1 11.1793 -3.7731 1.2108 19 1 10.7467 -1.8193 -0.1590 20 1 10.7453 -1.6296 2.2586 21 8 5.6849 -2.3042 0.4768 22 6 2.1980 -1.1969 -0.0035 23 6 1.4446 -2.5021 -0.0089 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6583 2.1327 0.0004 28 1 4.1205 2.1326 0.0010 29 1 5.3517 0.0000 0.0016 30 1 4.4354 -2.2137 -2.1544 31 1 3.7369 -3.7854 -1.6560 32 1 6.5429 -3.1567 -2.1745 33 1 5.8442 -4.7289 -1.6737 34 1 8.4085 -2.7744 3.1161 35 1 1.2586 -2.8185 1.0174 36 1 0.4943 -2.3708 -0.5264 37 1 2.0358 -3.2608 -0.5216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309300550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:18 Heat of formation + Delta-G solvation = -55.759317 kcal Electronic energy + Delta-G solvation = -17904.094293 eV Core-core repulsion = 15223.703768 eV Total energy + Delta-G solvation = -2680.390525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00207 -39.33222 -34.93131 -34.23031 -33.57359 -32.53663 -29.96634 -28.35271 -27.16851 -26.40566 -23.70309 -22.10502 -21.46918 -21.00936 -18.84838 -17.21967 -17.12900 -16.72392 -16.29595 -15.85142 -15.25432 -15.07415 -14.86325 -14.33715 -14.07232 -13.77453 -13.63096 -13.57351 -13.31744 -12.96915 -12.83869 -12.71488 -12.45682 -12.41748 -12.20976 -11.96268 -11.69133 -11.64334 -11.30135 -11.06948 -10.75368 -10.13129 -9.40409 -9.37806 -8.19514 -6.40144 0.46741 0.51218 1.38073 1.40235 1.51023 2.38129 2.81383 3.03149 3.56567 3.84395 3.97798 4.06137 4.07610 4.17824 4.25028 4.35711 4.47798 4.54997 4.60616 4.75199 4.80208 4.86574 4.89392 4.93671 4.98928 5.00413 5.05071 5.12243 5.22255 5.31193 5.42669 5.48081 5.66574 5.70146 5.71905 5.85293 6.12694 6.20225 6.53405 6.89105 7.35546 8.89377 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032603 B = 0.006088 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.620064 B = 4598.203908 C = 5033.916426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.087 4.087 7 C 0.097 3.903 8 H 0.056 0.944 9 C -0.127 4.127 10 C -0.139 4.139 11 C 0.196 3.804 12 H -0.005 1.005 13 C -0.551 4.551 14 H 0.066 0.934 15 C 0.021 3.979 16 N -0.905 5.905 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.265 1.265 20 H -0.283 1.283 21 O -0.380 6.380 22 C -0.092 4.092 23 C -0.117 4.117 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.262 0.738 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 4.560 -6.058 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.087 4.087 7 C 0.038 3.962 8 H 0.074 0.926 9 C -0.165 4.165 10 C -0.177 4.177 11 C 0.140 3.860 12 H 0.012 0.988 13 C -0.588 4.588 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.543 5.543 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.189 1.189 20 H -0.209 1.209 21 O -0.300 6.300 22 C -0.093 4.093 23 C -0.173 4.173 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.885 4.740 -5.751 16.647 hybrid contribution 1.492 -0.044 0.355 1.534 sum -13.393 4.696 -5.396 15.184 Atomic orbital electron populations 1.20836 0.88502 1.03780 1.03307 1.20115 0.97754 0.91815 0.99838 1.21310 0.93474 0.98658 1.00737 1.21312 0.95312 0.97384 1.00944 1.21025 0.99698 0.93182 1.00433 1.19750 0.93777 0.94134 1.01005 1.21763 0.86172 0.93546 0.94692 0.92589 1.22827 0.97280 1.00473 0.95871 1.22933 0.95754 1.00687 0.98290 1.20434 0.91204 0.85129 0.89214 0.98778 1.21467 0.93146 1.50912 0.93304 0.91623 1.26007 1.03327 0.93702 0.95045 1.70180 1.37901 1.47995 0.98213 0.85481 0.79194 0.78559 0.77937 1.19096 1.18920 1.20900 1.89423 1.18090 1.46452 1.76065 1.19807 0.91670 0.96951 1.00831 1.20920 1.00479 0.93071 1.02842 0.89878 0.90610 0.90274 0.83278 0.84862 0.88598 0.91506 0.88742 0.92173 0.90544 0.92882 0.90931 0.88786 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.19 71.24 0.65 -1.14 16 2 C -0.10 -2.45 5.88 -19.87 -0.12 -2.57 16 3 C -0.12 -3.24 9.70 22.27 0.22 -3.02 16 4 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 5 C -0.13 -5.02 9.38 22.27 0.21 -4.81 16 6 C -0.09 -3.34 5.00 -19.87 -0.10 -3.44 16 7 C 0.10 4.14 2.70 30.35 0.08 4.22 16 8 H 0.06 2.36 7.19 -2.39 -0.02 2.35 16 9 C -0.13 -4.67 6.22 31.61 0.20 -4.48 16 10 C -0.14 -5.93 6.62 31.61 0.21 -5.72 16 11 C 0.20 10.69 3.06 30.35 0.09 10.79 16 12 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 13 C -0.55 -32.29 8.77 25.60 0.22 -32.07 16 14 H 0.07 3.69 7.57 -2.91 -0.02 3.67 16 15 C 0.02 1.23 5.43 84.66 0.46 1.69 16 16 N -0.91 -56.58 13.07 21.45 0.28 -56.30 16 17 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 O -0.38 -21.07 9.53 -148.98 -1.42 -22.49 16 22 C -0.09 -2.82 5.88 -19.86 -0.12 -2.94 16 23 C -0.12 -2.79 8.43 71.24 0.60 -2.19 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.14 6.72 -2.39 -0.02 1.13 16 26 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 27 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.10 4.49 7.28 -2.91 -0.02 4.46 16 30 H 0.07 2.39 7.87 -2.39 -0.02 2.38 16 31 H 0.09 2.80 7.35 -2.39 -0.02 2.78 16 32 H 0.06 2.58 7.71 -2.38 -0.02 2.56 16 33 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.66 6.72 -2.39 -0.02 1.64 16 37 H 0.06 1.59 5.73 -2.39 -0.01 1.58 16 Total: -1.00 -70.76 298.98 4.77 -65.99 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.05 Total: 15.20 kcal Atomic # 6 Polarization: -52.45 SS G_CDS: 2.84 Total: -49.61 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.30 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.42 Total: -22.49 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.76 4.77 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309300550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.233 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds