Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.50701 * 120.00231 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.27215 * 144.29520 * 7 6 5 9 9 C 1.54944 * 110.30878 * 266.38756 * 7 6 5 10 10 C 1.55421 * 100.88882 * 155.28529 * 9 7 6 11 11 C 1.54379 * 102.31045 * 325.99358 * 10 9 7 12 12 H 1.09006 * 109.82869 * 261.76866 * 11 10 9 13 13 C 1.50702 * 109.90579 * 140.84132 * 11 10 9 14 14 H 1.08004 * 119.99935 * 0.36222 * 13 11 10 15 15 C 1.37875 * 120.00400 * 180.36732 * 13 11 10 16 16 N 1.31520 * 119.99488 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00194 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47323 * 60.00260 * 17 15 13 19 19 H 1.48510 * 109.47120 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47349 * 299.99667 * 17 15 13 21 21 O 1.43236 * 107.58946 * 21.28385 * 11 10 9 22 22 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 23 23 C 1.50706 * 120.00275 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 25 25 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 26 26 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 27 27 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 29 29 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 30 30 H 1.08998 * 111.12727 * 273.27683 * 9 7 6 31 31 H 1.09003 * 111.12336 * 37.44608 * 9 7 6 32 32 H 1.09000 * 110.88198 * 207.75391 * 10 9 7 33 33 H 1.09001 * 110.75830 * 84.17446 * 10 9 7 34 34 H 0.97004 * 119.99506 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.46442 * 270.02096 * 23 22 2 36 36 H 1.09000 * 109.46849 * 30.01503 * 23 22 2 37 37 H 1.08993 * 109.47102 * 150.01800 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 3.5807 -1.1970 0.0065 7 6 4.3342 -2.5021 0.0136 8 1 3.8035 -3.2413 0.6135 9 6 4.5249 -3.0208 -1.4340 10 6 5.7886 -3.9094 -1.2633 11 6 6.5855 -3.1447 -0.1846 12 1 7.3534 -2.5320 -0.6570 13 6 7.2252 -4.1206 0.7690 14 1 7.0896 -5.1826 0.6265 15 6 7.9835 -3.6579 1.8234 16 7 8.1490 -2.3647 1.9967 17 14 8.7759 -4.8676 3.0058 18 1 9.7037 -5.7544 2.2587 19 1 9.5327 -4.1220 4.0435 20 1 7.7219 -5.6880 3.6549 21 8 5.6631 -2.3077 0.5229 22 6 2.1981 -1.1970 0.0060 23 6 1.4446 -2.5021 0.0119 24 1 -0.3633 0.0051 1.0277 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5094 27 1 1.6583 2.1326 -0.0004 28 1 4.1205 2.1326 -0.0088 29 1 5.3517 0.0000 0.0019 30 1 3.6676 -3.6121 -1.7556 31 1 4.7141 -2.1986 -2.1241 32 1 6.3523 -3.9663 -2.1945 33 1 5.5165 -4.9046 -0.9119 34 1 8.6828 -2.0391 2.7383 35 1 1.2623 -2.8116 1.0411 36 1 0.4925 -2.3743 -0.5031 37 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309300554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -35.994645 kcal Electronic energy + Delta-G solvation = -17932.623988 eV Core-core repulsion = 15253.090523 eV Total energy + Delta-G solvation = -2679.533465 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61676 -37.69888 -33.07606 -32.98739 -31.92918 -30.80762 -28.33933 -27.01022 -26.04799 -24.59155 -21.94886 -20.51402 -20.19222 -19.50181 -16.54130 -16.11692 -15.81279 -14.86390 -14.58799 -14.24210 -14.05693 -13.72715 -13.06615 -12.71321 -12.63280 -12.55585 -12.41524 -12.02359 -11.76922 -11.68515 -11.59909 -11.14193 -10.86602 -10.64221 -10.53452 -10.32828 -10.26313 -10.08356 -9.79739 -9.17860 -8.50694 -8.20654 -8.16555 -7.75994 -5.95625 -4.09509 1.74028 1.79280 3.33816 3.38674 3.40613 4.10969 4.45317 4.88306 5.06924 5.18569 5.28640 5.33763 5.47297 5.52287 5.55240 5.57716 5.61500 5.80362 5.82835 5.90755 5.96048 6.05564 6.12968 6.27468 6.34204 6.38198 6.48699 6.56786 6.65897 6.73027 6.83244 6.91031 7.00691 7.21675 7.45839 7.66989 7.91193 8.30975 8.62552 9.06819 9.62047 11.11038 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.006048 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.541765 B = 4628.341053 C = 4881.385193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.092 4.092 6 C -0.067 4.067 7 C 0.114 3.886 8 H 0.063 0.937 9 C -0.145 4.145 10 C -0.145 4.145 11 C 0.206 3.794 12 H 0.038 0.962 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.079 3.921 16 N -0.863 5.863 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.350 6.350 22 C -0.086 4.086 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 3.701 -5.378 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.110 4.110 6 C -0.067 4.067 7 C 0.055 3.945 8 H 0.080 0.920 9 C -0.183 4.183 10 C -0.183 4.183 11 C 0.151 3.849 12 H 0.056 0.944 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.126 4.126 16 N -0.499 5.499 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.270 6.270 22 C -0.086 4.086 23 C -0.175 4.175 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.650 3.982 -5.106 14.211 hybrid contribution 0.473 -0.669 0.630 1.033 sum -12.178 3.314 -4.476 13.391 Atomic orbital electron populations 1.20786 0.91850 1.02250 1.01882 1.19588 0.95416 0.92689 1.02196 1.20873 0.94298 0.96890 1.02645 1.21111 0.94081 0.98013 1.01396 1.21171 1.01219 0.91274 0.97288 1.19995 0.92451 0.95857 0.98419 1.21531 0.88267 0.91567 0.93163 0.91972 1.23241 0.98573 0.99468 0.97030 1.23239 0.95530 0.99514 0.99971 1.20289 0.87350 0.88534 0.88747 0.94421 1.21349 1.31510 0.92437 1.13041 0.92374 1.25045 0.95324 0.94928 0.97328 1.70025 1.37729 1.12364 1.29789 0.86739 0.79450 0.81319 0.80875 1.20176 1.21211 1.20176 1.88783 1.12807 1.65178 1.60197 1.19487 0.92938 0.94709 1.01477 1.20895 0.99609 0.94757 1.02269 0.91637 0.92141 0.91465 0.86873 0.86555 0.84813 0.91709 0.91526 0.92191 0.91568 0.92962 0.91315 0.91640 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.60 36.01 0.35 -0.85 16 2 C -0.10 -1.43 5.88 -104.62 -0.62 -2.05 16 3 C -0.13 -1.87 9.70 -39.58 -0.38 -2.25 16 4 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 5 C -0.09 -1.75 9.38 -39.58 -0.37 -2.12 16 6 C -0.07 -1.27 5.10 -104.62 -0.53 -1.80 16 7 C 0.11 2.36 2.86 -26.86 -0.08 2.29 16 8 H 0.06 1.30 7.08 -51.93 -0.37 0.93 16 9 C -0.15 -2.66 6.34 -24.42 -0.15 -2.82 16 10 C -0.14 -2.99 6.53 -24.72 -0.16 -3.16 16 11 C 0.21 5.33 3.36 -27.16 -0.09 5.24 16 12 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.55 -15.40 8.75 -34.44 -0.30 -15.70 16 14 H 0.06 1.59 7.53 -52.48 -0.39 1.19 16 15 C 0.08 2.28 5.41 -17.82 -0.10 2.18 16 16 N -0.86 -25.91 12.91 55.43 0.72 -25.20 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 O -0.35 -9.12 9.02 -35.23 -0.32 -9.44 16 22 C -0.09 -1.39 5.88 -104.62 -0.62 -2.00 16 23 C -0.12 -1.59 8.83 36.01 0.32 -1.27 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.07 0.66 5.95 -51.93 -0.31 0.35 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.13 2.81 7.32 -52.49 -0.38 2.43 16 30 H 0.06 1.01 7.22 -51.93 -0.37 0.63 16 31 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.35 7.66 -51.93 -0.40 0.95 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.72 5.95 -51.93 -0.31 0.41 16 37 H 0.07 0.93 5.70 -51.93 -0.30 0.64 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -30.94 298.00 -8.61 -39.55 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.34 Total: 0.76 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.13 Total: -26.75 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.72 Total: -25.20 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.32 Total: -9.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.94 -8.61 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309300554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.554 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds