Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.50701 * 120.00231 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.27215 * 144.29520 * 7 6 5 9 9 C 1.54944 * 110.30878 * 266.38756 * 7 6 5 10 10 C 1.55421 * 100.88882 * 155.28529 * 9 7 6 11 11 C 1.54379 * 102.31045 * 325.99358 * 10 9 7 12 12 H 1.09006 * 109.82869 * 261.76866 * 11 10 9 13 13 C 1.50702 * 109.90579 * 140.84132 * 11 10 9 14 14 H 1.08004 * 119.99935 * 0.36222 * 13 11 10 15 15 C 1.37875 * 120.00400 * 180.36732 * 13 11 10 16 16 N 1.31520 * 119.99488 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00194 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47323 * 60.00260 * 17 15 13 19 19 H 1.48510 * 109.47120 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47349 * 299.99667 * 17 15 13 21 21 O 1.43236 * 107.58946 * 21.28385 * 11 10 9 22 22 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 23 23 C 1.50706 * 120.00275 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 25 25 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 26 26 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 27 27 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 29 29 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 30 30 H 1.08998 * 111.12727 * 273.27683 * 9 7 6 31 31 H 1.09003 * 111.12336 * 37.44608 * 9 7 6 32 32 H 1.09000 * 110.88198 * 207.75391 * 10 9 7 33 33 H 1.09001 * 110.75830 * 84.17446 * 10 9 7 34 34 H 0.97004 * 119.99506 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.46442 * 270.02096 * 23 22 2 36 36 H 1.09000 * 109.46849 * 30.01503 * 23 22 2 37 37 H 1.08993 * 109.47102 * 150.01800 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 3.5807 -1.1970 0.0065 7 6 4.3342 -2.5021 0.0136 8 1 3.8035 -3.2413 0.6135 9 6 4.5249 -3.0208 -1.4340 10 6 5.7886 -3.9094 -1.2633 11 6 6.5855 -3.1447 -0.1846 12 1 7.3534 -2.5320 -0.6570 13 6 7.2252 -4.1206 0.7690 14 1 7.0896 -5.1826 0.6265 15 6 7.9835 -3.6579 1.8234 16 7 8.1490 -2.3647 1.9967 17 14 8.7759 -4.8676 3.0058 18 1 9.7037 -5.7544 2.2587 19 1 9.5327 -4.1220 4.0435 20 1 7.7219 -5.6880 3.6549 21 8 5.6631 -2.3077 0.5229 22 6 2.1981 -1.1970 0.0060 23 6 1.4446 -2.5021 0.0119 24 1 -0.3633 0.0051 1.0277 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5094 27 1 1.6583 2.1326 -0.0004 28 1 4.1205 2.1326 -0.0088 29 1 5.3517 0.0000 0.0019 30 1 3.6676 -3.6121 -1.7556 31 1 4.7141 -2.1986 -2.1241 32 1 6.3523 -3.9663 -2.1945 33 1 5.5165 -4.9046 -0.9119 34 1 8.6828 -2.0391 2.7383 35 1 1.2623 -2.8116 1.0411 36 1 0.4925 -2.3743 -0.5031 37 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309300554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -53.228023 kcal Electronic energy + Delta-G solvation = -17933.371283 eV Core-core repulsion = 15253.090523 eV Total energy + Delta-G solvation = -2680.280760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99586 -39.33972 -34.88508 -34.23261 -33.53834 -32.55417 -29.95205 -28.31480 -27.17713 -26.42748 -23.54830 -22.09614 -21.63911 -20.96523 -18.61766 -17.66457 -17.18183 -16.64060 -16.19326 -15.71606 -15.36397 -15.05722 -14.74587 -14.22729 -13.96974 -13.76854 -13.66665 -13.51980 -13.35441 -12.97103 -12.77453 -12.67579 -12.48748 -12.39052 -12.28595 -12.02146 -11.63263 -11.62635 -11.46619 -11.08486 -10.67841 -9.91838 -9.37843 -9.35205 -8.12922 -6.35193 0.47842 0.52458 1.38493 1.41666 1.49217 2.40165 2.82155 3.07918 3.54857 3.83837 3.91337 4.02564 4.07668 4.23182 4.24560 4.34222 4.53312 4.54778 4.62035 4.70912 4.76344 4.88210 4.90663 4.93837 4.98124 5.03687 5.08607 5.14888 5.21391 5.29002 5.45925 5.57825 5.67292 5.73367 5.75248 5.88711 6.17985 6.21793 6.60099 7.05075 7.42195 8.93951 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.006048 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.541765 B = 4628.341053 C = 4881.385193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.125 4.125 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.091 4.091 7 C 0.107 3.893 8 H 0.058 0.942 9 C -0.129 4.129 10 C -0.137 4.137 11 C 0.197 3.803 12 H -0.001 1.001 13 C -0.565 4.565 14 H 0.063 0.937 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.270 1.270 21 O -0.385 6.385 22 C -0.093 4.093 23 C -0.118 4.118 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 3.232 -5.746 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.092 4.092 7 C 0.049 3.951 8 H 0.076 0.924 9 C -0.166 4.166 10 C -0.174 4.174 11 C 0.142 3.858 12 H 0.017 0.983 13 C -0.602 4.602 14 H 0.082 0.918 15 C -0.180 4.180 16 N -0.542 5.542 17 Si 0.784 3.216 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.195 1.195 21 O -0.305 6.305 22 C -0.093 4.093 23 C -0.174 4.174 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.548 3.500 -5.490 16.856 hybrid contribution 1.296 -0.441 0.723 1.548 sum -14.252 3.059 -4.767 15.336 Atomic orbital electron populations 1.20871 0.88565 1.04003 1.03097 1.20109 0.97734 0.91850 0.99887 1.21299 0.93477 0.98640 1.00833 1.21304 0.95307 0.97392 1.00994 1.21009 0.99593 0.93209 1.00483 1.19947 0.93890 0.94553 1.00773 1.21712 0.86026 0.93040 0.94355 0.92399 1.23164 0.98620 0.99257 0.95559 1.23118 0.96107 0.99298 0.98890 1.20190 0.87705 0.88142 0.89802 0.98336 1.21804 1.31759 0.93115 1.13548 0.91842 1.25971 0.96006 0.96717 0.99316 1.70195 1.38865 1.14540 1.30567 0.85609 0.78622 0.78904 0.78429 1.18747 1.20968 1.19481 1.88699 1.15263 1.65406 1.61129 1.19799 0.91734 0.96911 1.00831 1.20957 1.00554 0.93076 1.02847 0.90491 0.90129 0.90080 0.83350 0.84950 0.88747 0.88036 0.91458 0.90485 0.91072 0.93130 0.91034 0.88588 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.60 71.24 0.68 -1.15 16 2 C -0.10 -2.48 5.88 -19.86 -0.12 -2.60 16 3 C -0.12 -3.28 9.70 22.27 0.22 -3.06 16 4 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 5 C -0.12 -5.01 9.38 22.27 0.21 -4.80 16 6 C -0.09 -3.53 5.10 -19.86 -0.10 -3.63 16 7 C 0.11 4.56 2.86 30.51 0.09 4.65 16 8 H 0.06 2.46 7.08 -2.39 -0.02 2.45 16 9 C -0.13 -4.65 6.34 32.09 0.20 -4.45 16 10 C -0.14 -5.68 6.53 31.90 0.21 -5.47 16 11 C 0.20 10.73 3.36 30.32 0.10 10.84 16 12 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 13 C -0.56 -32.87 8.75 25.60 0.22 -32.64 16 14 H 0.06 3.51 7.53 -2.91 -0.02 3.49 16 15 C 0.02 1.27 5.41 84.65 0.46 1.73 16 16 N -0.90 -56.90 12.91 21.45 0.28 -56.62 16 17 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 O -0.38 -21.26 9.02 -148.98 -1.34 -22.61 16 22 C -0.09 -2.83 5.88 -19.86 -0.12 -2.95 16 23 C -0.12 -2.83 8.83 71.24 0.63 -2.20 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.08 1.16 5.95 -2.39 -0.01 1.15 16 27 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 29 H 0.09 4.42 7.32 -2.91 -0.02 4.40 16 30 H 0.10 2.92 7.22 -2.39 -0.02 2.90 16 31 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 32 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.07 2.86 7.66 -2.39 -0.02 2.85 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.10 1.68 5.95 -2.39 -0.01 1.67 16 37 H 0.06 1.60 5.70 -2.39 -0.01 1.58 16 Total: -1.00 -71.02 298.00 4.92 -66.10 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.05 Total: 15.57 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 2.91 Total: -49.72 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.34 Total: -22.61 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.02 4.92 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309300554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.873 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds