Wall clock time and date at job start Mon Mar 30 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38259 * 119.99708 * 264.72862 * 3 2 1 5 5 C 1.38214 * 119.99595 * 179.74299 * 4 3 2 6 6 C 1.38257 * 119.99925 * 0.53140 * 5 4 3 7 7 C 1.38209 * 120.00230 * 359.74654 * 6 5 4 8 8 C 1.38210 * 120.00073 * 84.99891 * 3 2 1 9 9 C 1.50702 * 119.99744 * 0.02562 * 8 3 2 10 10 H 1.09001 * 110.33027 * 325.78840 * 9 8 3 11 11 C 1.54480 * 110.37482 * 88.16549 * 9 8 3 12 12 C 1.54505 * 104.06425 * 142.80643 * 11 9 8 13 13 C 1.54484 * 104.06229 * 359.97438 * 12 11 9 14 14 H 1.08997 * 110.46342 * 94.89897 * 13 12 11 15 15 C 1.50702 * 110.36881 * 217.18895 * 13 12 11 16 16 H 1.07997 * 120.00362 * 356.83265 * 15 13 12 17 17 C 1.37883 * 119.99613 * 176.83505 * 15 13 12 18 18 N 1.31512 * 119.99979 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99841 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46882 * 59.99863 * 19 17 15 21 21 H 1.48498 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46730 * 299.99903 * 19 17 15 23 23 O 1.44420 * 104.80350 * 336.01899 * 13 12 11 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.07997 * 120.00263 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.99870 * 180.29393 * 5 4 3 31 31 H 1.08005 * 119.99315 * 179.76586 * 6 5 4 32 32 H 1.07995 * 120.00286 * 180.02562 * 7 6 5 33 33 H 1.09005 * 110.50545 * 261.45349 * 11 9 8 34 34 H 1.08996 * 110.51056 * 24.15567 * 11 9 8 35 35 H 1.08996 * 110.51244 * 241.35051 * 12 11 9 36 36 H 1.09002 * 110.62732 * 118.69618 * 12 11 9 37 37 H 0.97000 * 119.99781 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3664 2.0359 -1.1923 5 6 2.8220 3.3408 -1.1928 6 6 2.9541 4.0273 0.0000 7 6 2.6256 3.4105 1.1924 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4925 10 1 0.9675 0.7535 2.3483 11 6 3.0269 0.6758 3.0593 12 6 2.9219 0.8836 4.5867 13 6 1.6508 1.7438 4.7621 14 1 0.7878 1.1108 4.9682 15 6 1.8436 2.7443 5.8725 16 1 2.7582 2.7441 6.4469 17 6 0.8522 3.6599 6.1552 18 7 -0.2617 3.6598 5.4561 19 14 1.0914 4.9005 7.5311 20 1 2.2819 5.7390 7.2400 21 1 -0.1109 5.7664 7.6314 22 1 1.2935 4.1826 8.8152 23 8 1.4867 2.4217 3.4975 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.2678 1.4980 -2.1236 30 1 3.0785 3.8228 -2.1246 31 1 3.3137 5.0457 -0.0002 32 1 2.7283 3.9469 2.1241 33 1 2.9656 -0.3843 2.8129 34 1 3.9537 1.1045 2.6782 35 1 3.7970 1.4150 4.9609 36 1 2.8098 -0.0728 5.0976 37 1 -0.9590 4.3042 5.6548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309368591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:05 Heat of formation + Delta-G solvation = -38.038560 kcal Electronic energy + Delta-G solvation = -18039.862701 eV Core-core repulsion = 15360.240606 eV Total energy + Delta-G solvation = -2679.622095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56681 -37.54442 -34.01376 -32.70405 -31.07546 -30.78860 -29.16199 -27.66356 -24.70144 -23.58974 -22.32261 -20.73853 -20.23273 -19.59720 -16.84367 -15.96846 -15.72977 -14.87389 -14.84273 -14.35031 -13.66354 -13.55349 -13.35120 -13.26509 -12.85081 -12.66980 -12.27037 -11.83941 -11.68723 -11.64746 -11.13708 -10.92919 -10.88341 -10.60822 -10.55240 -10.34055 -10.17999 -9.99733 -9.62890 -9.11372 -8.61040 -8.38636 -8.24943 -7.98831 -6.00839 -4.13712 1.71344 1.81547 3.32454 3.37225 3.39346 4.13204 4.42274 4.90330 5.05348 5.13501 5.31634 5.37995 5.44421 5.52975 5.56051 5.67322 5.70209 5.78854 5.81745 5.95921 6.04029 6.12246 6.26821 6.31227 6.37617 6.40821 6.51171 6.60019 6.67505 6.78901 6.81447 6.85961 6.98895 7.19567 7.42949 7.51597 7.88683 8.22135 8.52827 8.97207 9.56638 11.06789 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.006688 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.053111 B = 4185.794201 C = 4559.180741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.131 4.131 7 C -0.087 4.087 8 C -0.061 4.061 9 C 0.099 3.901 10 H 0.062 0.938 11 C -0.142 4.142 12 C -0.146 4.146 13 C 0.206 3.794 14 H 0.025 0.975 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.077 3.923 18 N -0.862 5.862 19 Si 0.892 3.108 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 O -0.342 6.342 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -5.125 -11.282 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.105 4.105 8 C -0.061 4.061 9 C 0.040 3.960 10 H 0.080 0.920 11 C -0.180 4.180 12 C -0.184 4.184 13 C 0.151 3.849 14 H 0.043 0.957 15 C -0.569 4.569 16 H 0.081 0.919 17 C -0.129 4.129 18 N -0.498 5.498 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 O -0.261 6.261 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.058 -4.821 -11.334 12.968 hybrid contribution 0.144 0.590 0.654 0.893 sum 4.201 -4.231 -10.679 12.231 Atomic orbital electron populations 1.21771 0.94797 1.01425 1.02623 1.20546 0.96296 0.92971 1.02437 1.19655 0.99824 0.96226 0.92569 1.20844 1.01438 0.95301 0.96902 1.21006 1.01173 0.94895 0.97685 1.21138 1.01307 0.99758 0.92687 1.21203 0.96181 0.94507 0.98604 1.19778 0.97958 0.94594 0.93790 1.21674 0.95167 0.91163 0.88013 0.92023 1.22905 0.98682 0.99150 0.97234 1.23053 1.01935 0.99986 0.93464 1.20506 0.90339 0.91242 0.82861 0.95745 1.20990 1.02949 1.18145 1.14797 0.91862 1.25080 0.94925 0.97105 0.95758 1.70028 1.05971 1.35198 1.38617 0.86685 0.77688 0.81358 0.82396 1.20082 1.21176 1.20090 1.89522 1.89105 1.32510 1.14956 0.92796 0.92653 0.91809 0.90835 0.91569 0.86741 0.86817 0.86565 0.84732 0.92263 0.91910 0.91725 0.92699 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.72 37.16 0.36 -1.58 16 2 C -0.09 -1.14 5.38 -27.88 -0.15 -1.29 16 3 C -0.08 -1.31 5.13 -104.62 -0.54 -1.85 16 4 C -0.13 -1.80 9.68 -39.58 -0.38 -2.19 16 5 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 6 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 7 C -0.09 -1.65 9.38 -39.59 -0.37 -2.03 16 8 C -0.06 -1.15 4.99 -104.62 -0.52 -1.67 16 9 C 0.10 2.03 2.72 -27.11 -0.07 1.96 16 10 H 0.06 1.24 5.67 -51.93 -0.29 0.95 16 11 C -0.14 -2.63 6.32 -25.16 -0.16 -2.79 16 12 C -0.15 -3.08 6.62 -25.16 -0.17 -3.25 16 13 C 0.21 5.34 3.11 -27.10 -0.08 5.26 16 14 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 15 C -0.53 -14.95 8.78 -34.44 -0.30 -15.26 16 16 H 0.06 1.72 7.59 -52.49 -0.40 1.32 16 17 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 18 N -0.86 -25.72 12.94 55.43 0.72 -25.00 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 O -0.34 -8.89 9.42 -35.23 -0.33 -9.23 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.98 6.84 -51.93 -0.36 0.62 16 27 H 0.07 1.00 6.24 -51.93 -0.32 0.67 16 28 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.13 2.84 7.35 -52.49 -0.39 2.46 16 33 H 0.06 0.94 7.57 -51.93 -0.39 0.55 16 34 H 0.06 1.13 7.86 -51.93 -0.41 0.73 16 35 H 0.06 1.37 7.72 -51.93 -0.40 0.97 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -30.44 300.52 -8.86 -39.30 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.47 Total: 1.26 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -3.28 Total: -27.28 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.72 Total: -25.00 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.33 Total: -9.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.44 -8.86 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309368591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.264 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds