Wall clock time and date at job start Mon Mar 30 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38259 * 119.99708 * 264.72862 * 3 2 1 5 5 C 1.38214 * 119.99595 * 179.74299 * 4 3 2 6 6 C 1.38257 * 119.99925 * 0.53140 * 5 4 3 7 7 C 1.38209 * 120.00230 * 359.74654 * 6 5 4 8 8 C 1.38210 * 120.00073 * 84.99891 * 3 2 1 9 9 C 1.50702 * 119.99744 * 0.02562 * 8 3 2 10 10 H 1.09001 * 110.33027 * 325.78840 * 9 8 3 11 11 C 1.54480 * 110.37482 * 88.16549 * 9 8 3 12 12 C 1.54505 * 104.06425 * 142.80643 * 11 9 8 13 13 C 1.54484 * 104.06229 * 359.97438 * 12 11 9 14 14 H 1.08997 * 110.46342 * 94.89897 * 13 12 11 15 15 C 1.50702 * 110.36881 * 217.18895 * 13 12 11 16 16 H 1.07997 * 120.00362 * 356.83265 * 15 13 12 17 17 C 1.37883 * 119.99613 * 176.83505 * 15 13 12 18 18 N 1.31512 * 119.99979 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99841 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46882 * 59.99863 * 19 17 15 21 21 H 1.48498 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46730 * 299.99903 * 19 17 15 23 23 O 1.44420 * 104.80350 * 336.01899 * 13 12 11 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.07997 * 120.00263 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.99870 * 180.29393 * 5 4 3 31 31 H 1.08005 * 119.99315 * 179.76586 * 6 5 4 32 32 H 1.07995 * 120.00286 * 180.02562 * 7 6 5 33 33 H 1.09005 * 110.50545 * 261.45349 * 11 9 8 34 34 H 1.08996 * 110.51056 * 24.15567 * 11 9 8 35 35 H 1.08996 * 110.51244 * 241.35051 * 12 11 9 36 36 H 1.09002 * 110.62732 * 118.69618 * 12 11 9 37 37 H 0.97000 * 119.99781 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3664 2.0359 -1.1923 5 6 2.8220 3.3408 -1.1928 6 6 2.9541 4.0273 0.0000 7 6 2.6256 3.4105 1.1924 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4925 10 1 0.9675 0.7535 2.3483 11 6 3.0269 0.6758 3.0593 12 6 2.9219 0.8836 4.5867 13 6 1.6508 1.7438 4.7621 14 1 0.7878 1.1108 4.9682 15 6 1.8436 2.7443 5.8725 16 1 2.7582 2.7441 6.4469 17 6 0.8522 3.6599 6.1552 18 7 -0.2617 3.6598 5.4561 19 14 1.0914 4.9005 7.5311 20 1 2.2819 5.7390 7.2400 21 1 -0.1109 5.7664 7.6314 22 1 1.2935 4.1826 8.8152 23 8 1.4867 2.4217 3.4975 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.2678 1.4980 -2.1236 30 1 3.0785 3.8228 -2.1246 31 1 3.3137 5.0457 -0.0002 32 1 2.7283 3.9469 2.1241 33 1 2.9656 -0.3843 2.8129 34 1 3.9537 1.1045 2.6782 35 1 3.7970 1.4150 4.9609 36 1 2.8098 -0.0728 5.0976 37 1 -0.9590 4.3042 5.6548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309368591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:05 Heat of formation + Delta-G solvation = -54.740479 kcal Electronic energy + Delta-G solvation = -18040.586951 eV Core-core repulsion = 15360.240606 eV Total energy + Delta-G solvation = -2680.346345 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96072 -39.18182 -35.20243 -34.73062 -32.64723 -32.48103 -30.37037 -29.39782 -26.52397 -24.73856 -23.92422 -22.11427 -21.88936 -21.04782 -18.83949 -17.37818 -17.21569 -16.65376 -16.33227 -16.04400 -15.21119 -15.02340 -14.70129 -14.43015 -14.25631 -14.12634 -14.00817 -13.60206 -12.94863 -12.89837 -12.79927 -12.48080 -12.44219 -12.23679 -12.05172 -11.97717 -11.67176 -11.51383 -11.25342 -11.06040 -10.73555 -10.11537 -9.62803 -9.39713 -8.17738 -6.38493 0.47802 0.55499 1.38224 1.41719 1.49265 2.38631 2.86367 3.05694 3.59213 3.86396 3.94605 4.01164 4.09358 4.18813 4.26601 4.35301 4.42679 4.52829 4.58523 4.71114 4.72651 4.77776 4.84363 4.97048 5.02046 5.06823 5.14336 5.18725 5.22290 5.32475 5.41690 5.48225 5.64201 5.69846 5.71838 5.87628 6.13465 6.19385 6.52628 6.90829 7.36762 8.90533 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.006688 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.053111 B = 4185.794201 C = 4559.180741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.136 4.136 7 C -0.119 4.119 8 C -0.087 4.087 9 C 0.094 3.906 10 H 0.059 0.941 11 C -0.129 4.129 12 C -0.139 4.139 13 C 0.197 3.803 14 H -0.008 1.008 15 C -0.554 4.554 16 H 0.066 0.934 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.261 1.261 23 O -0.378 6.378 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -5.894 -13.413 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.138 4.138 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.087 4.087 9 C 0.036 3.964 10 H 0.077 0.923 11 C -0.166 4.166 12 C -0.177 4.177 13 C 0.141 3.859 14 H 0.010 0.990 15 C -0.591 4.591 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.539 5.539 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.186 1.186 23 O -0.297 6.297 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.238 -5.604 -13.461 15.493 hybrid contribution -0.234 0.800 1.209 1.469 sum 5.004 -4.804 -12.252 14.079 Atomic orbital electron populations 1.21746 0.94876 1.02448 1.01287 1.20619 0.96116 0.91599 1.03811 1.19945 0.99232 0.97380 0.91951 1.21316 0.99510 0.95412 0.97579 1.21448 0.99295 0.94886 0.98183 1.21342 1.01030 1.00676 0.92312 1.21050 0.99068 0.95172 0.98481 1.19745 1.00002 0.94947 0.94031 1.21845 0.95897 0.90557 0.88088 0.92302 1.22840 0.97904 1.00929 0.94940 1.22930 0.99093 0.99878 0.95757 1.20416 0.91373 0.91137 0.82979 0.99029 1.21434 1.03088 1.18739 1.15835 0.91583 1.25988 0.94506 0.99179 0.98367 1.70181 1.06938 1.36238 1.40585 0.85566 0.77656 0.78675 0.79456 1.19590 1.20756 1.18593 1.89438 1.89695 1.34617 1.15994 0.91955 0.90487 0.95258 0.91335 0.88267 0.82910 0.82999 0.84932 0.88686 0.88906 0.91436 0.92164 0.90620 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.72 71.98 0.70 -2.88 16 2 C -0.08 -2.02 5.38 29.85 0.16 -1.86 16 3 C -0.08 -2.52 5.13 -19.87 -0.10 -2.63 16 4 C -0.12 -2.95 9.68 22.27 0.22 -2.74 16 5 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 6 C -0.14 -4.19 10.05 22.27 0.22 -3.96 16 7 C -0.12 -4.72 9.38 22.27 0.21 -4.51 16 8 C -0.09 -3.31 4.99 -19.87 -0.10 -3.41 16 9 C 0.09 4.02 2.72 30.35 0.08 4.10 16 10 H 0.06 2.48 5.67 -2.39 -0.01 2.47 16 11 C -0.13 -4.73 6.32 31.61 0.20 -4.53 16 12 C -0.14 -5.92 6.62 31.61 0.21 -5.71 16 13 C 0.20 10.73 3.11 30.35 0.09 10.82 16 14 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 15 C -0.55 -32.40 8.78 25.60 0.22 -32.17 16 16 H 0.07 3.70 7.59 -2.91 -0.02 3.67 16 17 C 0.02 1.27 5.42 84.66 0.46 1.73 16 18 N -0.90 -56.30 12.94 21.45 0.28 -56.02 16 19 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 O -0.38 -20.87 9.42 -148.98 -1.40 -22.28 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.03 0.90 6.84 -2.39 -0.02 0.88 16 27 H 0.07 1.70 6.24 -2.39 -0.01 1.69 16 28 H 0.10 1.75 8.05 -2.39 -0.02 1.73 16 29 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 32 H 0.09 4.40 7.35 -2.91 -0.02 4.37 16 33 H 0.09 2.77 7.57 -2.38 -0.02 2.75 16 34 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 35 H 0.06 2.58 7.72 -2.39 -0.02 2.57 16 36 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -70.11 300.52 4.74 -65.37 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.04 Total: 16.28 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 2.80 Total: -50.52 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -1.40 Total: -22.28 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.11 4.74 -65.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309368591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.628 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds