Wall clock time and date at job start Mon Mar 30 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47147 * 2 1 4 4 C 1.38256 * 119.99537 * 93.68753 * 3 2 1 5 5 C 1.38216 * 119.99243 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.00582 * 0.07191 * 5 4 3 7 7 C 1.38213 * 119.99532 * 359.97438 * 6 5 4 8 8 C 1.38210 * 119.99712 * 273.82379 * 3 2 1 9 9 C 1.50694 * 120.00474 * 359.97176 * 8 3 2 10 10 H 1.09003 * 109.82116 * 33.41736 * 9 8 3 11 11 C 1.54379 * 109.83338 * 272.43606 * 9 8 3 12 12 C 1.55308 * 102.25333 * 219.12762 * 11 9 8 13 13 C 1.54938 * 100.94049 * 34.13387 * 12 11 9 14 14 H 1.09003 * 110.31408 * 82.46819 * 13 12 11 15 15 C 1.50700 * 110.31240 * 204.63701 * 13 12 11 16 16 H 1.07999 * 119.99749 * 357.17091 * 15 13 12 17 17 C 1.37883 * 120.00288 * 177.16523 * 15 13 12 18 18 N 1.31513 * 119.99700 * 180.02562 * 17 15 13 19 19 Si 1.86796 * 119.99799 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47334 * 90.00074 * 19 17 15 21 21 H 1.48503 * 109.47052 * 209.99946 * 19 17 15 22 22 H 1.48500 * 109.47301 * 329.99816 * 19 17 15 23 23 O 1.43245 * 109.82989 * 154.29907 * 9 8 3 24 24 H 1.09001 * 109.47592 * 54.78478 * 1 2 3 25 25 H 1.09004 * 109.47161 * 174.78425 * 1 2 3 26 26 H 1.09005 * 109.46975 * 294.78050 * 1 2 3 27 27 H 1.09002 * 109.47167 * 240.00137 * 2 1 3 28 28 H 1.08998 * 109.47617 * 120.00401 * 2 1 3 29 29 H 1.07996 * 120.00188 * 0.08491 * 4 3 2 30 30 H 1.08007 * 119.99641 * 180.34598 * 5 4 3 31 31 H 1.08000 * 120.00106 * 179.97438 * 6 5 4 32 32 H 1.08003 * 119.99718 * 179.97438 * 7 6 5 33 33 H 1.09001 * 110.85019 * 337.32061 * 11 9 8 34 34 H 1.09004 * 110.84723 * 100.94006 * 11 9 8 35 35 H 1.09002 * 111.12642 * 276.21861 * 12 11 9 36 36 H 1.08995 * 111.16148 * 152.06570 * 12 11 9 37 37 H 0.96997 * 119.99516 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3353 2.0468 1.1949 5 6 2.7955 3.3501 1.1949 6 6 2.9515 4.0283 0.0002 7 6 2.6476 3.4027 -1.1942 8 6 2.1874 2.0989 -1.1943 9 6 1.8548 1.4174 -2.4965 10 1 1.0219 0.7294 -2.3514 11 6 3.0884 0.6474 -3.0148 12 6 3.0205 0.9072 -4.5444 13 6 2.4442 2.3452 -4.5731 14 1 3.2400 3.0749 -4.4239 15 6 1.7381 2.5998 -5.8799 16 1 1.7330 1.8404 -6.6478 17 6 1.0983 3.8021 -6.0951 18 7 0.4818 4.0240 -7.2354 19 14 1.1075 5.1157 -4.7671 20 1 2.2896 5.9959 -4.9496 21 1 -0.1329 5.9264 -4.8642 22 1 1.1731 4.4693 -3.4318 23 8 1.5098 2.3967 -3.4833 24 1 -0.3634 0.5926 -0.8396 25 1 -0.3634 -1.0234 -0.0934 26 1 -0.3633 0.4308 0.9331 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2133 1.5172 2.1281 30 1 3.0376 3.8373 2.1279 31 1 3.3107 5.0468 0.0003 32 1 2.7690 3.9325 -2.1275 33 1 4.0064 1.0560 -2.5922 34 1 3.0005 -0.4172 -2.7979 35 1 2.3460 0.2039 -5.0328 36 1 4.0129 0.8728 -4.9939 37 1 0.0321 4.8699 -7.3869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309368593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:07 Heat of formation + Delta-G solvation = -32.915432 kcal Electronic energy + Delta-G solvation = -18244.499981 eV Core-core repulsion = 15565.100041 eV Total energy + Delta-G solvation = -2679.399940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82679 -37.82441 -34.16473 -32.68202 -31.32528 -31.05655 -29.33195 -28.17187 -24.77242 -23.72927 -22.21665 -20.88793 -20.38986 -19.82641 -16.95647 -16.37603 -16.06948 -15.18187 -14.86034 -14.61650 -13.73014 -13.60941 -13.51030 -13.33011 -13.02382 -12.57314 -12.40587 -12.13403 -11.85355 -11.78026 -11.35420 -11.08741 -10.97632 -10.79827 -10.58746 -10.45518 -10.25073 -9.86325 -9.65319 -9.39130 -8.58540 -8.49496 -8.39829 -8.11748 -6.09374 -4.17662 1.58306 1.67183 3.38849 3.45777 3.69882 3.98365 4.54602 4.78373 4.93684 4.98664 5.13710 5.26228 5.26478 5.37753 5.42728 5.45730 5.53946 5.63832 5.68827 5.80512 5.93145 5.96167 6.07935 6.15932 6.17071 6.24623 6.36205 6.39622 6.43693 6.56111 6.64863 6.72370 6.83412 7.00536 7.23527 7.28419 7.62848 8.30139 8.44722 8.92084 9.55013 11.01163 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.008230 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.249144 B = 3401.333263 C = 3920.052579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.130 4.130 7 C -0.096 4.096 8 C -0.080 4.080 9 C 0.108 3.892 10 H 0.077 0.923 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.172 3.828 14 H 0.026 0.974 15 C -0.523 4.523 16 H 0.078 0.922 17 C 0.084 3.916 18 N -0.893 5.893 19 Si 0.863 3.137 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.216 1.216 23 O -0.367 6.367 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -5.547 16.209 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.148 4.148 7 C -0.113 4.113 8 C -0.080 4.080 9 C 0.049 3.951 10 H 0.095 0.905 11 C -0.183 4.183 12 C -0.173 4.173 13 C 0.116 3.884 14 H 0.043 0.957 15 C -0.560 4.560 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.530 5.530 19 Si 0.690 3.310 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.139 1.139 23 O -0.288 6.288 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.076 -5.295 16.118 17.449 hybrid contribution 0.082 0.766 0.549 0.946 sum 4.158 -4.529 16.667 17.765 Atomic orbital electron populations 1.21769 0.94773 1.01667 1.02400 1.20555 0.96284 0.92896 1.02581 1.19669 0.99773 0.96223 0.92524 1.20882 1.01160 0.95208 0.97001 1.21017 1.00976 0.94971 0.97674 1.21133 1.01206 0.99785 0.92665 1.21219 0.97047 0.94612 0.98467 1.20323 0.97965 0.94760 0.94950 1.21503 0.96171 0.90562 0.86850 0.90529 1.23111 0.97968 0.99773 0.97467 1.23150 1.01092 0.99677 0.93341 1.20967 0.89088 0.91840 0.86460 0.95676 1.21037 1.35754 1.01938 0.97287 0.90417 1.25039 0.93352 0.98536 0.95091 1.69925 1.34077 1.24907 1.24138 0.87111 0.77024 0.80926 0.85976 1.21153 1.21843 1.13900 1.88933 1.53930 1.55089 1.30820 0.91899 0.92514 0.92827 0.90748 0.91464 0.86649 0.86700 0.86540 0.85369 0.91460 0.91317 0.90892 0.91482 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.15 0.36 -1.39 16 2 C -0.09 -1.04 5.37 -27.88 -0.15 -1.19 16 3 C -0.08 -1.20 5.13 -104.62 -0.54 -1.73 16 4 C -0.12 -1.65 9.69 -39.58 -0.38 -2.03 16 5 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 7 C -0.10 -1.71 9.36 -39.58 -0.37 -2.08 16 8 C -0.08 -1.38 4.92 -104.63 -0.51 -1.90 16 9 C 0.11 2.01 3.01 -27.16 -0.08 1.93 16 10 H 0.08 1.37 5.76 -51.93 -0.30 1.07 16 11 C -0.15 -2.42 6.17 -24.78 -0.15 -2.57 16 12 C -0.13 -2.63 6.53 -24.48 -0.16 -2.79 16 13 C 0.17 4.08 2.68 -26.86 -0.07 4.01 16 14 H 0.03 0.61 7.64 -51.93 -0.40 0.21 16 15 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 16 H 0.08 2.36 8.01 -52.49 -0.42 1.94 16 17 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 18 N -0.89 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.86 21.94 27.07 -169.99 -4.60 17.34 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.22 -5.28 4.38 56.52 0.25 -5.04 16 23 O -0.37 -8.59 6.61 -35.23 -0.23 -8.82 16 24 H 0.06 0.86 7.09 -51.93 -0.37 0.50 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.90 6.14 -51.93 -0.32 0.58 16 28 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.13 2.53 6.40 -52.48 -0.34 2.19 16 33 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 34 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 35 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -31.15 293.24 -8.52 -39.67 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.60 Total: 1.34 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -3.28 Total: -27.07 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.23 Total: -8.82 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.60 Total: 17.34 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.15 -8.52 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309368593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.758 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds