Wall clock time and date at job start Mon Mar 30 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47065 * 2 1 4 4 C 1.38254 * 119.99884 * 265.02066 * 3 2 1 5 5 C 1.38216 * 119.99893 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00035 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00426 * 359.74606 * 6 5 4 8 8 C 1.38210 * 120.00173 * 84.99827 * 3 2 1 9 9 C 1.50705 * 119.99870 * 0.02562 * 8 3 2 10 10 H 1.08995 * 109.89569 * 324.48026 * 9 8 3 11 11 C 1.54383 * 109.82873 * 85.41513 * 9 8 3 12 12 C 1.55566 * 102.27674 * 140.86779 * 11 9 8 13 13 C 1.54944 * 100.82489 * 325.88222 * 12 11 9 14 14 H 1.09002 * 110.30953 * 277.47426 * 13 12 11 15 15 C 1.50695 * 110.30802 * 155.40499 * 13 12 11 16 16 H 1.07997 * 120.00232 * 1.38930 * 15 13 12 17 17 C 1.37882 * 120.00227 * 181.38929 * 15 13 12 18 18 N 1.31522 * 119.99432 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00331 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47603 * 89.99893 * 19 17 15 21 21 H 1.48501 * 109.46933 * 210.00047 * 19 17 15 22 22 H 1.48498 * 109.46992 * 329.99486 * 19 17 15 23 23 O 1.43235 * 109.82925 * 203.54284 * 9 8 3 24 24 H 1.08997 * 109.47300 * 60.00154 * 1 2 3 25 25 H 1.08999 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47549 * 299.99938 * 1 2 3 27 27 H 1.08995 * 109.47139 * 239.99715 * 2 1 3 28 28 H 1.08998 * 109.46847 * 120.00113 * 2 1 3 29 29 H 1.08002 * 120.00288 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.00368 * 179.97438 * 5 4 3 31 31 H 1.08010 * 120.00010 * 179.97438 * 6 5 4 32 32 H 1.07996 * 120.00535 * 180.27540 * 7 6 5 33 33 H 1.09007 * 110.84628 * 259.06208 * 11 9 8 34 34 H 1.09000 * 110.84920 * 22.67622 * 11 9 8 35 35 H 1.08997 * 111.22347 * 207.97660 * 12 11 9 36 36 H 1.09003 * 111.13190 * 83.74257 * 12 11 9 37 37 H 0.97003 * 119.99596 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8209 3.3412 -1.1929 6 6 2.9523 4.0279 -0.0002 7 6 2.6185 3.4130 1.1918 8 6 2.1642 2.1071 1.1924 9 6 1.8063 1.4345 2.4926 10 1 0.9526 0.7731 2.3453 11 6 3.0131 0.6240 3.0125 12 6 2.9503 0.8834 4.5451 13 6 2.4203 2.3392 4.5723 14 1 3.2398 3.0429 4.4264 15 6 1.7200 2.6165 5.8775 16 1 1.6689 1.8499 6.6365 17 6 1.1446 3.8491 6.1029 18 7 1.2073 4.7828 5.1789 19 14 0.2772 4.1931 7.7211 20 1 1.2505 4.7460 8.6968 21 1 -0.8136 5.1760 7.4988 22 1 -0.2952 2.9307 8.2540 23 8 1.4909 2.4227 3.4802 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.2576 1.5016 -2.1246 30 1 3.0778 3.8232 -2.1246 31 1 3.3123 5.0462 -0.0002 32 1 2.7170 3.9509 2.1231 33 1 2.8914 -0.4368 2.7934 34 1 3.9449 1.0034 2.5929 35 1 3.9397 0.8169 4.9974 36 1 2.2518 0.2019 5.0306 37 1 0.8022 5.6499 5.3373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309368596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:10 Heat of formation + Delta-G solvation = -38.393159 kcal Electronic energy + Delta-G solvation = -18095.125031 eV Core-core repulsion = 15415.487559 eV Total energy + Delta-G solvation = -2679.637472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58522 -37.51841 -34.00817 -32.68574 -30.98160 -30.81642 -29.12768 -27.71786 -24.70271 -23.58979 -22.11608 -20.68515 -20.33988 -19.67374 -16.68173 -16.16995 -15.73847 -14.93310 -14.62196 -14.50122 -13.80406 -13.49728 -13.25691 -13.22300 -12.83604 -12.39924 -12.13921 -11.81531 -11.71756 -11.59161 -11.14995 -10.94958 -10.90942 -10.56611 -10.48472 -10.33055 -10.27933 -10.17076 -9.72217 -9.09478 -8.57809 -8.33292 -8.19657 -7.82499 -6.00636 -4.13092 1.77620 1.88458 3.31016 3.38089 3.41167 4.19178 4.42905 4.97270 5.09324 5.14353 5.30844 5.40838 5.45202 5.50854 5.57078 5.61895 5.68510 5.78567 5.84848 5.99331 6.03700 6.12607 6.27194 6.31670 6.37898 6.41624 6.53177 6.58415 6.65895 6.74701 6.80792 6.91272 7.06236 7.26718 7.51025 7.59250 7.89555 8.26489 8.63308 9.03175 9.57776 11.06963 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.006710 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.336830 B = 4172.174047 C = 4564.717735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.129 4.129 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.086 4.086 8 C -0.079 4.079 9 C 0.108 3.892 10 H 0.071 0.929 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.210 3.790 14 H 0.027 0.973 15 C -0.535 4.535 16 H 0.062 0.938 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.349 6.349 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -6.676 -10.652 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.104 4.104 8 C -0.080 4.080 9 C 0.049 3.951 10 H 0.088 0.912 11 C -0.183 4.183 12 C -0.185 4.185 13 C 0.155 3.845 14 H 0.045 0.955 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.128 4.128 18 N -0.499 5.499 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 O -0.268 6.268 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.323 -6.341 -10.709 12.661 hybrid contribution -0.321 0.223 0.697 0.799 sum 2.002 -6.118 -10.012 11.903 Atomic orbital electron populations 1.21764 0.94927 1.01320 1.02554 1.20535 0.96187 0.93112 1.02373 1.19648 1.00086 0.96103 0.92680 1.20834 1.01648 0.95335 0.96883 1.20997 1.01309 0.94940 0.97655 1.21147 1.01223 0.99749 0.92709 1.21292 0.95781 0.94473 0.98833 1.20366 0.97922 0.94820 0.94853 1.21463 0.95761 0.90513 0.87387 0.91156 1.23138 0.98400 0.99258 0.97496 1.23386 1.00797 1.00985 0.93340 1.20531 0.88984 0.89167 0.85856 0.95507 1.21104 1.38651 0.98489 0.98955 0.91954 1.25066 0.95232 0.96107 0.96367 1.70023 1.42754 1.04223 1.32860 0.86629 0.79467 0.78219 0.83831 1.20567 1.21111 1.19782 1.88877 1.54663 1.53266 1.29978 0.92830 0.92724 0.91881 0.91665 0.90871 0.86920 0.86938 0.86622 0.84396 0.91775 0.91634 0.91903 0.91538 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.73 37.16 0.36 -1.54 16 2 C -0.08 -1.13 5.38 -27.89 -0.15 -1.28 16 3 C -0.09 -1.36 5.13 -104.63 -0.54 -1.90 16 4 C -0.13 -1.89 9.68 -39.58 -0.38 -2.27 16 5 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 6 C -0.13 -2.18 10.05 -39.59 -0.40 -2.57 16 7 C -0.09 -1.70 9.36 -39.58 -0.37 -2.07 16 8 C -0.08 -1.50 4.93 -104.62 -0.52 -2.02 16 9 C 0.11 2.20 3.02 -27.16 -0.08 2.11 16 10 H 0.07 1.37 5.69 -51.93 -0.30 1.08 16 11 C -0.15 -2.63 6.10 -24.64 -0.15 -2.78 16 12 C -0.15 -3.04 6.55 -24.34 -0.16 -3.20 16 13 C 0.21 5.38 3.24 -26.86 -0.09 5.29 16 14 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 15 C -0.53 -14.97 8.80 -34.44 -0.30 -15.27 16 16 H 0.06 1.69 7.76 -52.49 -0.41 1.29 16 17 C 0.08 2.21 5.42 -17.81 -0.10 2.12 16 18 N -0.86 -25.46 12.99 55.43 0.72 -24.74 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 O -0.35 -9.00 9.11 -35.23 -0.32 -9.32 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.93 6.80 -51.93 -0.35 0.58 16 27 H 0.06 0.73 8.05 -51.93 -0.42 0.32 16 28 H 0.07 0.98 6.03 -51.93 -0.31 0.66 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.14 3.13 7.32 -52.49 -0.38 2.75 16 33 H 0.06 0.99 7.47 -51.93 -0.39 0.60 16 34 H 0.06 1.16 7.84 -51.93 -0.41 0.76 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -30.14 300.46 -8.84 -38.98 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.48 Total: 1.88 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -3.27 Total: -27.72 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.72 Total: -24.74 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.32 Total: -9.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.14 -8.84 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309368596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.590 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds