Wall clock time and date at job start Mon Mar 30 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47065 * 2 1 4 4 C 1.38254 * 119.99884 * 265.02066 * 3 2 1 5 5 C 1.38216 * 119.99893 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00035 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00426 * 359.74606 * 6 5 4 8 8 C 1.38210 * 120.00173 * 84.99827 * 3 2 1 9 9 C 1.50705 * 119.99870 * 0.02562 * 8 3 2 10 10 H 1.08995 * 109.89569 * 324.48026 * 9 8 3 11 11 C 1.54383 * 109.82873 * 85.41513 * 9 8 3 12 12 C 1.55566 * 102.27674 * 140.86779 * 11 9 8 13 13 C 1.54944 * 100.82489 * 325.88222 * 12 11 9 14 14 H 1.09002 * 110.30953 * 277.47426 * 13 12 11 15 15 C 1.50695 * 110.30802 * 155.40499 * 13 12 11 16 16 H 1.07997 * 120.00232 * 1.38930 * 15 13 12 17 17 C 1.37882 * 120.00227 * 181.38929 * 15 13 12 18 18 N 1.31522 * 119.99432 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00331 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47603 * 89.99893 * 19 17 15 21 21 H 1.48501 * 109.46933 * 210.00047 * 19 17 15 22 22 H 1.48498 * 109.46992 * 329.99486 * 19 17 15 23 23 O 1.43235 * 109.82925 * 203.54284 * 9 8 3 24 24 H 1.08997 * 109.47300 * 60.00154 * 1 2 3 25 25 H 1.08999 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47549 * 299.99938 * 1 2 3 27 27 H 1.08995 * 109.47139 * 239.99715 * 2 1 3 28 28 H 1.08998 * 109.46847 * 120.00113 * 2 1 3 29 29 H 1.08002 * 120.00288 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.00368 * 179.97438 * 5 4 3 31 31 H 1.08010 * 120.00010 * 179.97438 * 6 5 4 32 32 H 1.07996 * 120.00535 * 180.27540 * 7 6 5 33 33 H 1.09007 * 110.84628 * 259.06208 * 11 9 8 34 34 H 1.09000 * 110.84920 * 22.67622 * 11 9 8 35 35 H 1.08997 * 111.22347 * 207.97660 * 12 11 9 36 36 H 1.09003 * 111.13190 * 83.74257 * 12 11 9 37 37 H 0.97003 * 119.99596 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8209 3.3412 -1.1929 6 6 2.9523 4.0279 -0.0002 7 6 2.6185 3.4130 1.1918 8 6 2.1642 2.1071 1.1924 9 6 1.8063 1.4345 2.4926 10 1 0.9526 0.7731 2.3453 11 6 3.0131 0.6240 3.0125 12 6 2.9503 0.8834 4.5451 13 6 2.4203 2.3392 4.5723 14 1 3.2398 3.0429 4.4264 15 6 1.7200 2.6165 5.8775 16 1 1.6689 1.8499 6.6365 17 6 1.1446 3.8491 6.1029 18 7 1.2073 4.7828 5.1789 19 14 0.2772 4.1931 7.7211 20 1 1.2505 4.7460 8.6968 21 1 -0.8136 5.1760 7.4988 22 1 -0.2952 2.9307 8.2540 23 8 1.4909 2.4227 3.4802 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.2576 1.5016 -2.1246 30 1 3.0778 3.8232 -2.1246 31 1 3.3123 5.0462 -0.0002 32 1 2.7170 3.9509 2.1231 33 1 2.8914 -0.4368 2.7934 34 1 3.9449 1.0034 2.5929 35 1 3.9397 0.8169 4.9974 36 1 2.2518 0.2019 5.0306 37 1 0.8022 5.6499 5.3373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309368596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:10 Heat of formation + Delta-G solvation = -54.858899 kcal Electronic energy + Delta-G solvation = -18095.839039 eV Core-core repulsion = 15415.487559 eV Total energy + Delta-G solvation = -2680.351480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01693 -39.13511 -35.21749 -34.70596 -32.63457 -32.41621 -30.36592 -29.43276 -26.55591 -24.73995 -23.66660 -22.14766 -22.00187 -21.08599 -18.68563 -17.65909 -17.24343 -16.66369 -16.22535 -16.01454 -15.40339 -14.77927 -14.65523 -14.45866 -14.26304 -14.01304 -13.77487 -13.60900 -12.95270 -12.88068 -12.76864 -12.49542 -12.39567 -12.26028 -12.15701 -12.00222 -11.69468 -11.53290 -11.36778 -11.00779 -10.71362 -9.95285 -9.59674 -9.35780 -8.15577 -6.36681 0.49619 0.57050 1.38972 1.40848 1.51526 2.39756 2.86726 3.07962 3.67782 3.80900 3.90148 3.98710 4.07182 4.19886 4.28205 4.36760 4.49266 4.51882 4.59218 4.68267 4.74714 4.79087 4.86927 4.92372 5.07270 5.09089 5.14183 5.18008 5.23721 5.33080 5.44297 5.54235 5.65521 5.72020 5.76456 5.91807 6.17173 6.21750 6.60316 7.04977 7.39666 8.92224 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.006710 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.336830 B = 4172.174047 C = 4564.717735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.139 4.139 7 C -0.120 4.120 8 C -0.101 4.101 9 C 0.100 3.900 10 H 0.078 0.922 11 C -0.130 4.130 12 C -0.140 4.140 13 C 0.204 3.796 14 H -0.012 1.012 15 C -0.557 4.557 16 H 0.066 0.934 17 C 0.021 3.979 18 N -0.901 5.901 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.264 1.264 23 O -0.385 6.385 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -8.770 -12.531 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.157 4.157 7 C -0.138 4.138 8 C -0.101 4.101 9 C 0.042 3.958 10 H 0.095 0.905 11 C -0.167 4.167 12 C -0.177 4.177 13 C 0.149 3.851 14 H 0.005 0.995 15 C -0.594 4.594 16 H 0.085 0.915 17 C -0.181 4.181 18 N -0.539 5.539 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.188 1.188 23 O -0.305 6.305 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.219 -8.453 -12.585 15.322 hybrid contribution -0.269 0.873 1.170 1.485 sum 1.949 -7.580 -11.415 13.840 Atomic orbital electron populations 1.21745 0.94703 1.02511 1.01383 1.20620 0.96252 0.91342 1.03877 1.19968 0.99204 0.97449 0.91859 1.21324 0.99607 0.95278 0.97770 1.21411 0.99570 0.95068 0.97923 1.21305 1.01305 1.00511 0.92571 1.21052 0.99102 0.95471 0.98212 1.20304 0.99595 0.94775 0.95471 1.21691 0.97001 0.89975 0.87159 0.90469 1.23077 0.97475 1.01081 0.95088 1.23269 1.01302 0.97502 0.95663 1.20372 0.87909 0.91430 0.85432 0.99486 1.21556 1.38677 0.98892 1.00295 0.91543 1.25991 0.96056 0.95920 1.00103 1.70195 1.43952 1.04601 1.35119 0.85510 0.78257 0.78223 0.79330 1.19393 1.21026 1.18780 1.88771 1.54961 1.55481 1.31281 0.92210 0.90368 0.94831 0.88491 0.91014 0.82936 0.83187 0.85596 0.89360 0.87984 0.91558 0.90408 0.91139 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.73 71.98 0.70 -2.65 16 2 C -0.08 -1.94 5.38 29.85 0.16 -1.78 16 3 C -0.08 -2.53 5.13 -19.87 -0.10 -2.63 16 4 C -0.12 -3.11 9.68 22.27 0.22 -2.89 16 5 C -0.12 -3.25 10.05 22.27 0.22 -3.02 16 6 C -0.14 -4.67 10.05 22.27 0.22 -4.45 16 7 C -0.12 -5.05 9.36 22.27 0.21 -4.85 16 8 C -0.10 -3.91 4.93 -19.86 -0.10 -4.00 16 9 C 0.10 4.17 3.02 30.32 0.09 4.26 16 10 H 0.08 3.04 5.69 -2.39 -0.01 3.03 16 11 C -0.13 -4.63 6.10 31.95 0.19 -4.44 16 12 C -0.14 -5.83 6.55 32.14 0.21 -5.62 16 13 C 0.20 11.05 3.24 30.51 0.10 11.15 16 14 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 15 C -0.56 -32.39 8.80 25.60 0.23 -32.17 16 16 H 0.07 3.69 7.76 -2.91 -0.02 3.66 16 17 C 0.02 1.25 5.42 84.65 0.46 1.71 16 18 N -0.90 -56.17 12.99 21.45 0.28 -55.89 16 19 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 O -0.39 -21.10 9.11 -148.98 -1.36 -22.45 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.03 0.95 6.80 -2.39 -0.02 0.94 16 27 H 0.10 1.67 8.05 -2.39 -0.02 1.65 16 28 H 0.07 1.68 6.03 -2.39 -0.01 1.67 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.09 4.52 7.32 -2.91 -0.02 4.50 16 33 H 0.10 2.86 7.47 -2.38 -0.02 2.84 16 34 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 35 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.07 2.86 8.04 -2.39 -0.02 2.84 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.16 300.46 4.80 -65.36 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.04 Total: 17.25 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 2.81 Total: -51.38 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.28 Total: -55.89 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.36 Total: -22.45 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.16 4.80 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309368596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.500 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds