Wall clock time and date at job start Mon Mar 30 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38238 * 119.99980 * 2 1 4 4 C 1.38232 * 120.00258 * 180.24913 * 3 2 1 5 5 C 1.38234 * 120.00071 * 359.79538 * 4 3 2 6 6 C 1.38235 * 119.99982 * 359.95463 * 5 4 3 7 7 C 1.50692 * 120.00038 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00439 * 179.76932 * 2 1 3 9 9 C 1.50697 * 119.99924 * 359.97438 * 8 2 1 10 10 H 1.09004 * 110.27511 * 166.26886 * 9 8 2 11 11 C 1.54943 * 110.31177 * 288.36183 * 9 8 2 12 12 C 1.55302 * 100.94594 * 155.45908 * 11 9 8 13 13 C 1.54385 * 102.24785 * 325.86930 * 12 11 9 14 14 H 1.08999 * 109.82903 * 261.74606 * 13 12 11 15 15 C 1.50702 * 109.82858 * 140.87272 * 13 12 11 16 16 H 1.08005 * 120.00342 * 0.17846 * 15 13 12 17 17 C 1.37876 * 120.00097 * 180.18553 * 15 13 12 18 18 N 1.31519 * 119.99904 * 0.26884 * 17 15 13 19 19 Si 1.86793 * 120.00367 * 179.97438 * 17 15 13 20 20 H 1.48510 * 109.47210 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47391 * 119.99410 * 19 17 15 22 22 H 1.48497 * 109.47621 * 239.99930 * 19 17 15 23 23 O 1.43233 * 107.66956 * 21.31049 * 13 12 11 24 24 H 1.09003 * 109.46717 * 263.18923 * 1 2 3 25 25 H 1.08996 * 109.47454 * 23.19469 * 1 2 3 26 26 H 1.09006 * 109.46665 * 143.19719 * 1 2 3 27 27 H 1.08007 * 119.99694 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00007 * 179.76767 * 4 3 2 29 29 H 1.08003 * 120.00003 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47224 * 270.01674 * 7 6 5 31 31 H 1.09001 * 109.47408 * 30.02028 * 7 6 5 32 32 H 1.09007 * 109.47064 * 150.02018 * 7 6 5 33 33 H 1.09003 * 111.12257 * 37.53663 * 11 9 8 34 34 H 1.09000 * 111.12674 * 273.38012 * 11 9 8 35 35 H 1.08996 * 110.85027 * 207.68356 * 12 11 9 36 36 H 1.09000 * 110.85189 * 84.05502 * 12 11 9 37 37 H 0.96999 * 119.99802 * 359.73190 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0052 5 6 4.2717 0.0002 -0.0061 6 6 3.5806 -1.1970 -0.0009 7 6 4.3341 -2.5020 -0.0013 8 6 2.1982 -1.1971 0.0048 9 6 1.4448 -2.5022 0.0107 10 1 2.1161 -3.3269 -0.2288 11 6 0.7800 -2.7333 1.3910 12 6 -0.3863 -3.6819 1.0015 13 6 -0.7693 -3.1702 -0.4038 14 1 -1.6299 -2.5050 -0.3332 15 6 -1.0969 -4.3361 -1.3007 16 1 -1.0438 -5.3443 -0.9170 17 6 -1.4644 -4.1158 -2.6112 18 7 -1.5239 -2.8885 -3.0800 19 14 -1.8698 -5.5610 -3.7231 20 1 -1.7212 -6.8278 -2.9625 21 1 -3.2677 -5.4355 -4.2082 22 1 -0.9423 -5.5688 -4.8828 23 8 0.3558 -2.4552 -0.9277 24 1 -0.3633 -0.1219 1.0205 25 1 -0.3634 0.9445 -0.4047 26 1 -0.3633 -0.8229 -0.6157 27 1 1.6580 2.1325 0.0004 28 1 4.1204 2.1326 -0.0090 29 1 5.3517 0.0002 -0.0106 30 1 4.5119 -2.8186 -1.0291 31 1 5.2885 -2.3707 0.5087 32 1 3.7470 -3.2608 0.5161 33 1 0.4040 -1.7987 1.8073 34 1 1.4683 -3.2200 2.0820 35 1 -1.2211 -3.5750 1.6941 36 1 -0.0467 -4.7168 0.9582 37 1 -1.3130 -2.1381 -2.5028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309372427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:29 Heat of formation + Delta-G solvation = -34.785796 kcal Electronic energy + Delta-G solvation = -18402.130291 eV Core-core repulsion = 15722.649247 eV Total energy + Delta-G solvation = -2679.481045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87635 -37.80022 -33.29007 -33.03558 -31.68126 -31.06539 -28.34225 -26.60680 -26.33400 -24.13649 -21.99413 -20.63814 -20.30319 -19.89291 -17.03375 -16.37165 -15.79570 -14.99776 -14.31679 -13.89234 -13.76097 -13.67668 -13.54520 -12.95660 -12.85744 -12.60355 -12.35127 -12.17494 -11.64948 -11.41508 -11.22477 -11.09201 -10.80845 -10.71943 -10.60742 -10.43859 -10.25223 -10.08112 -9.78978 -9.02083 -8.42404 -8.27093 -8.15210 -7.78343 -6.32584 -4.11020 1.65677 1.71315 3.44900 3.49115 3.61809 3.99527 4.54728 4.86063 5.09018 5.16240 5.24925 5.31658 5.39063 5.50426 5.52213 5.61703 5.74401 5.80794 5.88825 5.93628 6.09697 6.12148 6.14675 6.24810 6.28201 6.39696 6.42450 6.48058 6.56393 6.70598 6.77994 6.84825 6.99761 7.20747 7.34386 7.47786 8.12276 8.26792 8.56062 8.91033 9.71695 11.08772 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.006919 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.219130 B = 4046.009452 C = 4122.505630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.136 4.136 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.078 4.078 9 C 0.118 3.882 10 H 0.069 0.931 11 C -0.150 4.150 12 C -0.137 4.137 13 C 0.186 3.814 14 H 0.033 0.967 15 C -0.619 4.619 16 H 0.052 0.948 17 C 0.033 3.967 18 N -0.891 5.891 19 Si 1.072 2.928 20 H -0.290 1.290 21 H -0.287 1.287 22 H -0.287 1.287 23 O -0.363 6.363 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 4.416 8.061 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 C -0.154 4.154 4 C -0.139 4.139 5 C -0.154 4.154 6 C -0.077 4.077 7 C -0.173 4.173 8 C -0.078 4.078 9 C 0.060 3.940 10 H 0.087 0.913 11 C -0.187 4.187 12 C -0.175 4.175 13 C 0.131 3.869 14 H 0.050 0.950 15 C -0.657 4.657 16 H 0.071 0.929 17 C -0.176 4.176 18 N -0.526 5.526 19 Si 0.900 3.100 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.213 1.213 23 O -0.283 6.283 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.121 4.119 6.341 11.096 hybrid contribution 0.609 0.444 1.775 1.928 sum 8.730 4.563 8.116 12.763 Atomic orbital electron populations 1.21487 0.91056 1.05099 1.02758 1.19798 0.96597 0.92000 0.96416 1.21024 0.94156 0.97411 1.02789 1.20990 0.94289 0.97537 1.01091 1.20846 0.99123 0.92024 1.03393 1.19701 0.93038 0.95329 0.99681 1.20835 0.99268 0.94668 1.02547 1.19792 0.92622 0.95079 1.00281 1.21592 0.90633 0.92502 0.89313 0.91339 1.23284 0.98251 1.00105 0.97088 1.23088 0.96593 0.99214 0.98557 1.20467 0.85145 0.91602 0.89679 0.94975 1.22282 1.51678 0.92693 0.99039 0.92933 1.25798 0.93269 1.01693 0.96801 1.70625 1.43206 0.99187 1.39607 0.83528 0.76738 0.74230 0.75478 1.21588 1.21319 1.21323 1.88657 1.22637 1.74778 1.42251 0.92317 0.92921 0.86042 0.86602 0.86688 0.86626 0.91035 0.91935 0.91192 0.91164 0.91622 0.92149 0.91366 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.70 36.00 0.31 -2.42 16 2 C -0.05 -0.88 5.68 -104.63 -0.59 -1.47 16 3 C -0.14 -2.14 9.67 -39.58 -0.38 -2.53 16 4 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 5 C -0.14 -1.97 9.70 -39.58 -0.38 -2.36 16 6 C -0.08 -1.26 5.88 -104.63 -0.62 -1.88 16 7 C -0.12 -1.61 9.26 36.00 0.33 -1.27 16 8 C -0.08 -1.45 5.06 -104.62 -0.53 -1.98 16 9 C 0.12 2.39 3.04 -26.86 -0.08 2.31 16 10 H 0.07 1.39 5.93 -51.93 -0.31 1.08 16 11 C -0.15 -2.69 6.26 -24.49 -0.15 -2.85 16 12 C -0.14 -2.79 6.53 -24.78 -0.16 -2.95 16 13 C 0.19 4.64 2.41 -27.16 -0.07 4.57 16 14 H 0.03 0.85 7.61 -51.93 -0.40 0.46 16 15 C -0.62 -17.40 8.75 -34.44 -0.30 -17.70 16 16 H 0.05 1.46 7.52 -52.48 -0.39 1.07 16 17 C 0.03 0.94 5.41 -17.82 -0.10 0.85 16 18 N -0.89 -27.23 13.55 55.43 0.75 -26.48 16 19 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 O -0.36 -8.99 6.67 -35.23 -0.24 -9.23 16 24 H 0.06 0.99 7.03 -51.93 -0.37 0.63 16 25 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 26 H 0.12 2.68 3.90 -51.93 -0.20 2.48 16 27 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.07 0.97 6.36 -51.93 -0.33 0.64 16 33 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 37 H 0.28 8.57 6.54 -40.82 -0.27 8.30 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -30.89 291.28 -8.44 -39.33 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.15 Total: 3.45 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -3.12 Total: -31.80 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.75 Total: -26.48 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.24 Total: -9.23 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.89 -8.44 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.546 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds