Wall clock time and date at job start Mon Mar 30 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38238 * 119.99980 * 2 1 4 4 C 1.38232 * 120.00258 * 180.24913 * 3 2 1 5 5 C 1.38234 * 120.00071 * 359.79538 * 4 3 2 6 6 C 1.38235 * 119.99982 * 359.95463 * 5 4 3 7 7 C 1.50692 * 120.00038 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00439 * 179.76932 * 2 1 3 9 9 C 1.50697 * 119.99924 * 359.97438 * 8 2 1 10 10 H 1.09004 * 110.27511 * 166.26886 * 9 8 2 11 11 C 1.54943 * 110.31177 * 288.36183 * 9 8 2 12 12 C 1.55302 * 100.94594 * 155.45908 * 11 9 8 13 13 C 1.54385 * 102.24785 * 325.86930 * 12 11 9 14 14 H 1.08999 * 109.82903 * 261.74606 * 13 12 11 15 15 C 1.50702 * 109.82858 * 140.87272 * 13 12 11 16 16 H 1.08005 * 120.00342 * 0.17846 * 15 13 12 17 17 C 1.37876 * 120.00097 * 180.18553 * 15 13 12 18 18 N 1.31519 * 119.99904 * 0.26884 * 17 15 13 19 19 Si 1.86793 * 120.00367 * 179.97438 * 17 15 13 20 20 H 1.48510 * 109.47210 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47391 * 119.99410 * 19 17 15 22 22 H 1.48497 * 109.47621 * 239.99930 * 19 17 15 23 23 O 1.43233 * 107.66956 * 21.31049 * 13 12 11 24 24 H 1.09003 * 109.46717 * 263.18923 * 1 2 3 25 25 H 1.08996 * 109.47454 * 23.19469 * 1 2 3 26 26 H 1.09006 * 109.46665 * 143.19719 * 1 2 3 27 27 H 1.08007 * 119.99694 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00007 * 179.76767 * 4 3 2 29 29 H 1.08003 * 120.00003 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47224 * 270.01674 * 7 6 5 31 31 H 1.09001 * 109.47408 * 30.02028 * 7 6 5 32 32 H 1.09007 * 109.47064 * 150.02018 * 7 6 5 33 33 H 1.09003 * 111.12257 * 37.53663 * 11 9 8 34 34 H 1.09000 * 111.12674 * 273.38012 * 11 9 8 35 35 H 1.08996 * 110.85027 * 207.68356 * 12 11 9 36 36 H 1.09000 * 110.85189 * 84.05502 * 12 11 9 37 37 H 0.96999 * 119.99802 * 359.73190 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0052 5 6 4.2717 0.0002 -0.0061 6 6 3.5806 -1.1970 -0.0009 7 6 4.3341 -2.5020 -0.0013 8 6 2.1982 -1.1971 0.0048 9 6 1.4448 -2.5022 0.0107 10 1 2.1161 -3.3269 -0.2288 11 6 0.7800 -2.7333 1.3910 12 6 -0.3863 -3.6819 1.0015 13 6 -0.7693 -3.1702 -0.4038 14 1 -1.6299 -2.5050 -0.3332 15 6 -1.0969 -4.3361 -1.3007 16 1 -1.0438 -5.3443 -0.9170 17 6 -1.4644 -4.1158 -2.6112 18 7 -1.5239 -2.8885 -3.0800 19 14 -1.8698 -5.5610 -3.7231 20 1 -1.7212 -6.8278 -2.9625 21 1 -3.2677 -5.4355 -4.2082 22 1 -0.9423 -5.5688 -4.8828 23 8 0.3558 -2.4552 -0.9277 24 1 -0.3633 -0.1219 1.0205 25 1 -0.3634 0.9445 -0.4047 26 1 -0.3633 -0.8229 -0.6157 27 1 1.6580 2.1325 0.0004 28 1 4.1204 2.1326 -0.0090 29 1 5.3517 0.0002 -0.0106 30 1 4.5119 -2.8186 -1.0291 31 1 5.2885 -2.3707 0.5087 32 1 3.7470 -3.2608 0.5161 33 1 0.4040 -1.7987 1.8073 34 1 1.4683 -3.2200 2.0820 35 1 -1.2211 -3.5750 1.6941 36 1 -0.0467 -4.7168 0.9582 37 1 -1.3130 -2.1381 -2.5028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309372427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:28 Heat of formation + Delta-G solvation = -51.375619 kcal Electronic energy + Delta-G solvation = -18402.849680 eV Core-core repulsion = 15722.649247 eV Total energy + Delta-G solvation = -2680.200434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29541 -39.34877 -35.02420 -34.49173 -33.22155 -32.73656 -29.92407 -28.12819 -27.54141 -26.00139 -23.58336 -22.34136 -21.56078 -21.34909 -19.09661 -17.87154 -17.16007 -16.40564 -15.76307 -15.69443 -15.46713 -15.26157 -14.95006 -14.54180 -14.21393 -13.78833 -13.69507 -13.60983 -13.36165 -12.81425 -12.69482 -12.62758 -12.50788 -12.25832 -12.14338 -11.92616 -11.87909 -11.75575 -11.45907 -10.88579 -10.59324 -9.79690 -9.43428 -9.40306 -8.59788 -6.38716 0.42202 0.48594 1.51547 1.61326 1.76808 2.57139 2.73260 3.14116 3.51297 3.76301 3.82616 3.96318 4.01006 4.12961 4.13738 4.38550 4.40689 4.47852 4.56213 4.61569 4.72514 4.76691 4.79228 4.82399 4.88857 4.95688 4.99419 5.10064 5.15916 5.27664 5.37547 5.58357 5.60398 5.73467 5.86016 6.00289 6.12417 6.18030 6.59399 6.70822 7.54129 8.80742 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.006919 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.219130 B = 4046.009452 C = 4122.505630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.143 4.143 4 C -0.114 4.114 5 C -0.133 4.133 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.106 4.106 9 C 0.111 3.889 10 H 0.063 0.937 11 C -0.133 4.133 12 C -0.131 4.131 13 C 0.183 3.817 14 H 0.004 0.996 15 C -0.634 4.634 16 H 0.050 0.950 17 C -0.021 4.021 18 N -0.922 5.922 19 Si 1.118 2.882 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.284 1.284 23 O -0.387 6.387 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 4.710 9.038 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.161 4.161 4 C -0.132 4.132 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.172 4.172 8 C -0.106 4.106 9 C 0.053 3.947 10 H 0.080 0.920 11 C -0.171 4.171 12 C -0.169 4.169 13 C 0.128 3.872 14 H 0.022 0.978 15 C -0.672 4.672 16 H 0.069 0.931 17 C -0.222 4.222 18 N -0.558 5.558 19 Si 0.940 3.060 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.210 1.210 23 O -0.308 6.308 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.152 0.848 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.195 4.413 7.345 13.317 hybrid contribution 0.046 0.428 1.517 1.576 sum 10.241 4.841 8.862 14.382 Atomic orbital electron populations 1.21316 0.92127 1.03902 1.02447 1.19900 0.96198 0.93131 0.98177 1.21285 0.95254 0.97141 1.02390 1.21439 0.93719 0.99120 0.98931 1.21275 1.00860 0.91260 1.01706 1.20036 0.92270 0.97257 0.99253 1.20870 1.00350 0.93374 1.02608 1.19782 0.93811 0.94168 1.02837 1.21764 0.89594 0.93778 0.89556 0.91965 1.23204 0.97442 0.99894 0.96528 1.22993 0.98228 0.99394 0.96258 1.20296 0.84974 0.90230 0.91723 0.97794 1.22714 1.51142 0.93603 0.99703 0.93133 1.27275 0.92773 1.03222 0.98933 1.70743 1.45671 0.99712 1.39642 0.82940 0.77013 0.71979 0.74035 1.19466 1.20217 1.21025 1.88601 1.23520 1.74643 1.44027 0.91572 0.91987 0.89865 0.84791 0.83089 0.83263 0.91481 0.88845 0.91806 0.90628 0.88655 0.90516 0.91579 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 8.70 71.23 0.62 -4.77 16 2 C -0.07 -2.68 5.68 -19.87 -0.11 -2.79 16 3 C -0.14 -4.23 9.67 22.27 0.22 -4.01 16 4 C -0.11 -2.85 10.05 22.27 0.22 -2.63 16 5 C -0.13 -3.40 9.70 22.27 0.22 -3.18 16 6 C -0.09 -2.70 5.88 -19.87 -0.12 -2.82 16 7 C -0.12 -2.94 9.26 71.23 0.66 -2.28 16 8 C -0.11 -3.91 5.06 -19.87 -0.10 -4.01 16 9 C 0.11 4.54 3.04 30.51 0.09 4.63 16 10 H 0.06 2.57 5.93 -2.38 -0.01 2.56 16 11 C -0.13 -4.71 6.26 32.05 0.20 -4.51 16 12 C -0.13 -5.36 6.53 31.86 0.21 -5.15 16 13 C 0.18 9.51 2.41 30.32 0.07 9.58 16 14 H 0.00 0.25 7.61 -2.39 -0.02 0.23 16 15 C -0.63 -36.63 8.75 25.60 0.22 -36.40 16 16 H 0.05 2.85 7.52 -2.91 -0.02 2.83 16 17 C -0.02 -1.21 5.41 84.65 0.46 -0.76 16 18 N -0.92 -58.50 13.55 21.45 0.29 -58.20 16 19 Si 1.12 51.69 29.90 68.60 2.05 53.74 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 O -0.39 -20.03 6.67 -148.98 -0.99 -21.02 16 24 H 0.07 2.30 7.03 -2.39 -0.02 2.28 16 25 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 26 H 0.08 3.90 3.90 -2.50 -0.01 3.89 16 27 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 32 H 0.06 1.68 6.36 -2.38 -0.02 1.66 16 33 H 0.08 2.58 6.17 -2.39 -0.01 2.57 16 34 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.07 2.70 7.66 -2.39 -0.02 2.68 16 37 H 0.27 17.23 6.54 -92.71 -0.61 16.62 16 Total: -1.00 -69.31 291.28 5.43 -63.89 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.22 Total: 20.71 kcal Atomic # 6 Polarization: -61.97 SS G_CDS: 2.86 Total: -59.11 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.29 Total: -58.20 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.99 Total: -21.02 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -69.31 5.43 -63.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.510 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds