Wall clock time and date at job start Mon Mar 30 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38229 * 120.00380 * 2 1 4 4 C 1.38231 * 120.00378 * 180.27224 * 3 2 1 5 5 C 1.38235 * 119.99567 * 359.74409 * 4 3 2 6 6 C 1.38234 * 120.00180 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99989 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99848 * 359.97438 * 6 5 4 9 9 C 1.50702 * 119.99662 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.33745 * 13.59697 * 9 8 6 11 11 C 1.54480 * 110.46795 * 251.27875 * 9 8 6 12 12 C 1.54509 * 104.06517 * 217.14691 * 11 9 8 13 13 C 1.54476 * 104.06168 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.46618 * 265.10106 * 13 12 11 15 15 C 1.50696 * 110.37122 * 142.81292 * 13 12 11 16 16 H 1.08005 * 120.00227 * 3.16479 * 15 13 12 17 17 C 1.37882 * 120.00235 * 183.16435 * 15 13 12 18 18 N 1.31508 * 119.99613 * 359.72730 * 17 15 13 19 19 Si 1.86795 * 119.99936 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47255 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46970 * 120.00246 * 19 17 15 22 22 H 1.48507 * 109.47121 * 239.99877 * 19 17 15 23 23 O 1.44426 * 104.80601 * 23.98009 * 13 12 11 24 24 H 1.08997 * 109.46810 * 270.23396 * 1 2 3 25 25 H 1.09000 * 109.46657 * 30.23704 * 1 2 3 26 26 H 1.08997 * 109.46727 * 150.23290 * 1 2 3 27 27 H 1.08004 * 119.99761 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.00406 * 179.72525 * 4 3 2 29 29 H 1.08004 * 119.99983 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47307 * 264.12807 * 7 6 5 31 31 H 1.09009 * 109.47352 * 24.12748 * 7 6 5 32 32 H 1.08993 * 109.47180 * 144.12522 * 7 6 5 33 33 H 1.09000 * 110.50798 * 335.79368 * 11 9 8 34 34 H 1.09000 * 110.51013 * 98.36076 * 11 9 8 35 35 H 1.09005 * 110.50709 * 241.35672 * 12 11 9 36 36 H 1.08995 * 110.51192 * 118.64705 * 12 11 9 37 37 H 0.96999 * 119.99842 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0057 5 6 4.2717 -0.0001 -0.0060 6 6 3.5805 -1.1972 -0.0012 7 6 4.3340 -2.5024 -0.0022 8 6 2.1982 -1.1972 0.0045 9 6 1.4447 -2.5023 0.0091 10 1 2.1166 -3.3267 0.2476 11 6 0.7667 -2.7395 -1.3585 12 6 -0.5811 -3.4040 -0.9992 13 6 -0.5577 -3.4903 0.5430 14 1 -0.1939 -4.4662 0.8646 15 6 -1.9326 -3.2333 1.1037 16 1 -2.7674 -3.0768 0.4365 17 6 -2.1250 -3.1978 2.4686 18 7 -1.1096 -3.3937 3.2810 19 14 -3.8292 -2.8785 3.1635 20 1 -4.7928 -2.6978 2.0481 21 1 -4.2484 -4.0339 3.9970 22 1 -3.8014 -1.6504 3.9981 23 8 0.3564 -2.4516 0.9569 24 1 -0.3633 0.0042 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6583 2.1324 -0.0004 28 1 4.1207 2.1324 -0.0102 29 1 5.3517 -0.0002 -0.0109 30 1 4.4204 -2.8713 -1.0242 31 1 5.3297 -2.3475 0.4136 32 1 3.7970 -3.2323 0.6034 33 1 0.6007 -1.7923 -1.8718 34 1 1.3713 -3.4055 -1.9741 35 1 -0.6440 -4.4006 -1.4363 36 1 -1.4134 -2.7855 -1.3349 37 1 -1.2450 -3.3691 4.2412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309372429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:31 Heat of formation + Delta-G solvation = -32.595819 kcal Electronic energy + Delta-G solvation = -18356.598732 eV Core-core repulsion = 15677.212652 eV Total energy + Delta-G solvation = -2679.386080 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73041 -37.56498 -33.17319 -32.86316 -31.71068 -30.77440 -28.36304 -26.70998 -26.24332 -24.39339 -21.94303 -20.38548 -20.16372 -19.62695 -16.83025 -15.85680 -15.70503 -14.75462 -14.59077 -14.19439 -13.61266 -13.46328 -13.35274 -12.89518 -12.52356 -12.44103 -12.28700 -12.10506 -11.71459 -11.24828 -11.14706 -11.02468 -10.94121 -10.68005 -10.57812 -10.37659 -10.19312 -9.99367 -9.51407 -9.11773 -8.59696 -8.19087 -8.10313 -7.94806 -6.01036 -4.13314 1.73810 1.80209 3.29736 3.38025 3.41097 4.10606 4.42108 4.98089 5.15979 5.21814 5.33137 5.39967 5.54820 5.58684 5.62529 5.73681 5.78912 5.88162 5.94642 6.03324 6.17748 6.29193 6.30795 6.40416 6.49897 6.54908 6.58454 6.67227 6.76552 6.80892 6.84965 6.96122 7.10454 7.28432 7.47557 7.51373 7.88725 8.22409 8.53347 8.97889 9.56950 11.06600 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.007167 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.587280 B = 3905.804659 C = 4177.431395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.137 4.137 4 C -0.122 4.122 5 C -0.137 4.137 6 C -0.079 4.079 7 C -0.117 4.117 8 C -0.069 4.069 9 C 0.098 3.902 10 H 0.061 0.939 11 C -0.146 4.146 12 C -0.147 4.147 13 C 0.204 3.796 14 H 0.024 0.976 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.861 5.861 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.335 6.335 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 4.736 -7.553 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.047 4.047 3 C -0.155 4.155 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.080 4.080 7 C -0.173 4.173 8 C -0.069 4.069 9 C 0.039 3.961 10 H 0.079 0.921 11 C -0.183 4.183 12 C -0.185 4.185 13 C 0.149 3.851 14 H 0.041 0.959 15 C -0.565 4.565 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.497 5.497 19 Si 0.716 3.284 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.255 6.255 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.262 4.854 -7.184 11.976 hybrid contribution -0.718 0.165 0.352 0.817 sum 7.544 5.019 -6.832 11.348 Atomic orbital electron populations 1.20954 0.90161 1.02012 1.03795 1.19886 0.96930 0.91943 0.95957 1.20990 0.94111 0.97441 1.02966 1.20973 0.94304 0.97475 1.01253 1.20832 0.99021 0.92047 1.03613 1.19690 0.93084 0.95268 0.99914 1.20844 0.99396 0.94959 1.02103 1.19617 0.92397 0.94834 1.00029 1.21687 0.91550 0.92586 0.90275 0.92132 1.22989 0.97495 1.00480 0.97385 1.23073 0.95658 0.99206 1.00551 1.20511 0.89641 0.88166 0.86792 0.95864 1.21036 0.91983 1.51838 0.91663 0.91785 1.25066 0.96535 0.93936 0.97290 1.70044 1.29983 1.46662 1.03041 0.86601 0.84639 0.77935 0.79189 1.19616 1.20950 1.20879 1.89586 1.30632 1.56589 1.48648 0.90039 0.93800 0.89371 0.86627 0.86792 0.86743 0.91494 0.92025 0.90768 0.91627 0.92349 0.92722 0.91667 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 8.31 36.01 0.30 -1.88 16 2 C -0.05 -0.88 5.62 -104.62 -0.59 -1.47 16 3 C -0.14 -2.21 9.70 -39.59 -0.38 -2.59 16 4 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 5 C -0.14 -2.02 9.68 -39.58 -0.38 -2.41 16 6 C -0.08 -1.31 5.88 -104.63 -0.62 -1.93 16 7 C -0.12 -1.61 9.38 36.01 0.34 -1.27 16 8 C -0.07 -1.30 5.00 -104.63 -0.52 -1.83 16 9 C 0.10 2.00 3.07 -27.11 -0.08 1.92 16 10 H 0.06 1.21 5.67 -51.93 -0.29 0.92 16 11 C -0.15 -2.67 5.74 -25.16 -0.14 -2.81 16 12 C -0.15 -3.01 5.98 -25.16 -0.15 -3.16 16 13 C 0.20 5.17 3.08 -27.11 -0.08 5.09 16 14 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 15 C -0.53 -14.50 8.78 -34.44 -0.30 -14.80 16 16 H 0.06 1.71 7.59 -52.48 -0.40 1.31 16 17 C 0.08 2.18 5.42 -17.82 -0.10 2.08 16 18 N -0.86 -25.44 12.94 55.43 0.72 -24.72 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 O -0.34 -8.49 8.16 -35.23 -0.29 -8.78 16 24 H 0.08 1.78 8.04 -51.93 -0.42 1.36 16 25 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.09 1.81 3.90 -51.93 -0.20 1.61 16 27 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.72 8.05 -51.92 -0.42 0.30 16 32 H 0.07 1.11 6.24 -51.93 -0.32 0.78 16 33 H 0.07 1.16 6.57 -51.93 -0.34 0.82 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.33 7.64 -51.93 -0.40 0.94 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -30.05 294.47 -8.57 -38.62 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.31 Total: 1.44 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.11 Total: -27.23 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.72 Total: -24.72 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.29 Total: -8.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.05 -8.57 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.028 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds