Wall clock time and date at job start Mon Mar 30 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38229 * 120.00380 * 2 1 4 4 C 1.38231 * 120.00378 * 180.27224 * 3 2 1 5 5 C 1.38235 * 119.99567 * 359.74409 * 4 3 2 6 6 C 1.38234 * 120.00180 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99989 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99848 * 359.97438 * 6 5 4 9 9 C 1.50702 * 119.99662 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.33745 * 13.59697 * 9 8 6 11 11 C 1.54480 * 110.46795 * 251.27875 * 9 8 6 12 12 C 1.54509 * 104.06517 * 217.14691 * 11 9 8 13 13 C 1.54476 * 104.06168 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.46618 * 265.10106 * 13 12 11 15 15 C 1.50696 * 110.37122 * 142.81292 * 13 12 11 16 16 H 1.08005 * 120.00227 * 3.16479 * 15 13 12 17 17 C 1.37882 * 120.00235 * 183.16435 * 15 13 12 18 18 N 1.31508 * 119.99613 * 359.72730 * 17 15 13 19 19 Si 1.86795 * 119.99936 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47255 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46970 * 120.00246 * 19 17 15 22 22 H 1.48507 * 109.47121 * 239.99877 * 19 17 15 23 23 O 1.44426 * 104.80601 * 23.98009 * 13 12 11 24 24 H 1.08997 * 109.46810 * 270.23396 * 1 2 3 25 25 H 1.09000 * 109.46657 * 30.23704 * 1 2 3 26 26 H 1.08997 * 109.46727 * 150.23290 * 1 2 3 27 27 H 1.08004 * 119.99761 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.00406 * 179.72525 * 4 3 2 29 29 H 1.08004 * 119.99983 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47307 * 264.12807 * 7 6 5 31 31 H 1.09009 * 109.47352 * 24.12748 * 7 6 5 32 32 H 1.08993 * 109.47180 * 144.12522 * 7 6 5 33 33 H 1.09000 * 110.50798 * 335.79368 * 11 9 8 34 34 H 1.09000 * 110.51013 * 98.36076 * 11 9 8 35 35 H 1.09005 * 110.50709 * 241.35672 * 12 11 9 36 36 H 1.08995 * 110.51192 * 118.64705 * 12 11 9 37 37 H 0.96999 * 119.99842 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0057 5 6 4.2717 -0.0001 -0.0060 6 6 3.5805 -1.1972 -0.0012 7 6 4.3340 -2.5024 -0.0022 8 6 2.1982 -1.1972 0.0045 9 6 1.4447 -2.5023 0.0091 10 1 2.1166 -3.3267 0.2476 11 6 0.7667 -2.7395 -1.3585 12 6 -0.5811 -3.4040 -0.9992 13 6 -0.5577 -3.4903 0.5430 14 1 -0.1939 -4.4662 0.8646 15 6 -1.9326 -3.2333 1.1037 16 1 -2.7674 -3.0768 0.4365 17 6 -2.1250 -3.1978 2.4686 18 7 -1.1096 -3.3937 3.2810 19 14 -3.8292 -2.8785 3.1635 20 1 -4.7928 -2.6978 2.0481 21 1 -4.2484 -4.0339 3.9970 22 1 -3.8014 -1.6504 3.9981 23 8 0.3564 -2.4516 0.9569 24 1 -0.3633 0.0042 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6583 2.1324 -0.0004 28 1 4.1207 2.1324 -0.0102 29 1 5.3517 -0.0002 -0.0109 30 1 4.4204 -2.8713 -1.0242 31 1 5.3297 -2.3475 0.4136 32 1 3.7970 -3.2323 0.6034 33 1 0.6007 -1.7923 -1.8718 34 1 1.3713 -3.4055 -1.9741 35 1 -0.6440 -4.4006 -1.4363 36 1 -1.4134 -2.7855 -1.3349 37 1 -1.2450 -3.3691 4.2412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309372429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:30 Heat of formation + Delta-G solvation = -48.743254 kcal Electronic energy + Delta-G solvation = -18357.298937 eV Core-core repulsion = 15677.212652 eV Total energy + Delta-G solvation = -2680.086286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14163 -39.14931 -34.82929 -34.41550 -33.25871 -32.48581 -30.01488 -28.23909 -27.47364 -26.18298 -23.54317 -22.01268 -21.48566 -21.13541 -18.79965 -17.40073 -17.09179 -16.54649 -16.24148 -15.72404 -15.07490 -14.88262 -14.84353 -14.49513 -14.01492 -13.77205 -13.70789 -13.53607 -13.40769 -12.88682 -12.69280 -12.51074 -12.42975 -12.35759 -12.17177 -11.95534 -11.82274 -11.62369 -11.15447 -11.02344 -10.70536 -9.93390 -9.41479 -9.35407 -8.14658 -6.33612 0.49070 0.54246 1.39157 1.40558 1.52615 2.40449 2.83379 3.11367 3.66440 3.93892 3.97840 4.03019 4.12662 4.19461 4.21938 4.43004 4.45667 4.63537 4.69150 4.74074 4.81282 4.86279 4.91874 4.97066 5.01177 5.02679 5.08488 5.18088 5.26828 5.33409 5.50772 5.58393 5.64054 5.74280 5.74966 5.93772 6.17668 6.22614 6.56992 6.95513 7.41090 8.93860 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.007167 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.587280 B = 3905.804659 C = 4177.431395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.134 4.134 6 C -0.090 4.090 7 C -0.115 4.115 8 C -0.098 4.098 9 C 0.092 3.908 10 H 0.058 0.942 11 C -0.132 4.132 12 C -0.138 4.138 13 C 0.198 3.802 14 H -0.012 1.012 15 C -0.543 4.543 16 H 0.066 0.934 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.957 3.043 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.283 1.283 23 O -0.365 6.365 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 6.135 -8.842 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.161 4.161 4 C -0.133 4.133 5 C -0.151 4.151 6 C -0.090 4.090 7 C -0.171 4.171 8 C -0.098 4.098 9 C 0.034 3.966 10 H 0.076 0.924 11 C -0.170 4.170 12 C -0.175 4.175 13 C 0.142 3.858 14 H 0.006 0.994 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.782 3.218 20 H -0.184 1.184 21 H -0.202 1.202 22 H -0.209 1.209 23 O -0.285 6.285 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.525 6.249 -8.493 14.210 hybrid contribution -0.996 -0.244 0.730 1.259 sum 8.529 6.006 -7.762 13.003 Atomic orbital electron populations 1.20782 0.91462 1.02382 1.01400 1.19958 0.96362 0.93159 0.98027 1.21257 0.95231 0.97138 1.02429 1.21425 0.93707 0.99082 0.99096 1.21268 1.00786 0.91269 1.01812 1.20032 0.92276 0.97261 0.99435 1.20871 0.99948 0.93308 1.02965 1.19650 0.93670 0.93980 1.02492 1.21862 0.90541 0.93960 0.90273 0.92431 1.22905 0.96190 1.01176 0.96680 1.22929 0.97087 1.00481 0.97041 1.20378 0.88879 0.86680 0.89878 0.99400 1.21429 0.93292 1.51167 0.92127 0.91588 1.25916 1.00444 0.93740 0.97750 1.70187 1.32299 1.48333 1.03153 0.85532 0.79999 0.77699 0.78560 1.18394 1.20229 1.20926 1.89509 1.32175 1.56097 1.50726 0.93855 0.91291 0.91090 0.84744 0.83126 0.83323 0.89806 0.89584 0.92799 0.90929 0.89536 0.90993 0.91825 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.10 8.31 71.24 0.59 -3.51 16 2 C -0.07 -2.78 5.62 -19.86 -0.11 -2.89 16 3 C -0.14 -4.30 9.70 22.27 0.22 -4.08 16 4 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 5 C -0.13 -3.45 9.68 22.27 0.22 -3.24 16 6 C -0.09 -2.80 5.88 -19.87 -0.12 -2.92 16 7 C -0.11 -2.94 9.38 71.24 0.67 -2.27 16 8 C -0.10 -3.69 5.00 -19.87 -0.10 -3.79 16 9 C 0.09 3.83 3.07 30.35 0.09 3.93 16 10 H 0.06 2.38 5.67 -2.39 -0.01 2.37 16 11 C -0.13 -4.76 5.74 31.61 0.18 -4.58 16 12 C -0.14 -5.69 5.98 31.61 0.19 -5.50 16 13 C 0.20 10.44 3.08 30.35 0.09 10.53 16 14 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 15 C -0.54 -30.81 8.78 25.60 0.22 -30.59 16 16 H 0.07 3.60 7.59 -2.91 -0.02 3.58 16 17 C 0.02 1.35 5.42 84.66 0.46 1.80 16 18 N -0.90 -55.49 12.94 21.45 0.28 -55.21 16 19 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 O -0.37 -19.38 8.16 -148.98 -1.22 -20.59 16 24 H 0.04 1.99 8.04 -2.39 -0.02 1.97 16 25 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 26 H 0.07 3.00 3.90 -2.39 -0.01 2.99 16 27 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.75 8.05 -2.38 -0.02 1.73 16 32 H 0.05 1.60 6.24 -2.39 -0.01 1.58 16 33 H 0.07 2.51 6.57 -2.39 -0.02 2.50 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.06 2.62 7.64 -2.39 -0.02 2.60 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -67.82 294.47 4.97 -62.86 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.05 Total: 16.08 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 2.83 Total: -49.80 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.21 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.22 Total: -20.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.82 4.97 -62.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.115 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds