Wall clock time and date at job start Mon Mar 30 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38241 * 119.99992 * 2 1 4 4 C 1.38234 * 119.99670 * 180.24936 * 3 2 1 5 5 C 1.38229 * 120.00513 * 359.76473 * 4 3 2 6 6 C 1.38233 * 120.00116 * 0.02619 * 5 4 3 7 7 C 1.50701 * 120.00562 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00495 * 179.78435 * 2 1 3 9 9 C 1.50707 * 119.99469 * 0.02562 * 8 2 1 10 10 H 1.09007 * 110.32834 * 166.30437 * 9 8 2 11 11 C 1.54483 * 110.37251 * 288.54874 * 9 8 2 12 12 C 1.54504 * 104.05967 * 142.81086 * 11 9 8 13 13 C 1.54477 * 104.18858 * 359.93298 * 12 11 9 14 14 H 1.09006 * 110.37006 * 94.91754 * 13 12 11 15 15 C 1.50696 * 110.37300 * 217.25614 * 13 12 11 16 16 H 1.07999 * 119.99871 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99977 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00083 * 180.02562 * 17 15 13 19 19 Si 1.86802 * 119.99992 * 0.02562 * 17 15 13 20 20 H 1.48505 * 109.46986 * 89.99622 * 19 17 15 21 21 H 1.48498 * 109.47175 * 209.99795 * 19 17 15 22 22 H 1.48497 * 109.46944 * 329.99789 * 19 17 15 23 23 O 1.44422 * 110.37509 * 43.93235 * 9 8 2 24 24 H 1.08994 * 109.46960 * 263.22844 * 1 2 3 25 25 H 1.08991 * 109.46936 * 23.23520 * 1 2 3 26 26 H 1.09001 * 109.46652 * 143.23359 * 1 2 3 27 27 H 1.07999 * 119.99746 * 0.03626 * 3 2 1 28 28 H 1.08005 * 119.99418 * 179.79238 * 4 3 2 29 29 H 1.08003 * 120.00304 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.46995 * 269.97727 * 7 6 5 31 31 H 1.09002 * 109.46454 * 29.97527 * 7 6 5 32 32 H 1.08996 * 109.47486 * 149.97651 * 7 6 5 33 33 H 1.09006 * 110.50944 * 24.16519 * 11 9 8 34 34 H 1.08999 * 110.62603 * 261.51849 * 11 9 8 35 35 H 1.09002 * 110.50962 * 118.64649 * 12 11 9 36 36 H 1.09004 * 110.51304 * 241.21592 * 12 11 9 37 37 H 0.96997 * 119.99934 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2717 0.0001 -0.0055 6 6 3.5807 -1.1971 -0.0011 7 6 4.3341 -2.5022 -0.0020 8 6 2.1983 -1.1971 0.0045 9 6 1.4447 -2.5022 0.0088 10 1 2.1156 -3.3276 -0.2300 11 6 0.7764 -2.7328 1.3824 12 6 -0.5747 -3.3972 1.0355 13 6 -0.5666 -3.4894 -0.5065 14 1 -0.2069 -4.4674 -0.8262 15 6 -1.9463 -3.2314 -1.0547 16 1 -2.7640 -3.0196 -0.3817 17 6 -2.1647 -3.2648 -2.4157 18 7 -3.3688 -3.0392 -2.8942 19 14 -0.7503 -3.6304 -3.5799 20 1 -0.6635 -5.0952 -3.8085 21 1 -0.9833 -2.9403 -4.8739 22 1 0.5202 -3.1465 -2.9825 23 8 0.3493 -2.4535 -0.9311 24 1 -0.3633 -0.1212 1.0204 25 1 -0.3633 0.9442 -0.4054 26 1 -0.3633 -0.8233 -0.6151 27 1 1.6582 2.1325 0.0006 28 1 4.1205 2.1325 -0.0086 29 1 5.3518 0.0000 -0.0100 30 1 4.5115 -2.8186 -1.0299 31 1 5.2886 -2.3710 0.5077 32 1 3.7472 -3.2610 0.5155 33 1 0.6152 -1.7832 1.8929 34 1 1.3824 -3.3979 1.9975 35 1 -0.6357 -4.3918 1.4773 36 1 -1.4039 -2.7774 1.3767 37 1 -3.5224 -3.0630 -3.8516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309372432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:32 Heat of formation + Delta-G solvation = -25.577937 kcal Electronic energy + Delta-G solvation = -18453.850615 eV Core-core repulsion = 15774.768853 eV Total energy + Delta-G solvation = -2679.081762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90548 -37.84486 -33.29135 -32.87715 -31.91553 -31.07753 -28.76516 -26.92574 -26.33552 -24.44967 -21.96733 -20.47320 -20.28956 -19.74659 -17.15746 -15.98368 -15.92889 -15.00227 -14.78941 -14.08697 -13.83347 -13.67559 -13.26791 -13.22091 -12.61781 -12.59770 -12.47957 -12.38199 -11.96464 -11.44400 -11.33166 -11.10929 -10.91275 -10.79618 -10.62995 -10.41817 -10.10888 -9.84389 -9.53934 -9.46255 -8.59651 -8.39162 -8.19638 -8.12321 -6.13522 -4.21752 1.61223 1.69056 3.36480 3.44294 3.67057 3.97016 4.50404 4.75885 5.04235 5.09821 5.21491 5.29615 5.41095 5.44143 5.47596 5.57407 5.70694 5.73715 5.82771 5.91500 6.03946 6.10418 6.18014 6.19904 6.34701 6.40057 6.42650 6.49251 6.59769 6.67104 6.74961 6.84625 7.04721 7.14107 7.25923 7.46290 7.62694 8.09595 8.42067 8.88432 9.49954 10.96723 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.007954 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.425881 B = 3519.447615 C = 3556.196664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.137 4.137 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.079 4.079 7 C -0.116 4.116 8 C -0.076 4.076 9 C 0.102 3.898 10 H 0.065 0.935 11 C -0.144 4.144 12 C -0.134 4.134 13 C 0.166 3.834 14 H 0.026 0.974 15 C -0.517 4.517 16 H 0.080 0.920 17 C 0.085 3.915 18 N -0.889 5.889 19 Si 0.867 3.133 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.228 1.228 23 O -0.357 6.357 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.764 3.743 6.958 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.155 4.155 4 C -0.137 4.137 5 C -0.156 4.156 6 C -0.079 4.079 7 C -0.173 4.173 8 C -0.077 4.077 9 C 0.043 3.957 10 H 0.083 0.917 11 C -0.182 4.182 12 C -0.172 4.172 13 C 0.111 3.889 14 H 0.043 0.957 15 C -0.554 4.554 16 H 0.098 0.902 17 C -0.120 4.120 18 N -0.526 5.526 19 Si 0.693 3.307 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.151 1.151 23 O -0.278 6.278 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.626 3.898 6.631 15.647 hybrid contribution 0.680 -0.116 -0.542 0.877 sum 14.306 3.782 6.089 16.001 Atomic orbital electron populations 1.21499 0.90106 1.05459 1.03370 1.19931 0.97094 0.91802 0.95528 1.21066 0.94101 0.97579 1.02754 1.21009 0.94340 0.97534 1.00865 1.20822 0.99086 0.92011 1.03653 1.19689 0.93018 0.95304 0.99931 1.20833 0.99398 0.94716 1.02349 1.19580 0.92384 0.94688 1.01012 1.21666 0.90661 0.93026 0.90310 0.91750 1.22953 0.97339 1.00899 0.96994 1.22852 0.95982 0.99722 0.98660 1.21034 0.90110 0.87709 0.90077 0.95651 1.20938 0.91139 1.50442 0.92858 0.90188 1.25047 0.95510 0.92918 0.98496 1.69915 1.21285 1.47738 1.13699 0.87015 0.85714 0.77985 0.79989 1.21061 1.21705 1.15060 1.89482 1.31272 1.57145 1.49873 0.92139 0.93167 0.84907 0.86505 0.86698 0.86667 0.91235 0.91857 0.91229 0.91350 0.92061 0.92314 0.91025 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.73 36.01 0.31 -2.47 16 2 C -0.04 -0.77 5.62 -104.62 -0.59 -1.36 16 3 C -0.14 -2.11 9.68 -39.58 -0.38 -2.49 16 4 C -0.12 -1.64 10.05 -39.59 -0.40 -2.04 16 5 C -0.14 -1.90 9.70 -39.59 -0.38 -2.28 16 6 C -0.08 -1.21 5.88 -104.62 -0.62 -1.83 16 7 C -0.12 -1.45 9.26 36.01 0.33 -1.12 16 8 C -0.08 -1.35 4.99 -104.62 -0.52 -1.88 16 9 C 0.10 1.89 2.89 -27.10 -0.08 1.81 16 10 H 0.06 1.13 5.94 -51.92 -0.31 0.83 16 11 C -0.14 -2.44 6.14 -25.16 -0.15 -2.59 16 12 C -0.13 -2.59 6.61 -25.17 -0.17 -2.76 16 13 C 0.17 3.85 2.50 -27.11 -0.07 3.78 16 14 H 0.03 0.60 7.49 -51.93 -0.39 0.21 16 15 C -0.52 -14.24 9.36 -34.44 -0.32 -14.57 16 16 H 0.08 2.36 7.81 -52.49 -0.41 1.95 16 17 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 18 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 19 Si 0.87 21.80 27.05 -169.99 -4.60 17.20 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 22 H -0.23 -5.63 5.55 56.52 0.31 -5.32 16 23 O -0.36 -8.15 5.03 -35.23 -0.18 -8.32 16 24 H 0.06 1.06 7.32 -51.93 -0.38 0.68 16 25 H 0.05 0.86 8.04 -51.93 -0.42 0.45 16 26 H 0.13 2.98 4.73 -51.94 -0.25 2.74 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.07 0.86 6.36 -51.93 -0.33 0.52 16 33 H 0.07 1.14 6.47 -51.93 -0.34 0.80 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.43 7.70 -51.93 -0.40 1.03 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -30.08 289.52 -8.16 -38.24 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.40 Total: 2.09 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -3.13 Total: -27.45 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.18 Total: -8.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.60 Total: 17.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.08 -8.16 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.662 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds