Wall clock time and date at job start Mon Mar 30 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38241 * 119.99992 * 2 1 4 4 C 1.38234 * 119.99670 * 180.24936 * 3 2 1 5 5 C 1.38229 * 120.00513 * 359.76473 * 4 3 2 6 6 C 1.38233 * 120.00116 * 0.02619 * 5 4 3 7 7 C 1.50701 * 120.00562 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00495 * 179.78435 * 2 1 3 9 9 C 1.50707 * 119.99469 * 0.02562 * 8 2 1 10 10 H 1.09007 * 110.32834 * 166.30437 * 9 8 2 11 11 C 1.54483 * 110.37251 * 288.54874 * 9 8 2 12 12 C 1.54504 * 104.05967 * 142.81086 * 11 9 8 13 13 C 1.54477 * 104.18858 * 359.93298 * 12 11 9 14 14 H 1.09006 * 110.37006 * 94.91754 * 13 12 11 15 15 C 1.50696 * 110.37300 * 217.25614 * 13 12 11 16 16 H 1.07999 * 119.99871 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99977 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00083 * 180.02562 * 17 15 13 19 19 Si 1.86802 * 119.99992 * 0.02562 * 17 15 13 20 20 H 1.48505 * 109.46986 * 89.99622 * 19 17 15 21 21 H 1.48498 * 109.47175 * 209.99795 * 19 17 15 22 22 H 1.48497 * 109.46944 * 329.99789 * 19 17 15 23 23 O 1.44422 * 110.37509 * 43.93235 * 9 8 2 24 24 H 1.08994 * 109.46960 * 263.22844 * 1 2 3 25 25 H 1.08991 * 109.46936 * 23.23520 * 1 2 3 26 26 H 1.09001 * 109.46652 * 143.23359 * 1 2 3 27 27 H 1.07999 * 119.99746 * 0.03626 * 3 2 1 28 28 H 1.08005 * 119.99418 * 179.79238 * 4 3 2 29 29 H 1.08003 * 120.00304 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.46995 * 269.97727 * 7 6 5 31 31 H 1.09002 * 109.46454 * 29.97527 * 7 6 5 32 32 H 1.08996 * 109.47486 * 149.97651 * 7 6 5 33 33 H 1.09006 * 110.50944 * 24.16519 * 11 9 8 34 34 H 1.08999 * 110.62603 * 261.51849 * 11 9 8 35 35 H 1.09002 * 110.50962 * 118.64649 * 12 11 9 36 36 H 1.09004 * 110.51304 * 241.21592 * 12 11 9 37 37 H 0.96997 * 119.99934 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2717 0.0001 -0.0055 6 6 3.5807 -1.1971 -0.0011 7 6 4.3341 -2.5022 -0.0020 8 6 2.1983 -1.1971 0.0045 9 6 1.4447 -2.5022 0.0088 10 1 2.1156 -3.3276 -0.2300 11 6 0.7764 -2.7328 1.3824 12 6 -0.5747 -3.3972 1.0355 13 6 -0.5666 -3.4894 -0.5065 14 1 -0.2069 -4.4674 -0.8262 15 6 -1.9463 -3.2314 -1.0547 16 1 -2.7640 -3.0196 -0.3817 17 6 -2.1647 -3.2648 -2.4157 18 7 -3.3688 -3.0392 -2.8942 19 14 -0.7503 -3.6304 -3.5799 20 1 -0.6635 -5.0952 -3.8085 21 1 -0.9833 -2.9403 -4.8739 22 1 0.5202 -3.1465 -2.9825 23 8 0.3493 -2.4535 -0.9311 24 1 -0.3633 -0.1212 1.0204 25 1 -0.3633 0.9442 -0.4054 26 1 -0.3633 -0.8233 -0.6151 27 1 1.6582 2.1325 0.0006 28 1 4.1205 2.1325 -0.0086 29 1 5.3518 0.0000 -0.0100 30 1 4.5115 -2.8186 -1.0299 31 1 5.2886 -2.3710 0.5077 32 1 3.7472 -3.2610 0.5155 33 1 0.6152 -1.7832 1.8929 34 1 1.3824 -3.3979 1.9975 35 1 -0.6357 -4.3918 1.4773 36 1 -1.4039 -2.7774 1.3767 37 1 -3.5224 -3.0630 -3.8516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309372432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:32 Heat of formation + Delta-G solvation = -41.893661 kcal Electronic energy + Delta-G solvation = -18454.558118 eV Core-core repulsion = 15774.768853 eV Total energy + Delta-G solvation = -2679.789265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22859 -39.29465 -34.86517 -34.42630 -33.40454 -32.65797 -30.37272 -28.32418 -27.47680 -26.12536 -23.45739 -21.99744 -21.50457 -21.19334 -19.17392 -17.43114 -17.26008 -16.62216 -16.29330 -15.63648 -15.17795 -15.02517 -14.72603 -14.65604 -14.56527 -13.76106 -13.71929 -13.60703 -13.45214 -12.92844 -12.86636 -12.60053 -12.37936 -12.26032 -11.97474 -11.95498 -11.76441 -11.60012 -11.34107 -11.18601 -10.75783 -9.99139 -9.42575 -9.35731 -8.34681 -6.45655 0.45463 0.52819 1.34465 1.39307 1.65543 2.40501 2.75090 2.99144 3.55940 3.87315 3.94405 4.02204 4.10282 4.15947 4.18465 4.38393 4.44051 4.53749 4.62922 4.72011 4.76989 4.83598 4.87174 4.90811 4.99129 5.03063 5.05034 5.19709 5.24861 5.33356 5.40744 5.53574 5.62927 5.66261 5.79526 5.93244 6.19792 6.24711 6.39855 6.69710 7.29333 8.79429 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.007954 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.425881 B = 3519.447615 C = 3556.196664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.114 4.114 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.117 4.117 8 C -0.102 4.102 9 C 0.096 3.904 10 H 0.078 0.922 11 C -0.131 4.131 12 C -0.130 4.130 13 C 0.165 3.835 14 H 0.029 0.971 15 C -0.519 4.519 16 H 0.043 0.957 17 C 0.030 3.970 18 N -0.938 5.938 19 Si 0.930 3.070 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.221 1.221 23 O -0.378 6.378 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.621 3.943 7.710 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.165 4.165 4 C -0.132 4.132 5 C -0.152 4.152 6 C -0.085 4.085 7 C -0.173 4.173 8 C -0.102 4.102 9 C 0.038 3.962 10 H 0.096 0.904 11 C -0.169 4.169 12 C -0.168 4.168 13 C 0.109 3.891 14 H 0.046 0.954 15 C -0.556 4.556 16 H 0.061 0.939 17 C -0.169 4.169 18 N -0.577 5.577 19 Si 0.754 3.246 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.143 1.143 23 O -0.299 6.299 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.496 4.092 7.404 19.434 hybrid contribution -0.486 -0.093 -0.692 0.851 sum 17.010 3.999 6.712 18.718 Atomic orbital electron populations 1.21291 0.91828 1.03978 1.02603 1.19943 0.96171 0.93200 0.97728 1.21276 0.95266 0.97214 1.02697 1.21418 0.93647 0.99185 0.98964 1.21261 1.00811 0.91306 1.01873 1.20043 0.92174 0.97296 0.99026 1.20895 1.00321 0.93226 1.02850 1.19630 0.93615 0.93856 1.03103 1.21902 0.89764 0.94503 0.89983 0.90424 1.22884 0.95932 1.01301 0.96754 1.22765 0.97090 1.00967 0.95998 1.20862 0.88025 0.87759 0.92410 0.95356 1.21190 0.92869 1.49110 0.92410 0.93850 1.25859 0.97676 0.93113 1.00298 1.70044 1.23386 1.50264 1.14041 0.86031 0.82892 0.78191 0.77464 1.19838 1.22222 1.14295 1.89409 1.32522 1.56650 1.51341 0.92125 0.92808 0.88634 0.85277 0.83429 0.83347 0.91044 0.89151 0.91255 0.91453 0.88772 0.90169 0.92749 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 8.73 71.24 0.62 -4.78 16 2 C -0.07 -2.43 5.62 -19.86 -0.11 -2.55 16 3 C -0.15 -4.21 9.68 22.27 0.22 -3.99 16 4 C -0.11 -2.70 10.05 22.27 0.22 -2.48 16 5 C -0.13 -3.12 9.70 22.27 0.22 -2.91 16 6 C -0.09 -2.32 5.88 -19.87 -0.12 -2.44 16 7 C -0.12 -2.44 9.26 71.24 0.66 -1.78 16 8 C -0.10 -3.42 4.99 -19.86 -0.10 -3.52 16 9 C 0.10 3.42 2.89 30.35 0.09 3.51 16 10 H 0.08 2.54 5.94 -2.38 -0.01 2.52 16 11 C -0.13 -4.20 6.14 31.61 0.19 -4.01 16 12 C -0.13 -4.98 6.61 31.61 0.21 -4.77 16 13 C 0.17 7.70 2.50 30.35 0.08 7.78 16 14 H 0.03 1.32 7.49 -2.38 -0.02 1.30 16 15 C -0.52 -29.72 9.36 25.60 0.24 -29.48 16 16 H 0.04 2.72 7.81 -2.91 -0.02 2.70 16 17 C 0.03 1.79 5.47 84.65 0.46 2.25 16 18 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 19 Si 0.93 46.00 27.05 68.60 1.86 47.86 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 22 H -0.22 -10.55 5.55 99.48 0.55 -10.00 16 23 O -0.38 -17.22 5.03 -148.98 -0.75 -17.97 16 24 H 0.06 2.21 7.32 -2.39 -0.02 2.19 16 25 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 26 H 0.10 4.46 4.73 -2.61 -0.01 4.45 16 27 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 32 H 0.07 1.45 6.36 -2.39 -0.02 1.43 16 33 H 0.07 2.17 6.47 -2.38 -0.02 2.15 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.05 2.23 7.70 -2.38 -0.02 2.21 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -67.53 289.52 5.18 -62.35 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.89 Total: 15.71 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 2.88 Total: -49.15 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.79 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.75 Total: -17.97 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.86 Total: 47.86 kcal Total: -67.53 5.18 -62.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.454 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds