Wall clock time and date at job start Mon Mar 30 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38244 * 120.00049 * 2 1 4 4 C 1.38231 * 119.99804 * 180.22855 * 3 2 1 5 5 C 1.38233 * 120.00368 * 359.81054 * 4 3 2 6 6 C 1.38234 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99943 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00139 * 179.80453 * 2 1 3 9 9 C 1.50697 * 119.99971 * 0.02562 * 8 2 1 10 10 H 1.09007 * 110.35253 * 193.88290 * 9 8 2 11 11 C 1.54941 * 110.31415 * 71.73232 * 9 8 2 12 12 C 1.55455 * 100.98934 * 204.68969 * 11 9 8 13 13 C 1.54385 * 102.18198 * 34.04247 * 12 11 9 14 14 H 1.08996 * 109.83104 * 98.30307 * 13 12 11 15 15 C 1.50698 * 109.82510 * 219.17726 * 13 12 11 16 16 H 1.07999 * 120.00428 * 359.81832 * 15 13 12 17 17 C 1.37882 * 120.00014 * 179.81568 * 15 13 12 18 18 N 1.31512 * 119.99711 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00075 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46654 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47298 * 60.00262 * 19 17 15 22 22 H 1.48496 * 109.47103 * 299.99635 * 19 17 15 23 23 O 1.43230 * 107.66739 * 338.73431 * 13 12 11 24 24 H 1.09001 * 109.47017 * 270.19188 * 1 2 3 25 25 H 1.08998 * 109.46731 * 30.19249 * 1 2 3 26 26 H 1.08999 * 109.46621 * 150.19649 * 1 2 3 27 27 H 1.07998 * 119.99503 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.99672 * 179.78580 * 4 3 2 29 29 H 1.08000 * 120.00095 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47346 * 264.08830 * 7 6 5 31 31 H 1.08999 * 109.47466 * 24.08397 * 7 6 5 32 32 H 1.09003 * 109.47243 * 144.08675 * 7 6 5 33 33 H 1.08997 * 111.12363 * 322.56192 * 11 9 8 34 34 H 1.08999 * 111.12208 * 86.68192 * 11 9 8 35 35 H 1.08996 * 110.83324 * 275.89105 * 12 11 9 36 36 H 1.08998 * 110.91812 * 152.22439 * 12 11 9 37 37 H 0.97001 * 119.99989 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2718 0.0001 -0.0056 6 6 3.5806 -1.1971 -0.0011 7 6 4.3341 -2.5022 -0.0026 8 6 2.1982 -1.1971 0.0041 9 6 1.4448 -2.5022 0.0080 10 1 2.1144 -3.3258 0.2561 11 6 0.7819 -2.7447 -1.3713 12 6 -0.3888 -3.6879 -0.9758 13 6 -0.7711 -3.1629 0.4248 14 1 -1.6300 -2.4962 0.3480 15 6 -1.1021 -4.3201 1.3316 16 1 -1.0513 -5.3317 0.9567 17 6 -1.4696 -4.0875 2.6400 18 7 -1.5318 -2.8557 3.0964 19 14 -1.8791 -5.5220 3.7643 20 1 -2.2407 -5.0085 5.1100 21 1 -0.6983 -6.4155 3.8769 22 1 -3.0232 -6.2821 3.2001 23 8 0.3556 -2.4463 0.9429 24 1 -0.3633 0.0034 1.0277 25 1 -0.3633 0.8883 -0.5168 26 1 -0.3632 -0.8918 -0.5108 27 1 1.6582 2.1325 0.0004 28 1 4.1206 2.1325 -0.0083 29 1 5.3517 0.0001 -0.0097 30 1 4.4198 -2.8711 -1.0246 31 1 5.3300 -2.3472 0.4124 32 1 3.7975 -3.2322 0.6035 33 1 0.4080 -1.8134 -1.7967 34 1 1.4708 -3.2382 -2.0569 35 1 -0.0518 -4.7231 -0.9234 36 1 -1.2230 -3.5849 -1.6697 37 1 -1.3195 -2.1108 2.5125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309372434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:34 Heat of formation + Delta-G solvation = -37.296571 kcal Electronic energy + Delta-G solvation = -18400.685335 eV Core-core repulsion = 15721.095415 eV Total energy + Delta-G solvation = -2679.589920 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87507 -37.77641 -33.28233 -33.04560 -31.69168 -30.99573 -28.32160 -26.61307 -26.36140 -24.12949 -21.98215 -20.64390 -20.31003 -19.86044 -17.03965 -16.37100 -15.82686 -14.95849 -14.25181 -13.96235 -13.70135 -13.64439 -13.41617 -12.92512 -12.79204 -12.61495 -12.42185 -12.08869 -11.64179 -11.40339 -11.27320 -11.20807 -10.81932 -10.73621 -10.64478 -10.45914 -10.24618 -10.02845 -9.73199 -9.02651 -8.42239 -8.27275 -8.18074 -7.78781 -6.30637 -4.08916 1.65559 1.70621 3.45319 3.47731 3.66218 4.00696 4.56467 4.88051 5.08621 5.14518 5.24255 5.31658 5.39572 5.50004 5.54176 5.60004 5.70614 5.81609 5.86689 5.90782 6.07464 6.13796 6.15913 6.27144 6.30401 6.40339 6.43669 6.47182 6.56587 6.70250 6.75918 6.82404 6.90782 7.15340 7.34985 7.43012 8.15079 8.29854 8.60918 8.93050 9.74215 11.10899 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.006921 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.735373 B = 4044.464104 C = 4124.575832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.135 4.135 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.078 4.078 7 C -0.118 4.118 8 C -0.076 4.076 9 C 0.117 3.883 10 H 0.068 0.932 11 C -0.151 4.151 12 C -0.138 4.138 13 C 0.188 3.812 14 H 0.031 0.969 15 C -0.621 4.621 16 H 0.051 0.949 17 C 0.033 3.967 18 N -0.891 5.891 19 Si 1.066 2.934 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.288 1.288 23 O -0.366 6.366 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 4.631 -8.218 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.153 4.153 4 C -0.139 4.139 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.174 4.174 8 C -0.076 4.076 9 C 0.059 3.941 10 H 0.085 0.915 11 C -0.189 4.189 12 C -0.176 4.176 13 C 0.133 3.867 14 H 0.049 0.951 15 C -0.658 4.658 16 H 0.069 0.931 17 C -0.175 4.175 18 N -0.525 5.525 19 Si 0.894 3.106 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 O -0.287 6.287 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.172 4.357 -6.487 11.307 hybrid contribution 0.609 0.321 -1.752 1.883 sum 8.781 4.678 -8.239 12.918 Atomic orbital electron populations 1.21008 0.90824 1.01893 1.03500 1.19798 0.96549 0.92098 0.96655 1.20982 0.94161 0.97363 1.02773 1.20986 0.94275 0.97546 1.01130 1.20862 0.99119 0.92024 1.03276 1.19697 0.93035 0.95335 0.99747 1.20854 0.99461 0.94911 1.02181 1.19817 0.92651 0.95099 1.00056 1.21580 0.90816 0.92377 0.89346 0.91456 1.23358 0.98281 1.00045 0.97182 1.23138 0.96501 0.99298 0.98654 1.20433 0.85195 0.91426 0.89604 0.95134 1.22225 1.51844 0.92653 0.99078 0.93105 1.25781 0.93295 1.01548 0.96888 1.70669 1.43038 0.99264 1.39567 0.83612 0.76341 0.74456 0.76180 1.20755 1.21491 1.21479 1.88722 1.22286 1.75503 1.42159 0.90170 0.93310 0.90155 0.86545 0.86663 0.86622 0.91438 0.91932 0.90693 0.91051 0.91601 0.91363 0.92171 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.30 36.01 0.30 -1.81 16 2 C -0.05 -0.92 5.68 -104.62 -0.59 -1.52 16 3 C -0.13 -2.10 9.70 -39.58 -0.38 -2.49 16 4 C -0.12 -1.72 10.05 -39.59 -0.40 -2.11 16 5 C -0.13 -1.95 9.68 -39.58 -0.38 -2.33 16 6 C -0.08 -1.27 5.88 -104.62 -0.62 -1.89 16 7 C -0.12 -1.62 9.38 36.01 0.34 -1.28 16 8 C -0.08 -1.42 5.06 -104.63 -0.53 -1.95 16 9 C 0.12 2.39 3.22 -26.86 -0.09 2.30 16 10 H 0.07 1.38 5.68 -51.92 -0.29 1.08 16 11 C -0.15 -2.72 5.93 -24.40 -0.14 -2.87 16 12 C -0.14 -2.83 6.54 -24.70 -0.16 -2.99 16 13 C 0.19 4.74 2.11 -27.16 -0.06 4.68 16 14 H 0.03 0.82 7.74 -51.93 -0.40 0.42 16 15 C -0.62 -17.57 8.75 -34.44 -0.30 -17.87 16 16 H 0.05 1.42 7.52 -52.49 -0.39 1.02 16 17 C 0.03 0.97 5.41 -17.82 -0.10 0.87 16 18 N -0.89 -27.38 13.55 55.43 0.75 -26.63 16 19 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 O -0.37 -9.15 7.39 -35.23 -0.26 -9.41 16 24 H 0.08 1.63 8.03 -51.93 -0.42 1.22 16 25 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.08 1.55 3.38 -51.93 -0.18 1.37 16 27 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.07 1.13 6.24 -51.93 -0.32 0.81 16 33 H 0.07 1.24 6.21 -51.93 -0.32 0.91 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.28 8.63 6.54 -40.82 -0.27 8.37 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -31.28 291.58 -8.48 -39.76 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.17 Total: 2.81 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -3.11 Total: -31.26 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.75 Total: -26.63 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.26 Total: -9.41 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.28 -8.48 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.461 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds