Wall clock time and date at job start Mon Mar 30 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38244 * 120.00049 * 2 1 4 4 C 1.38231 * 119.99804 * 180.22855 * 3 2 1 5 5 C 1.38233 * 120.00368 * 359.81054 * 4 3 2 6 6 C 1.38234 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99943 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00139 * 179.80453 * 2 1 3 9 9 C 1.50697 * 119.99971 * 0.02562 * 8 2 1 10 10 H 1.09007 * 110.35253 * 193.88290 * 9 8 2 11 11 C 1.54941 * 110.31415 * 71.73232 * 9 8 2 12 12 C 1.55455 * 100.98934 * 204.68969 * 11 9 8 13 13 C 1.54385 * 102.18198 * 34.04247 * 12 11 9 14 14 H 1.08996 * 109.83104 * 98.30307 * 13 12 11 15 15 C 1.50698 * 109.82510 * 219.17726 * 13 12 11 16 16 H 1.07999 * 120.00428 * 359.81832 * 15 13 12 17 17 C 1.37882 * 120.00014 * 179.81568 * 15 13 12 18 18 N 1.31512 * 119.99711 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00075 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46654 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47298 * 60.00262 * 19 17 15 22 22 H 1.48496 * 109.47103 * 299.99635 * 19 17 15 23 23 O 1.43230 * 107.66739 * 338.73431 * 13 12 11 24 24 H 1.09001 * 109.47017 * 270.19188 * 1 2 3 25 25 H 1.08998 * 109.46731 * 30.19249 * 1 2 3 26 26 H 1.08999 * 109.46621 * 150.19649 * 1 2 3 27 27 H 1.07998 * 119.99503 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.99672 * 179.78580 * 4 3 2 29 29 H 1.08000 * 120.00095 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47346 * 264.08830 * 7 6 5 31 31 H 1.08999 * 109.47466 * 24.08397 * 7 6 5 32 32 H 1.09003 * 109.47243 * 144.08675 * 7 6 5 33 33 H 1.08997 * 111.12363 * 322.56192 * 11 9 8 34 34 H 1.08999 * 111.12208 * 86.68192 * 11 9 8 35 35 H 1.08996 * 110.83324 * 275.89105 * 12 11 9 36 36 H 1.08998 * 110.91812 * 152.22439 * 12 11 9 37 37 H 0.97001 * 119.99989 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2718 0.0001 -0.0056 6 6 3.5806 -1.1971 -0.0011 7 6 4.3341 -2.5022 -0.0026 8 6 2.1982 -1.1971 0.0041 9 6 1.4448 -2.5022 0.0080 10 1 2.1144 -3.3258 0.2561 11 6 0.7819 -2.7447 -1.3713 12 6 -0.3888 -3.6879 -0.9758 13 6 -0.7711 -3.1629 0.4248 14 1 -1.6300 -2.4962 0.3480 15 6 -1.1021 -4.3201 1.3316 16 1 -1.0513 -5.3317 0.9567 17 6 -1.4696 -4.0875 2.6400 18 7 -1.5318 -2.8557 3.0964 19 14 -1.8791 -5.5220 3.7643 20 1 -2.2407 -5.0085 5.1100 21 1 -0.6983 -6.4155 3.8769 22 1 -3.0232 -6.2821 3.2001 23 8 0.3556 -2.4463 0.9429 24 1 -0.3633 0.0034 1.0277 25 1 -0.3633 0.8883 -0.5168 26 1 -0.3632 -0.8918 -0.5108 27 1 1.6582 2.1325 0.0004 28 1 4.1206 2.1325 -0.0083 29 1 5.3517 0.0001 -0.0097 30 1 4.4198 -2.8711 -1.0246 31 1 5.3300 -2.3472 0.4124 32 1 3.7975 -3.2322 0.6035 33 1 0.4080 -1.8134 -1.7967 34 1 1.4708 -3.2382 -2.0569 35 1 -0.0518 -4.7231 -0.9234 36 1 -1.2230 -3.5849 -1.6697 37 1 -1.3195 -2.1108 2.5125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309372434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:33 Heat of formation + Delta-G solvation = -54.461774 kcal Electronic energy + Delta-G solvation = -18401.429674 eV Core-core repulsion = 15721.095415 eV Total energy + Delta-G solvation = -2680.334259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29265 -39.33856 -35.02796 -34.49302 -33.25364 -32.68448 -29.90619 -28.15193 -27.55003 -26.01184 -23.57786 -22.36036 -21.56610 -21.31965 -19.10741 -17.88002 -17.19222 -16.38552 -15.68641 -15.65000 -15.45385 -15.25427 -14.93722 -14.42809 -14.20987 -13.78545 -13.72713 -13.64901 -13.37951 -12.85002 -12.67550 -12.60470 -12.49421 -12.41695 -12.18452 -11.93992 -11.88163 -11.75691 -11.38574 -10.89588 -10.59542 -9.85058 -9.45062 -9.41283 -8.59963 -6.38855 0.42977 0.47962 1.51011 1.59808 1.78648 2.57632 2.75628 3.13905 3.52065 3.75702 3.82570 3.94688 3.98585 4.12368 4.13399 4.37417 4.38175 4.48715 4.57159 4.60174 4.72553 4.76611 4.79604 4.83739 4.87302 4.93906 4.99247 5.05109 5.15697 5.27097 5.36393 5.51438 5.59240 5.67818 5.84961 6.00325 6.12327 6.17054 6.60086 6.74322 7.54790 8.80597 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.006921 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.735373 B = 4044.464104 C = 4124.575832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.132 4.132 6 C -0.089 4.089 7 C -0.116 4.116 8 C -0.105 4.105 9 C 0.109 3.891 10 H 0.061 0.939 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.185 3.815 14 H 0.002 0.998 15 C -0.636 4.636 16 H 0.051 0.949 17 C -0.021 4.021 18 N -0.921 5.921 19 Si 1.113 2.887 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.266 1.266 23 O -0.393 6.393 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 4.871 -9.338 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.158 4.158 4 C -0.132 4.132 5 C -0.150 4.150 6 C -0.089 4.089 7 C -0.172 4.172 8 C -0.105 4.105 9 C 0.052 3.948 10 H 0.079 0.921 11 C -0.172 4.172 12 C -0.170 4.170 13 C 0.130 3.870 14 H 0.019 0.981 15 C -0.674 4.674 16 H 0.069 0.931 17 C -0.222 4.222 18 N -0.557 5.557 19 Si 0.935 3.065 20 H -0.211 1.211 21 H -0.199 1.199 22 H -0.191 1.191 23 O -0.313 6.313 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.328 4.594 -7.637 13.642 hybrid contribution 0.028 0.318 -1.450 1.485 sum 10.355 4.912 -9.087 14.627 Atomic orbital electron populations 1.20865 0.91917 1.02367 1.01313 1.19897 0.96111 0.93234 0.98489 1.21261 0.95252 0.97107 1.02210 1.21443 0.93711 0.99128 0.98937 1.21289 1.00860 0.91245 1.01560 1.20028 0.92237 0.97279 0.99350 1.20878 1.00010 0.93298 1.02998 1.19802 0.93864 0.94174 1.02664 1.21764 0.89712 0.93745 0.89601 0.92087 1.23277 0.97428 0.99900 0.96560 1.23036 0.98198 0.99456 0.96300 1.20272 0.84945 0.90099 0.91727 0.98065 1.22683 1.51297 0.93629 0.99773 0.93123 1.27292 0.92769 1.03056 0.99098 1.70790 1.45535 0.99808 1.39567 0.83010 0.77389 0.71889 0.74213 1.21064 1.19924 1.19091 1.88646 1.23257 1.75343 1.44082 0.93759 0.90746 0.91722 0.84610 0.83012 0.83242 0.89776 0.89506 0.92837 0.90395 0.88578 0.91569 0.90493 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 8.30 71.24 0.59 -3.51 16 2 C -0.08 -2.78 5.68 -19.86 -0.11 -2.90 16 3 C -0.14 -4.10 9.70 22.27 0.22 -3.89 16 4 C -0.11 -2.82 10.05 22.27 0.22 -2.59 16 5 C -0.13 -3.33 9.68 22.27 0.22 -3.11 16 6 C -0.09 -2.72 5.88 -19.87 -0.12 -2.84 16 7 C -0.12 -2.94 9.38 71.24 0.67 -2.27 16 8 C -0.10 -3.88 5.06 -19.87 -0.10 -3.98 16 9 C 0.11 4.52 3.22 30.51 0.10 4.62 16 10 H 0.06 2.55 5.68 -2.38 -0.01 2.54 16 11 C -0.13 -4.76 5.93 32.10 0.19 -4.57 16 12 C -0.13 -5.45 6.54 31.91 0.21 -5.24 16 13 C 0.19 9.71 2.11 30.32 0.06 9.77 16 14 H 0.00 0.10 7.74 -2.39 -0.02 0.08 16 15 C -0.64 -37.07 8.75 25.60 0.22 -36.85 16 16 H 0.05 2.87 7.52 -2.91 -0.02 2.84 16 17 C -0.02 -1.23 5.41 84.66 0.46 -0.78 16 18 N -0.92 -59.03 13.55 21.45 0.29 -58.74 16 19 Si 1.11 51.77 29.90 68.60 2.05 53.82 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 O -0.39 -20.55 7.39 -148.98 -1.10 -21.65 16 24 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16 25 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 26 H 0.06 2.60 3.38 -2.39 -0.01 2.60 16 27 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 32 H 0.05 1.59 6.24 -2.39 -0.01 1.57 16 33 H 0.08 2.66 6.21 -2.39 -0.01 2.64 16 34 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.07 2.72 7.66 -2.39 -0.02 2.71 16 36 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.26 17.38 6.54 -92.71 -0.61 16.78 16 Total: -1.00 -70.69 291.58 5.29 -65.41 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.22 Total: 19.29 kcal Atomic # 6 Polarization: -60.96 SS G_CDS: 2.83 Total: -58.13 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.29 Total: -58.74 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.10 Total: -21.65 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.82 kcal Total: -70.69 5.29 -65.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309372434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.947 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds