Wall clock time and date at job start Mon Mar 30 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.89963 * 2 1 4 4 H 1.08001 * 120.00100 * 120.93300 * 3 2 1 5 5 C 1.37872 * 120.00145 * 300.93583 * 3 2 1 6 6 N 1.31519 * 120.00123 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 119.99965 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47347 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46800 * 120.00302 * 7 5 3 10 10 H 1.48494 * 109.47134 * 239.99677 * 7 5 3 11 11 C 1.54381 * 109.83039 * 120.93682 * 2 1 3 12 12 C 1.55312 * 102.25342 * 98.15529 * 11 2 1 13 13 C 1.54945 * 100.93998 * 34.13697 * 12 11 2 14 14 C 1.52997 * 110.31454 * 82.47058 * 13 12 11 15 15 C 1.50701 * 110.30879 * 204.54258 * 13 12 11 16 16 C 1.38243 * 119.99585 * 328.33471 * 15 13 12 17 17 C 1.38235 * 119.99590 * 179.78498 * 16 15 13 18 18 C 1.38231 * 120.00216 * 0.46615 * 17 16 15 19 19 C 1.38238 * 120.00147 * 359.76542 * 18 17 16 20 20 C 1.38232 * 119.99848 * 0.02562 * 19 18 17 21 21 O 1.43241 * 109.83225 * 239.06984 * 2 1 3 22 22 H 1.08996 * 109.47014 * 299.06754 * 1 2 3 23 23 H 1.09005 * 109.47163 * 59.06495 * 1 2 3 24 24 H 1.08996 * 109.47494 * 179.06497 * 1 2 3 25 25 H 0.97000 * 119.99938 * 179.97438 * 6 5 3 26 26 H 1.08993 * 110.84658 * 339.96358 * 11 2 1 27 27 H 1.09007 * 110.84986 * 216.34454 * 11 2 1 28 28 H 1.08993 * 111.12740 * 276.21522 * 12 11 2 29 29 H 1.08998 * 111.15946 * 152.06555 * 12 11 2 30 30 H 1.09002 * 109.47153 * 59.99723 * 14 13 12 31 31 H 1.09001 * 109.46832 * 299.99914 * 14 13 12 32 32 H 1.09004 * 109.47261 * 179.97438 * 14 13 12 33 33 H 1.07993 * 119.99761 * 359.97438 * 16 15 13 34 34 H 1.08005 * 119.99619 * 180.24958 * 17 16 15 35 35 H 1.08000 * 120.00094 * 179.78373 * 18 17 16 36 36 H 1.08000 * 119.99986 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.00451 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0429 1.4170 0.0000 4 1 2.6788 1.7611 0.8023 5 6 1.7004 2.2742 -1.0241 6 7 0.9264 1.8550 -2.0014 7 14 2.3357 4.0309 -1.0237 8 1 3.1810 4.2513 0.1771 9 1 3.1439 4.2652 -2.2473 10 1 1.1876 4.9724 -1.0011 11 6 2.0537 -0.7466 1.2457 12 6 2.3680 -2.1571 0.6766 13 6 2.8407 -1.7981 -0.7546 14 6 4.3135 -1.3838 -0.7393 15 6 2.6372 -2.9687 -1.6817 16 6 2.7377 -4.2596 -1.1973 17 6 2.5466 -5.3333 -2.0468 18 6 2.2645 -5.1163 -3.3825 19 6 2.1687 -3.8254 -3.8678 20 6 2.3555 -2.7517 -3.0176 21 8 2.0159 -0.6926 -1.1558 22 1 -0.3633 0.4993 0.8982 23 1 -0.3634 0.5283 -0.8815 24 1 -0.3634 -1.0275 -0.0168 25 1 0.6851 2.4582 -2.7217 26 1 1.2851 -0.8017 2.0165 27 1 2.9571 -0.2733 1.6303 28 1 1.4730 -2.7786 0.6504 29 1 3.1633 -2.6416 1.2430 30 1 4.9187 -2.2076 -0.3609 31 1 4.4395 -0.5141 -0.0945 32 1 4.6315 -1.1350 -1.7518 33 1 2.9626 -4.4291 -0.1548 34 1 2.6212 -6.3418 -1.6675 35 1 2.1187 -5.9552 -4.0468 36 1 1.9487 -3.6559 -4.9115 37 1 2.2811 -1.7432 -3.3968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309374790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:28 Heat of formation + Delta-G solvation = -25.281493 kcal Electronic energy + Delta-G solvation = -18506.655066 eV Core-core repulsion = 15827.586158 eV Total energy + Delta-G solvation = -2679.068907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.54686 -37.81488 -33.52990 -31.65731 -31.18708 -30.29541 -29.10389 -27.26848 -25.29035 -23.65770 -22.39606 -21.57799 -19.41286 -19.05140 -16.64230 -16.36840 -15.03580 -14.86257 -14.60281 -14.16649 -13.89137 -13.28377 -13.00083 -12.89469 -12.32743 -12.02307 -11.98525 -11.68018 -11.52411 -11.17238 -11.11344 -10.90773 -10.76839 -10.58573 -10.35605 -10.34210 -9.99399 -9.77800 -9.43770 -9.06271 -8.51790 -8.45355 -8.27991 -7.83854 -5.91630 -4.07826 1.75455 1.82368 3.30355 3.39045 3.41908 4.20407 4.44455 4.80006 5.21203 5.31696 5.33056 5.45467 5.50897 5.57096 5.70412 5.89309 6.00340 6.08191 6.19609 6.26651 6.34803 6.36901 6.48417 6.57506 6.65485 6.69649 6.73854 6.84381 6.93172 6.98059 7.07273 7.11730 7.20383 7.43006 7.48830 7.82284 8.14469 8.40873 8.68714 9.09197 9.63307 11.09827 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.007395 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.633623 B = 3785.634034 C = 4092.364621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.230 3.770 3 C -0.530 4.530 4 H 0.058 0.942 5 C 0.082 3.918 6 N -0.860 5.860 7 Si 0.885 3.115 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.284 1.284 11 C -0.141 4.141 12 C -0.144 4.144 13 C 0.137 3.863 14 C -0.146 4.146 15 C -0.061 4.061 16 C -0.119 4.119 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.127 4.127 20 C -0.089 4.089 21 O -0.338 6.338 22 H 0.034 0.966 23 H 0.090 0.910 24 H 0.011 0.989 25 H 0.258 0.742 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -10.689 0.679 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.193 3.807 3 C -0.568 4.568 4 H 0.076 0.924 5 C -0.123 4.123 6 N -0.496 5.496 7 Si 0.712 3.288 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.210 1.210 11 C -0.178 4.178 12 C -0.182 4.182 13 C 0.097 3.903 14 C -0.204 4.204 15 C -0.061 4.061 16 C -0.137 4.137 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.107 4.107 21 O -0.257 6.257 22 H 0.053 0.947 23 H 0.108 0.892 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.893 -10.566 0.305 10.959 hybrid contribution 0.356 0.893 0.134 0.971 sum 3.249 -9.673 0.440 10.213 Atomic orbital electron populations 1.21971 0.97482 0.97631 1.02568 1.19621 0.90861 0.90275 0.79976 1.21302 1.32152 0.94810 1.08530 0.92420 1.24982 0.94207 0.97932 0.95222 1.69967 1.34377 1.34858 1.10443 0.86679 0.78806 0.85285 0.77994 1.19818 1.20995 1.21033 1.23220 1.00788 0.93987 0.99830 1.23264 1.00395 0.98335 0.96185 1.20822 0.92162 0.86689 0.90673 1.22083 0.94972 1.00942 1.02388 1.20060 0.97506 0.93883 0.94622 1.20982 1.01162 0.92045 0.99536 1.20986 1.01625 0.98286 0.93918 1.21026 1.01786 0.96728 0.95606 1.21154 1.00975 0.92755 0.99597 1.21202 0.96766 0.99684 0.93046 1.88763 1.64898 1.39889 1.32190 0.94670 0.89153 0.97022 0.93221 0.92265 0.91700 0.91519 0.91827 0.93589 0.91266 0.92616 0.86432 0.86746 0.86874 0.86559 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.51 37.15 0.32 -3.10 16 2 C 0.23 5.69 0.81 -91.05 -0.07 5.61 16 3 C -0.53 -14.37 8.22 -34.44 -0.28 -14.65 16 4 H 0.06 1.55 7.52 -52.49 -0.39 1.15 16 5 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 6 N -0.86 -24.46 10.92 55.43 0.61 -23.86 16 7 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 8 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C -0.14 -2.91 5.69 -24.78 -0.14 -3.05 16 12 C -0.14 -2.64 4.74 -24.48 -0.12 -2.75 16 13 C 0.14 2.77 1.00 -90.75 -0.09 2.68 16 14 C -0.15 -2.77 8.82 37.16 0.33 -2.44 16 15 C -0.06 -1.12 4.85 -104.62 -0.51 -1.63 16 16 C -0.12 -1.88 9.01 -39.58 -0.36 -2.23 16 17 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 18 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 19 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 20 C -0.09 -1.66 9.37 -39.58 -0.37 -2.03 16 21 O -0.34 -8.44 8.70 -35.23 -0.31 -8.75 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.09 2.47 6.01 -51.93 -0.31 2.15 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.06 1.14 7.82 -51.93 -0.41 0.74 16 27 H 0.06 1.33 7.34 -51.93 -0.38 0.95 16 28 H 0.07 1.20 7.80 -51.93 -0.41 0.80 16 29 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.39 7.53 -51.93 -0.39 0.99 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.12 1.65 7.04 -52.49 -0.37 1.28 16 34 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.13 2.74 7.60 -52.49 -0.40 2.34 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -29.06 298.53 -8.37 -37.44 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.56 Total: 2.90 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -2.58 Total: -28.31 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.61 Total: -23.86 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.31 Total: -8.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.06 -8.37 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309374790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.154 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds