Wall clock time and date at job start Mon Mar 30 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.89963 * 2 1 4 4 H 1.08001 * 120.00100 * 120.93300 * 3 2 1 5 5 C 1.37872 * 120.00145 * 300.93583 * 3 2 1 6 6 N 1.31519 * 120.00123 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 119.99965 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47347 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46800 * 120.00302 * 7 5 3 10 10 H 1.48494 * 109.47134 * 239.99677 * 7 5 3 11 11 C 1.54381 * 109.83039 * 120.93682 * 2 1 3 12 12 C 1.55312 * 102.25342 * 98.15529 * 11 2 1 13 13 C 1.54945 * 100.93998 * 34.13697 * 12 11 2 14 14 C 1.52997 * 110.31454 * 82.47058 * 13 12 11 15 15 C 1.50701 * 110.30879 * 204.54258 * 13 12 11 16 16 C 1.38243 * 119.99585 * 328.33471 * 15 13 12 17 17 C 1.38235 * 119.99590 * 179.78498 * 16 15 13 18 18 C 1.38231 * 120.00216 * 0.46615 * 17 16 15 19 19 C 1.38238 * 120.00147 * 359.76542 * 18 17 16 20 20 C 1.38232 * 119.99848 * 0.02562 * 19 18 17 21 21 O 1.43241 * 109.83225 * 239.06984 * 2 1 3 22 22 H 1.08996 * 109.47014 * 299.06754 * 1 2 3 23 23 H 1.09005 * 109.47163 * 59.06495 * 1 2 3 24 24 H 1.08996 * 109.47494 * 179.06497 * 1 2 3 25 25 H 0.97000 * 119.99938 * 179.97438 * 6 5 3 26 26 H 1.08993 * 110.84658 * 339.96358 * 11 2 1 27 27 H 1.09007 * 110.84986 * 216.34454 * 11 2 1 28 28 H 1.08993 * 111.12740 * 276.21522 * 12 11 2 29 29 H 1.08998 * 111.15946 * 152.06555 * 12 11 2 30 30 H 1.09002 * 109.47153 * 59.99723 * 14 13 12 31 31 H 1.09001 * 109.46832 * 299.99914 * 14 13 12 32 32 H 1.09004 * 109.47261 * 179.97438 * 14 13 12 33 33 H 1.07993 * 119.99761 * 359.97438 * 16 15 13 34 34 H 1.08005 * 119.99619 * 180.24958 * 17 16 15 35 35 H 1.08000 * 120.00094 * 179.78373 * 18 17 16 36 36 H 1.08000 * 119.99986 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.00451 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0429 1.4170 0.0000 4 1 2.6788 1.7611 0.8023 5 6 1.7004 2.2742 -1.0241 6 7 0.9264 1.8550 -2.0014 7 14 2.3357 4.0309 -1.0237 8 1 3.1810 4.2513 0.1771 9 1 3.1439 4.2652 -2.2473 10 1 1.1876 4.9724 -1.0011 11 6 2.0537 -0.7466 1.2457 12 6 2.3680 -2.1571 0.6766 13 6 2.8407 -1.7981 -0.7546 14 6 4.3135 -1.3838 -0.7393 15 6 2.6372 -2.9687 -1.6817 16 6 2.7377 -4.2596 -1.1973 17 6 2.5466 -5.3333 -2.0468 18 6 2.2645 -5.1163 -3.3825 19 6 2.1687 -3.8254 -3.8678 20 6 2.3555 -2.7517 -3.0176 21 8 2.0159 -0.6926 -1.1558 22 1 -0.3633 0.4993 0.8982 23 1 -0.3634 0.5283 -0.8815 24 1 -0.3634 -1.0275 -0.0168 25 1 0.6851 2.4582 -2.7217 26 1 1.2851 -0.8017 2.0165 27 1 2.9571 -0.2733 1.6303 28 1 1.4730 -2.7786 0.6504 29 1 3.1633 -2.6416 1.2430 30 1 4.9187 -2.2076 -0.3609 31 1 4.4395 -0.5141 -0.0945 32 1 4.6315 -1.1350 -1.7518 33 1 2.9626 -4.4291 -0.1548 34 1 2.6212 -6.3418 -1.6675 35 1 2.1187 -5.9552 -4.0468 36 1 1.9487 -3.6559 -4.9115 37 1 2.2811 -1.7432 -3.3968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309374790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:28 Heat of formation + Delta-G solvation = -40.367444 kcal Electronic energy + Delta-G solvation = -18507.309242 eV Core-core repulsion = 15827.586158 eV Total energy + Delta-G solvation = -2679.723083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02474 -39.24705 -35.33801 -33.38895 -32.86499 -31.57549 -30.56661 -28.92049 -27.33051 -25.25362 -23.67088 -22.96317 -21.09716 -20.62482 -18.43063 -17.84583 -16.72300 -16.36109 -16.26395 -15.56666 -15.38835 -14.91249 -14.44729 -14.20854 -14.04685 -13.70647 -13.41804 -13.36021 -13.05517 -12.93527 -12.81953 -12.57515 -12.40765 -12.26933 -12.14880 -11.89902 -11.76504 -11.26468 -11.12226 -10.88146 -10.54188 -9.76289 -9.70944 -9.49120 -7.99042 -6.21660 0.54487 0.60111 1.38548 1.41247 1.51162 2.43937 2.97281 3.10409 3.50353 3.83376 4.02181 4.19378 4.21016 4.27190 4.35646 4.51382 4.65434 4.66119 4.72846 4.79035 4.86860 4.95932 4.99915 5.04352 5.11780 5.14608 5.23584 5.27061 5.28482 5.48717 5.54220 5.67504 5.69791 5.75767 5.90749 6.14649 6.22339 6.38214 6.72875 7.21883 7.54386 9.01066 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.007395 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.633623 B = 3785.634034 C = 4092.364621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.216 3.784 3 C -0.544 4.544 4 H 0.053 0.947 5 C 0.033 3.967 6 N -0.889 5.889 7 Si 0.944 3.056 8 H -0.266 1.266 9 H -0.286 1.286 10 H -0.279 1.279 11 C -0.137 4.137 12 C -0.130 4.130 13 C 0.125 3.875 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.121 4.121 21 O -0.372 6.372 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.022 0.978 25 H 0.255 0.745 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -13.313 1.665 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.178 3.822 3 C -0.582 4.582 4 H 0.071 0.929 5 C -0.169 4.169 6 N -0.527 5.527 7 Si 0.770 3.230 8 H -0.191 1.191 9 H -0.213 1.213 10 H -0.205 1.205 11 C -0.175 4.175 12 C -0.167 4.167 13 C 0.085 3.915 14 C -0.198 4.198 15 C -0.083 4.083 16 C -0.138 4.138 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.140 4.140 21 O -0.292 6.292 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.149 0.851 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.665 -13.190 1.303 13.752 hybrid contribution 0.124 1.621 -0.214 1.640 sum 3.789 -11.569 1.088 12.223 Atomic orbital electron populations 1.21860 0.98097 0.97777 1.01221 1.19677 0.90613 0.89988 0.81891 1.21666 1.31723 0.96615 1.08210 0.92873 1.25695 0.94580 1.01553 0.95086 1.70122 1.35676 1.35912 1.11012 0.85750 0.78304 0.81087 0.77869 1.19053 1.21258 1.20511 1.23120 1.00897 0.95067 0.98390 1.23214 1.01665 0.96994 0.94831 1.21114 0.91841 0.86178 0.92409 1.22022 0.95203 1.01450 1.01096 1.20018 0.99546 0.94595 0.94129 1.21221 1.00649 0.91010 1.00961 1.21463 0.99336 0.99570 0.93552 1.21455 0.99868 0.96674 0.96452 1.21354 1.00621 0.92968 1.00025 1.21045 0.99796 0.98840 0.94300 1.88701 1.65897 1.41745 1.32851 0.94063 0.92391 0.95913 0.93547 0.90968 0.91853 0.91040 0.88338 0.90190 0.93034 0.94355 0.84256 0.82842 0.83263 0.85138 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 8.51 71.98 0.61 -6.03 16 2 C 0.22 10.87 0.81 -11.07 -0.01 10.86 16 3 C -0.54 -30.20 8.22 25.60 0.21 -29.99 16 4 H 0.05 2.90 7.52 -2.91 -0.02 2.88 16 5 C 0.03 1.84 5.26 84.65 0.45 2.29 16 6 N -0.89 -52.80 10.92 21.45 0.23 -52.57 16 7 Si 0.94 44.46 29.54 68.60 2.03 46.48 16 8 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 C -0.14 -5.53 5.69 31.86 0.18 -5.35 16 12 C -0.13 -4.46 4.74 32.05 0.15 -4.30 16 13 C 0.12 5.00 1.00 -10.88 -0.01 4.99 16 14 C -0.14 -5.28 8.82 71.98 0.63 -4.65 16 15 C -0.08 -3.01 4.85 -19.86 -0.10 -3.11 16 16 C -0.12 -3.40 9.01 22.27 0.20 -3.20 16 17 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 18 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 19 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 20 C -0.12 -4.67 9.37 22.27 0.21 -4.46 16 21 O -0.37 -19.22 8.70 -148.98 -1.30 -20.52 16 22 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.06 3.29 6.01 -2.38 -0.01 3.28 16 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.07 2.68 7.82 -2.39 -0.02 2.66 16 27 H 0.06 2.54 7.34 -2.38 -0.02 2.52 16 28 H 0.07 2.39 7.80 -2.39 -0.02 2.37 16 29 H 0.10 2.68 7.92 -2.39 -0.02 2.66 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 2.08 7.53 -2.39 -0.02 2.06 16 32 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.14 3.25 7.04 -2.91 -0.02 3.23 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 Total: -1.00 -65.59 298.53 5.20 -60.39 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.03 Total: 18.40 kcal Atomic # 6 Polarization: -55.38 SS G_CDS: 3.20 Total: -52.18 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.23 Total: -52.57 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.30 Total: -20.52 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.59 5.20 -60.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309374790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.022 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds