Wall clock time and date at job start Mon Mar 30 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 110.27627 * 2 1 4 4 H 1.07997 * 119.99785 * 246.92685 * 3 2 1 5 5 C 1.37872 * 120.00097 * 66.93536 * 3 2 1 6 6 N 1.31520 * 120.00497 * 6.73054 * 5 3 2 7 7 Si 1.86808 * 119.99914 * 186.73490 * 5 3 2 8 8 H 1.48498 * 109.47339 * 84.96497 * 7 5 3 9 9 H 1.48497 * 109.46838 * 204.96494 * 7 5 3 10 10 H 1.48498 * 109.46823 * 324.95990 * 7 5 3 11 11 C 1.54942 * 110.39280 * 237.84866 * 2 1 3 12 12 C 1.55307 * 100.94244 * 204.59969 * 11 2 1 13 13 C 1.54384 * 102.25388 * 34.13607 * 12 11 2 14 14 C 1.52994 * 109.90578 * 98.19769 * 13 12 11 15 15 C 1.50703 * 109.83015 * 219.13152 * 13 12 11 16 16 C 1.38232 * 120.00056 * 329.30853 * 15 13 12 17 17 C 1.38232 * 120.00137 * 179.74263 * 16 15 13 18 18 C 1.38234 * 119.99828 * 0.53556 * 17 16 15 19 19 C 1.38234 * 119.99980 * 359.74442 * 18 17 16 20 20 C 1.38231 * 119.99682 * 149.58658 * 15 13 12 21 21 O 1.43241 * 107.58386 * 338.64135 * 13 12 11 22 22 H 1.09000 * 109.47166 * 297.66044 * 1 2 3 23 23 H 1.08999 * 109.47140 * 57.65798 * 1 2 3 24 24 H 1.09002 * 109.47579 * 177.65794 * 1 2 3 25 25 H 0.96999 * 120.00423 * 180.02562 * 6 5 3 26 26 H 1.08999 * 111.12423 * 322.51858 * 11 2 1 27 27 H 1.09000 * 111.12540 * 86.68399 * 11 2 1 28 28 H 1.08998 * 110.85155 * 275.94414 * 12 11 2 29 29 H 1.09005 * 110.84645 * 152.32292 * 12 11 2 30 30 H 1.09004 * 109.47072 * 180.23688 * 14 13 12 31 31 H 1.08995 * 109.47236 * 300.23422 * 14 13 12 32 32 H 1.08996 * 109.47222 * 60.23988 * 14 13 12 33 33 H 1.07999 * 119.99885 * 359.97438 * 16 15 13 34 34 H 1.07997 * 120.00565 * 180.29510 * 17 16 15 35 35 H 1.08001 * 120.00411 * 179.76273 * 18 17 16 36 36 H 1.07999 * 120.00248 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.00617 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 1 2.5832 1.7931 -0.8605 5 6 1.8523 2.2224 1.0986 6 7 1.3249 1.7235 2.1952 7 14 2.3306 4.0269 1.0293 8 1 1.2216 4.8102 0.4279 9 1 2.5972 4.5213 2.4039 10 1 3.5532 4.1834 0.2011 11 6 2.0699 -0.7729 -1.2296 12 6 3.4722 -1.2002 -0.7167 13 6 3.2125 -1.4395 0.7862 14 6 3.0061 -2.9327 1.0479 15 6 4.3811 -0.9358 1.5935 16 6 5.6543 -0.9599 1.0557 17 6 6.7255 -0.4930 1.7941 18 6 6.5251 -0.0121 3.0745 19 6 5.2527 0.0067 3.6145 20 6 4.1806 -0.4549 2.8738 21 8 2.0285 -0.7157 1.1414 22 1 -0.3633 0.4771 0.9102 23 1 -0.3633 0.5498 -0.8682 24 1 -0.3634 -1.0268 -0.0420 25 1 1.1839 2.2926 2.9680 26 1 1.4505 -1.6422 -1.4501 27 1 2.1516 -0.1203 -2.0989 28 1 4.1987 -0.4009 -0.8624 29 1 3.8005 -2.1181 -1.2046 30 1 2.8193 -3.0930 2.1098 31 1 2.1523 -3.2881 0.4711 32 1 3.8997 -3.4808 0.7495 33 1 5.8116 -1.3402 0.0572 34 1 7.7196 -0.5074 1.3722 35 1 7.3625 0.3492 3.6530 36 1 5.0960 0.3828 4.6147 37 1 3.1865 -0.4398 3.2955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309374793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:30 Heat of formation + Delta-G solvation = -38.493543 kcal Electronic energy + Delta-G solvation = -18873.756761 eV Core-core repulsion = 16194.114937 eV Total energy + Delta-G solvation = -2679.641825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95620 -39.08406 -35.20768 -33.38735 -32.79736 -31.46982 -30.56564 -29.15129 -27.07535 -24.99982 -23.61547 -22.83032 -21.22685 -20.55416 -18.58619 -17.79860 -16.60392 -16.21698 -16.05127 -15.49530 -15.37720 -14.74163 -14.61670 -14.10506 -13.98857 -13.71910 -13.43246 -13.31371 -12.94955 -12.89028 -12.67593 -12.53516 -12.41644 -12.25653 -12.12064 -11.96903 -11.70142 -11.30657 -11.01871 -10.80368 -10.50424 -9.67992 -9.61755 -9.40135 -7.93684 -6.11673 0.63230 0.70970 1.36917 1.39655 1.45510 2.45933 3.06412 3.22019 3.54565 3.90258 4.13050 4.20014 4.25894 4.29402 4.41551 4.57687 4.62579 4.71875 4.78299 4.88201 4.94461 4.96114 5.06788 5.08572 5.15655 5.19410 5.29396 5.32960 5.35391 5.47889 5.61996 5.71863 5.76838 5.81213 6.00308 6.04566 6.31291 6.39108 6.79947 7.23475 7.61854 9.06790 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.012391 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.675639 B = 2259.118246 C = 3158.153984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.217 3.783 3 C -0.548 4.548 4 H 0.044 0.956 5 C 0.048 3.952 6 N -0.871 5.871 7 Si 0.922 3.078 8 H -0.274 1.274 9 H -0.290 1.290 10 H -0.276 1.276 11 C -0.141 4.141 12 C -0.124 4.124 13 C 0.132 3.868 14 C -0.136 4.136 15 C -0.080 4.080 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.100 4.100 21 O -0.363 6.363 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.036 0.964 25 H 0.251 0.749 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -7.045 -2.345 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.179 3.821 3 C -0.586 4.586 4 H 0.062 0.938 5 C -0.155 4.155 6 N -0.507 5.507 7 Si 0.749 3.251 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.202 1.202 11 C -0.179 4.179 12 C -0.161 4.161 13 C 0.092 3.908 14 C -0.193 4.193 15 C -0.081 4.081 16 C -0.146 4.146 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.118 4.118 21 O -0.283 6.283 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.670 -7.007 -1.955 10.571 hybrid contribution -0.107 1.500 0.204 1.518 sum 7.563 -5.507 -1.751 9.518 Atomic orbital electron populations 1.21581 0.96960 0.98504 1.00510 1.19924 0.90864 0.89554 0.81747 1.21481 1.37889 0.98060 1.01193 0.93826 1.25417 0.94718 1.00151 0.95221 1.70194 1.43284 1.34986 1.02283 0.86157 0.78643 0.83443 0.76813 1.20013 1.21632 1.20161 1.23234 0.96321 0.99393 0.98946 1.23014 0.97562 1.01416 0.94109 1.20808 0.85334 0.91868 0.92811 1.21988 1.02359 0.93556 1.01423 1.20348 0.95138 0.98086 0.94488 1.21234 0.91877 1.01038 1.00456 1.21381 0.99494 0.99250 0.94641 1.21351 0.96779 1.00625 0.96449 1.21319 0.93484 1.00914 1.00385 1.20950 0.98169 0.97648 0.95054 1.88591 1.39474 1.63596 1.36655 0.94225 0.93192 0.94518 0.93977 0.91158 0.91503 0.92067 0.88804 0.93712 0.91882 0.90133 0.84628 0.83394 0.83901 0.86045 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.78 71.98 0.63 -4.93 16 2 C 0.22 10.54 0.74 -10.88 -0.01 10.53 16 3 C -0.55 -29.77 7.99 25.60 0.20 -29.57 16 4 H 0.04 2.39 7.71 -2.91 -0.02 2.36 16 5 C 0.05 2.69 5.26 84.65 0.45 3.13 16 6 N -0.87 -50.32 11.45 21.45 0.25 -50.07 16 7 Si 0.92 44.51 29.54 68.60 2.03 46.53 16 8 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 9 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 C -0.14 -5.56 6.03 32.05 0.19 -5.37 16 12 C -0.12 -4.46 4.82 31.86 0.15 -4.31 16 13 C 0.13 5.32 1.07 -11.07 -0.01 5.31 16 14 C -0.14 -4.52 8.71 71.98 0.63 -3.90 16 15 C -0.08 -3.25 4.81 -19.87 -0.10 -3.35 16 16 C -0.13 -4.33 8.75 22.27 0.19 -4.13 16 17 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 18 C -0.13 -4.16 10.05 22.27 0.22 -3.93 16 19 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 20 C -0.10 -4.35 9.36 22.27 0.21 -4.14 16 21 O -0.36 -18.13 8.09 -148.98 -1.21 -19.33 16 22 H 0.04 2.09 7.04 -2.39 -0.02 2.07 16 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 25 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 27 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 28 H 0.06 2.36 6.89 -2.39 -0.02 2.34 16 29 H 0.09 2.66 7.83 -2.38 -0.02 2.64 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.14 3.89 6.86 -2.91 -0.02 3.87 16 34 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.10 4.79 7.54 -2.91 -0.02 4.77 16 Total: -1.00 -63.08 299.91 5.31 -57.77 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.03 Total: 18.46 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 3.21 Total: -53.36 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.25 Total: -50.07 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.21 Total: -19.33 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.08 5.31 -57.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309374793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.275 kcal (2) G-P(sol) polarization free energy of solvation -63.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds