Wall clock time and date at job start Mon Mar 30 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.35151 * 2 1 4 4 H 1.08002 * 119.99999 * 119.31125 * 3 2 1 5 5 C 1.37875 * 120.00140 * 299.30910 * 3 2 1 6 6 N 1.31518 * 119.99618 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 120.00193 * 180.02562 * 5 3 2 8 8 H 1.48503 * 109.46871 * 89.99825 * 7 5 3 9 9 H 1.48497 * 109.46982 * 209.99919 * 7 5 3 10 10 H 1.48493 * 109.46919 * 330.00122 * 7 5 3 11 11 C 1.54945 * 110.30845 * 122.14385 * 2 1 3 12 12 C 1.55301 * 100.94080 * 155.36239 * 11 2 1 13 13 C 1.54381 * 102.25481 * 325.86233 * 12 11 2 14 14 C 1.52997 * 109.83292 * 261.84654 * 13 12 11 15 15 C 1.50693 * 109.83046 * 140.86983 * 13 12 11 16 16 C 1.38232 * 120.00210 * 30.14819 * 15 13 12 17 17 C 1.38243 * 120.00076 * 179.74538 * 16 15 13 18 18 C 1.38233 * 119.99910 * 0.52247 * 17 16 15 19 19 C 1.38238 * 119.99758 * 359.74762 * 18 17 16 20 20 C 1.38230 * 120.00595 * 359.97438 * 19 18 17 21 21 O 1.43240 * 107.58517 * 21.36000 * 13 12 11 22 22 H 1.09000 * 109.47246 * 180.69172 * 1 2 3 23 23 H 1.09002 * 109.47322 * 300.68847 * 1 2 3 24 24 H 1.08999 * 109.47507 * 60.68698 * 1 2 3 25 25 H 0.96998 * 119.99959 * 180.02562 * 6 5 3 26 26 H 1.09002 * 111.12670 * 273.27661 * 11 2 1 27 27 H 1.08995 * 111.12824 * 37.43995 * 11 2 1 28 28 H 1.09006 * 110.84678 * 207.67785 * 12 11 2 29 29 H 1.09000 * 110.85160 * 84.05588 * 12 11 2 30 30 H 1.09005 * 109.47000 * 179.58017 * 14 13 12 31 31 H 1.08993 * 109.47190 * 299.58358 * 14 13 12 32 32 H 1.09006 * 109.46973 * 59.58937 * 14 13 12 33 33 H 1.08000 * 119.99825 * 359.97438 * 16 15 13 34 34 H 1.07994 * 119.99983 * 180.29402 * 17 16 15 35 35 H 1.07999 * 119.99971 * 179.76812 * 18 17 16 36 36 H 1.08006 * 119.99627 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.00833 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0541 1.4130 0.0000 4 1 2.6712 1.7600 0.8156 5 6 1.7458 2.2626 -1.0412 6 7 0.9940 1.8401 -2.0341 7 14 2.3961 4.0138 -1.0415 8 1 3.7127 4.0527 -1.7273 9 1 1.4395 4.8968 -1.7560 10 1 2.5530 4.4838 0.3583 11 6 2.0678 -0.7731 1.2304 12 6 3.4699 -1.2025 0.7190 13 6 3.2112 -1.4420 -0.7841 14 6 3.0024 -2.9353 -1.0434 15 6 4.3812 -0.9401 -1.5904 16 6 5.6523 -0.9553 -1.0474 17 6 6.7263 -0.4998 -1.7891 18 6 6.5276 -0.0191 -3.0698 19 6 5.2557 0.0012 -3.6108 20 6 4.1825 -0.4595 -2.8714 21 8 2.0286 -0.7168 -1.1406 22 1 -0.3634 -1.0276 0.0124 23 1 -0.3634 0.5245 0.8837 24 1 -0.3634 0.5031 -0.8960 25 1 0.7774 2.4377 -2.7668 26 1 2.1496 -0.1204 2.0995 27 1 1.4471 -1.6416 1.4507 28 1 3.7966 -2.1206 1.2074 29 1 4.1974 -0.4040 0.8650 30 1 2.8129 -3.0968 -2.1046 31 1 3.8959 -3.4841 -0.7461 32 1 2.1492 -3.2888 -0.4642 33 1 5.8068 -1.3265 -0.0450 34 1 7.7200 -0.5161 -1.3665 35 1 7.3662 0.3402 -3.6478 36 1 5.1004 0.3772 -4.6113 37 1 3.1887 -0.4433 -3.2938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309374797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:31 Heat of formation + Delta-G solvation = -39.550412 kcal Electronic energy + Delta-G solvation = -18830.477548 eV Core-core repulsion = 16150.789894 eV Total energy + Delta-G solvation = -2679.687654 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99621 -39.12032 -35.28808 -33.42475 -32.81029 -31.50821 -30.56600 -29.13485 -27.14127 -25.00601 -23.64852 -22.85697 -21.25460 -20.58263 -18.61876 -17.83898 -16.65324 -16.26177 -16.06799 -15.51384 -15.41936 -14.76425 -14.65584 -14.13965 -14.01871 -13.75023 -13.44543 -13.20487 -12.97426 -12.93216 -12.74697 -12.52493 -12.42421 -12.26122 -12.08854 -12.00731 -11.74440 -11.31449 -11.06228 -10.81988 -10.52476 -9.73288 -9.65859 -9.44343 -7.97245 -6.16908 0.60286 0.66545 1.35912 1.38896 1.45466 2.43771 3.02722 3.16893 3.54526 3.87136 4.09997 4.17892 4.23413 4.27497 4.38299 4.55872 4.61518 4.70112 4.76707 4.84442 4.93306 4.96990 5.05795 5.08262 5.14994 5.18909 5.27041 5.30308 5.34410 5.49226 5.61222 5.69332 5.72261 5.77290 5.96527 6.11809 6.27679 6.38491 6.78855 7.18398 7.57881 9.02884 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.012213 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.232413 B = 2292.015930 C = 3188.930851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.218 3.782 3 C -0.542 4.542 4 H 0.045 0.955 5 C 0.044 3.956 6 N -0.884 5.884 7 Si 0.928 3.072 8 H -0.285 1.285 9 H -0.284 1.284 10 H -0.268 1.268 11 C -0.142 4.142 12 C -0.124 4.124 13 C 0.132 3.868 14 C -0.136 4.136 15 C -0.081 4.081 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.141 4.141 20 C -0.108 4.108 21 O -0.374 6.374 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.254 0.746 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.746 -7.086 2.125 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.180 3.820 3 C -0.580 4.580 4 H 0.063 0.937 5 C -0.158 4.158 6 N -0.521 5.521 7 Si 0.754 3.246 8 H -0.212 1.212 9 H -0.209 1.209 10 H -0.192 1.192 11 C -0.179 4.179 12 C -0.162 4.162 13 C 0.092 3.908 14 C -0.193 4.193 15 C -0.081 4.081 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.127 4.127 21 O -0.294 6.294 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.547 -7.031 1.762 11.207 hybrid contribution -0.078 1.405 -0.255 1.431 sum 8.469 -5.626 1.507 10.278 Atomic orbital electron populations 1.21625 0.96870 0.98300 1.01313 1.19918 0.91054 0.89408 0.81589 1.21528 1.32508 0.97452 1.06491 0.93695 1.25469 0.94572 1.00489 0.95260 1.70094 1.36707 1.35767 1.09571 0.86048 0.78097 0.82194 0.78211 1.21182 1.20918 1.19245 1.23233 0.96345 0.99399 0.98951 1.23032 0.97538 1.01589 0.94009 1.20820 0.85118 0.91937 0.92938 1.21990 1.02426 0.93452 1.01464 1.20351 0.95247 0.98086 0.94432 1.21251 0.91773 1.00978 1.00485 1.21412 0.99527 0.99023 0.94564 1.21375 0.96798 1.00486 0.96495 1.21329 0.93442 1.00728 1.00409 1.20953 0.98155 0.98302 0.95250 1.88555 1.39875 1.63749 1.37260 0.95015 0.93678 0.92614 0.93708 0.91434 0.91213 0.88639 0.91859 0.93673 0.89983 0.91907 0.84443 0.83221 0.83763 0.85843 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.73 71.98 0.63 -5.36 16 2 C 0.22 10.71 0.73 -10.87 -0.01 10.70 16 3 C -0.54 -29.63 8.03 25.60 0.21 -29.42 16 4 H 0.04 2.46 7.72 -2.91 -0.02 2.44 16 5 C 0.04 2.48 5.28 84.65 0.45 2.93 16 6 N -0.88 -51.55 11.08 21.45 0.24 -51.31 16 7 Si 0.93 44.72 29.54 68.60 2.03 46.75 16 8 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 9 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 C -0.14 -5.61 6.02 32.05 0.19 -5.42 16 12 C -0.12 -4.45 4.82 31.85 0.15 -4.30 16 13 C 0.13 5.29 1.07 -11.07 -0.01 5.28 16 14 C -0.14 -4.50 8.71 71.98 0.63 -3.87 16 15 C -0.08 -3.23 4.82 -19.87 -0.10 -3.33 16 16 C -0.13 -4.20 8.75 22.27 0.19 -4.00 16 17 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 18 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 19 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 20 C -0.11 -4.65 9.36 22.27 0.21 -4.45 16 21 O -0.37 -18.79 8.62 -148.98 -1.28 -20.08 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 3.05 6.22 -2.39 -0.01 3.03 16 25 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.07 2.62 7.98 -2.39 -0.02 2.60 16 27 H 0.07 2.47 8.06 -2.39 -0.02 2.45 16 28 H 0.10 2.67 7.82 -2.38 -0.02 2.65 16 29 H 0.06 2.39 6.86 -2.39 -0.02 2.37 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.14 3.83 6.82 -2.91 -0.02 3.81 16 34 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.09 4.58 7.54 -2.91 -0.02 4.56 16 Total: -1.00 -63.96 299.23 5.22 -58.74 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.03 Total: 19.32 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 3.21 Total: -53.42 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.24 Total: -51.31 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.28 Total: -20.08 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.96 5.22 -58.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309374797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.188 kcal (2) G-P(sol) polarization free energy of solvation -63.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds