Wall clock time and date at job start Mon Mar 30 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 110.35633 * 2 1 4 4 C 1.38228 * 120.00124 * 270.41926 * 3 2 1 5 5 C 1.38244 * 120.00010 * 179.80866 * 4 3 2 6 6 C 1.38235 * 119.99754 * 0.42242 * 5 4 3 7 7 C 1.38232 * 119.99828 * 359.80688 * 6 5 4 8 8 C 1.38230 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.54950 * 110.30706 * 237.86093 * 2 1 3 10 10 C 1.55305 * 100.93877 * 277.52765 * 9 2 1 11 11 C 1.54385 * 102.25478 * 325.86659 * 10 9 2 12 12 C 1.52997 * 109.83105 * 261.84140 * 11 10 9 13 13 C 1.50702 * 109.90475 * 140.91181 * 11 10 9 14 14 H 1.08005 * 119.99969 * 0.23439 * 13 11 10 15 15 C 1.37873 * 120.00070 * 180.23495 * 13 11 10 16 16 N 1.31520 * 119.99733 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00222 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47326 * 90.00061 * 17 15 13 19 19 H 1.48502 * 109.46803 * 209.99896 * 17 15 13 20 20 H 1.48495 * 109.46776 * 329.99531 * 17 15 13 21 21 O 1.43234 * 107.58491 * 21.35720 * 11 10 9 22 22 H 1.09004 * 109.46866 * 299.30991 * 1 2 3 23 23 H 1.09003 * 109.47040 * 59.30279 * 1 2 3 24 24 H 1.08992 * 109.47108 * 179.31177 * 1 2 3 25 25 H 1.07999 * 120.00531 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.99634 * 180.20666 * 5 4 3 27 27 H 1.07993 * 119.99777 * 179.79221 * 6 5 4 28 28 H 1.08000 * 119.99665 * 179.97438 * 7 6 5 29 29 H 1.08002 * 120.00225 * 179.97438 * 8 7 6 30 30 H 1.08996 * 111.12452 * 35.44530 * 9 2 1 31 31 H 1.08998 * 111.12788 * 159.57438 * 9 2 1 32 32 H 1.09004 * 110.85212 * 207.67761 * 10 9 2 33 33 H 1.09000 * 110.84565 * 84.05626 * 10 9 2 34 34 H 1.09002 * 109.47153 * 179.58631 * 12 11 10 35 35 H 1.09001 * 109.46832 * 59.58822 * 12 11 10 36 36 H 1.09004 * 109.47261 * 299.58803 * 12 11 10 37 37 H 0.97004 * 119.99987 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0542 1.4129 0.0000 4 6 2.2864 2.0639 -1.1970 5 6 2.7636 3.3614 -1.1970 6 6 3.0167 4.0047 0.0001 7 6 2.7889 3.3519 1.1971 8 6 2.3086 2.0557 1.1971 9 6 2.0677 -0.7731 -1.2305 10 6 1.9827 -2.2370 -0.7191 11 6 2.2972 -2.0778 0.7840 12 6 3.7699 -2.4014 1.0432 13 6 1.4213 -3.0004 1.5920 14 1 0.7106 -3.6436 1.0943 15 6 1.5272 -3.0233 2.9665 16 7 2.3923 -2.2396 3.5724 17 14 0.4420 -4.1673 3.9680 18 1 1.1271 -5.4733 4.1418 19 1 0.1824 -3.5635 5.2996 20 1 -0.8461 -4.3744 3.2588 21 8 2.0286 -0.7168 1.1405 22 1 -0.3633 0.5031 0.8961 23 1 -0.3633 0.5246 -0.8837 24 1 -0.3633 -1.0275 -0.0123 25 1 2.0926 1.5600 -2.1324 26 1 2.9418 3.8712 -2.1323 27 1 3.3926 5.0171 0.0001 28 1 2.9871 3.8543 2.1324 29 1 2.1310 1.5455 2.1323 30 1 1.4272 -0.6227 -2.0995 31 1 3.0976 -0.4927 -1.4513 32 1 2.7297 -2.8627 -1.2075 33 1 0.9810 -2.6413 -0.8651 34 1 3.9872 -2.2801 2.1045 35 1 4.3980 -1.7246 0.4641 36 1 3.9737 -3.4302 0.7459 37 1 2.4671 -2.2559 4.5395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309374800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:33 Heat of formation + Delta-G solvation = -25.315089 kcal Electronic energy + Delta-G solvation = -18509.094160 eV Core-core repulsion = 15830.023796 eV Total energy + Delta-G solvation = -2679.070364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54551 -37.81339 -33.52713 -31.65363 -31.18642 -30.29077 -29.10737 -27.26786 -25.28323 -23.65625 -22.39167 -21.58079 -19.41048 -19.05052 -16.63961 -16.36557 -15.03369 -14.86517 -14.59940 -14.16038 -13.88979 -13.28344 -12.99573 -12.89943 -12.31832 -12.02105 -11.98297 -11.68476 -11.52279 -11.17324 -11.10756 -10.88873 -10.76719 -10.60428 -10.35734 -10.34331 -10.00043 -9.77404 -9.44470 -9.06126 -8.51536 -8.44755 -8.27740 -7.83896 -5.91392 -4.07520 1.75661 1.82624 3.31230 3.38750 3.41279 4.20671 4.44618 4.80373 5.21364 5.31899 5.33222 5.45664 5.51184 5.57073 5.70528 5.89539 6.00630 6.07760 6.19751 6.26788 6.35051 6.37559 6.48832 6.57443 6.65698 6.69431 6.73574 6.84513 6.93626 6.98031 7.07448 7.11935 7.20452 7.43349 7.48928 7.82321 8.14134 8.40934 8.68704 9.09287 9.63493 11.10141 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.007402 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.032788 B = 3781.913517 C = 4088.943558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 C -0.061 4.061 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.133 4.133 7 C -0.127 4.127 8 C -0.089 4.089 9 C -0.144 4.144 10 C -0.141 4.141 11 C 0.230 3.770 12 C -0.139 4.139 13 C -0.531 4.531 14 H 0.057 0.943 15 C 0.082 3.918 16 N -0.860 5.860 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.338 6.338 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.011 0.989 36 H 0.034 0.966 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 7.966 -7.746 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.096 3.904 3 C -0.061 4.061 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.182 4.182 10 C -0.178 4.178 11 C 0.193 3.807 12 C -0.196 4.196 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.123 4.123 16 N -0.496 5.496 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 O -0.257 6.257 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.030 0.970 36 H 0.053 0.947 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.101 8.095 -7.356 10.938 hybrid contribution -0.588 -0.678 0.391 0.979 sum -0.487 7.417 -6.965 10.187 Atomic orbital electron populations 1.22073 0.95148 1.02529 1.00589 1.20824 0.92881 0.88260 0.88385 1.20056 0.97404 0.95607 0.93033 1.20977 1.00357 0.94846 0.97539 1.20988 1.01068 0.95146 0.97636 1.21024 1.01676 0.99600 0.92841 1.21155 1.00330 0.95299 0.97714 1.21210 0.96693 0.93702 0.99061 1.23261 1.00551 0.97021 0.97329 1.23220 1.01143 0.94580 0.98888 1.19612 0.92791 0.80196 0.88101 1.21973 0.96266 0.97193 1.04197 1.21260 1.22034 1.21930 0.91655 0.92486 1.24978 0.94747 0.94682 0.97911 1.69960 1.34031 1.36792 1.08858 0.86733 0.81226 0.80997 0.79767 1.20703 1.21212 1.19950 1.88759 1.83947 1.23450 1.29565 0.92526 0.93600 0.91376 0.86449 0.86750 0.86880 0.86562 0.84875 0.91831 0.91521 0.92261 0.91701 0.89196 0.97039 0.94659 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.84 37.16 0.33 -2.43 16 2 C 0.14 2.77 1.00 -90.74 -0.09 2.68 16 3 C -0.06 -1.13 4.85 -104.63 -0.51 -1.64 16 4 C -0.12 -1.88 9.02 -39.58 -0.36 -2.23 16 5 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 6 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 7 C -0.13 -1.99 10.05 -39.59 -0.40 -2.38 16 8 C -0.09 -1.66 9.37 -39.59 -0.37 -2.03 16 9 C -0.14 -2.63 4.76 -24.48 -0.12 -2.75 16 10 C -0.14 -2.91 5.69 -24.78 -0.14 -3.05 16 11 C 0.23 5.70 0.82 -91.05 -0.07 5.62 16 12 C -0.14 -3.41 8.50 37.16 0.32 -3.10 16 13 C -0.53 -14.39 8.22 -34.44 -0.28 -14.68 16 14 H 0.06 1.53 7.53 -52.48 -0.39 1.13 16 15 C 0.08 2.25 5.26 -17.82 -0.09 2.15 16 16 N -0.86 -24.46 10.92 55.43 0.61 -23.86 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 O -0.34 -8.43 8.63 -35.23 -0.30 -8.74 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.36 7.45 -51.93 -0.39 0.97 16 25 H 0.12 1.64 7.07 -52.49 -0.37 1.27 16 26 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 27 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.13 2.77 7.56 -52.49 -0.40 2.37 16 30 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 31 H 0.07 1.20 7.82 -51.93 -0.41 0.80 16 32 H 0.06 1.14 7.82 -51.93 -0.41 0.74 16 33 H 0.06 1.33 7.29 -51.93 -0.38 0.95 16 34 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -29.02 298.42 -8.37 -37.39 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.56 Total: 2.93 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -2.58 Total: -28.32 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.61 Total: -23.86 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.30 Total: -8.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.02 -8.37 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309374800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.074 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds