Wall clock time and date at job start Mon Mar 30 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 110.35633 * 2 1 4 4 C 1.38228 * 120.00124 * 270.41926 * 3 2 1 5 5 C 1.38244 * 120.00010 * 179.80866 * 4 3 2 6 6 C 1.38235 * 119.99754 * 0.42242 * 5 4 3 7 7 C 1.38232 * 119.99828 * 359.80688 * 6 5 4 8 8 C 1.38230 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.54950 * 110.30706 * 237.86093 * 2 1 3 10 10 C 1.55305 * 100.93877 * 277.52765 * 9 2 1 11 11 C 1.54385 * 102.25478 * 325.86659 * 10 9 2 12 12 C 1.52997 * 109.83105 * 261.84140 * 11 10 9 13 13 C 1.50702 * 109.90475 * 140.91181 * 11 10 9 14 14 H 1.08005 * 119.99969 * 0.23439 * 13 11 10 15 15 C 1.37873 * 120.00070 * 180.23495 * 13 11 10 16 16 N 1.31520 * 119.99733 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00222 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47326 * 90.00061 * 17 15 13 19 19 H 1.48502 * 109.46803 * 209.99896 * 17 15 13 20 20 H 1.48495 * 109.46776 * 329.99531 * 17 15 13 21 21 O 1.43234 * 107.58491 * 21.35720 * 11 10 9 22 22 H 1.09004 * 109.46866 * 299.30991 * 1 2 3 23 23 H 1.09003 * 109.47040 * 59.30279 * 1 2 3 24 24 H 1.08992 * 109.47108 * 179.31177 * 1 2 3 25 25 H 1.07999 * 120.00531 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.99634 * 180.20666 * 5 4 3 27 27 H 1.07993 * 119.99777 * 179.79221 * 6 5 4 28 28 H 1.08000 * 119.99665 * 179.97438 * 7 6 5 29 29 H 1.08002 * 120.00225 * 179.97438 * 8 7 6 30 30 H 1.08996 * 111.12452 * 35.44530 * 9 2 1 31 31 H 1.08998 * 111.12788 * 159.57438 * 9 2 1 32 32 H 1.09004 * 110.85212 * 207.67761 * 10 9 2 33 33 H 1.09000 * 110.84565 * 84.05626 * 10 9 2 34 34 H 1.09002 * 109.47153 * 179.58631 * 12 11 10 35 35 H 1.09001 * 109.46832 * 59.58822 * 12 11 10 36 36 H 1.09004 * 109.47261 * 299.58803 * 12 11 10 37 37 H 0.97004 * 119.99987 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0542 1.4129 0.0000 4 6 2.2864 2.0639 -1.1970 5 6 2.7636 3.3614 -1.1970 6 6 3.0167 4.0047 0.0001 7 6 2.7889 3.3519 1.1971 8 6 2.3086 2.0557 1.1971 9 6 2.0677 -0.7731 -1.2305 10 6 1.9827 -2.2370 -0.7191 11 6 2.2972 -2.0778 0.7840 12 6 3.7699 -2.4014 1.0432 13 6 1.4213 -3.0004 1.5920 14 1 0.7106 -3.6436 1.0943 15 6 1.5272 -3.0233 2.9665 16 7 2.3923 -2.2396 3.5724 17 14 0.4420 -4.1673 3.9680 18 1 1.1271 -5.4733 4.1418 19 1 0.1824 -3.5635 5.2996 20 1 -0.8461 -4.3744 3.2588 21 8 2.0286 -0.7168 1.1405 22 1 -0.3633 0.5031 0.8961 23 1 -0.3633 0.5246 -0.8837 24 1 -0.3633 -1.0275 -0.0123 25 1 2.0926 1.5600 -2.1324 26 1 2.9418 3.8712 -2.1323 27 1 3.3926 5.0171 0.0001 28 1 2.9871 3.8543 2.1324 29 1 2.1310 1.5455 2.1323 30 1 1.4272 -0.6227 -2.0995 31 1 3.0976 -0.4927 -1.4513 32 1 2.7297 -2.8627 -1.2075 33 1 0.9810 -2.6413 -0.8651 34 1 3.9872 -2.2801 2.1045 35 1 4.3980 -1.7246 0.4641 36 1 3.9737 -3.4302 0.7459 37 1 2.4671 -2.2559 4.5395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309374800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:33 Heat of formation + Delta-G solvation = -40.356515 kcal Electronic energy + Delta-G solvation = -18509.746405 eV Core-core repulsion = 15830.023796 eV Total energy + Delta-G solvation = -2679.722609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02441 -39.24571 -35.33590 -33.38567 -32.86582 -31.57049 -30.57099 -28.92140 -27.32352 -25.25267 -23.66726 -22.96656 -21.09581 -20.62388 -18.42812 -17.84329 -16.72119 -16.36410 -16.26207 -15.56115 -15.38709 -14.90662 -14.45654 -14.20494 -14.04443 -13.70392 -13.41778 -13.35895 -13.05381 -12.93064 -12.78468 -12.59548 -12.41415 -12.28560 -12.14909 -11.90945 -11.76043 -11.26070 -11.13091 -10.88046 -10.53194 -9.76255 -9.70769 -9.49022 -7.98837 -6.21421 0.54620 0.60264 1.39691 1.41271 1.50104 2.44106 2.97592 3.10538 3.50445 3.83383 4.02196 4.19235 4.21315 4.27300 4.35757 4.51346 4.65394 4.65894 4.72840 4.79258 4.87072 4.95911 4.99807 5.04536 5.11465 5.14550 5.23723 5.27079 5.28490 5.48781 5.54118 5.67579 5.69784 5.75916 5.91017 6.14402 6.22483 6.38202 6.72780 7.22033 7.54576 9.01179 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.007402 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.032788 B = 3781.913517 C = 4088.943558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.125 3.875 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.132 4.132 8 C -0.121 4.121 9 C -0.129 4.129 10 C -0.137 4.137 11 C 0.216 3.784 12 C -0.131 4.131 13 C -0.546 4.546 14 H 0.053 0.947 15 C 0.033 3.967 16 N -0.889 5.889 17 Si 0.944 3.056 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.270 1.270 21 O -0.371 6.371 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.140 0.860 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.040 0.960 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 9.399 -10.279 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.085 3.915 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.150 4.150 8 C -0.140 4.140 9 C -0.167 4.167 10 C -0.175 4.175 11 C 0.179 3.821 12 C -0.189 4.189 13 C -0.584 4.584 14 H 0.071 0.929 15 C -0.169 4.169 16 N -0.527 5.527 17 Si 0.770 3.230 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.195 1.195 21 O -0.292 6.292 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.157 0.843 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.036 9.522 -9.900 13.737 hybrid contribution -0.551 -1.032 1.153 1.642 sum -0.515 8.490 -8.748 12.201 Atomic orbital electron populations 1.22012 0.94802 1.01631 1.01276 1.21116 0.93342 0.89291 0.87797 1.20014 0.99186 0.94951 0.94146 1.21216 0.99924 0.95710 0.96978 1.21465 0.98879 0.94338 0.99243 1.21453 1.00101 1.00966 0.91921 1.21351 0.99841 0.94157 0.99636 1.21048 0.99651 0.95401 0.97860 1.23210 1.01496 0.94480 0.97499 1.23120 1.01362 0.96690 0.96310 1.19670 0.91969 0.80113 0.90391 1.21861 0.97105 0.97769 1.02186 1.21636 1.22078 1.22348 0.92291 0.92892 1.25692 0.95984 0.96118 0.99089 1.70119 1.35527 1.38338 1.08703 0.85805 0.79746 0.79365 0.78110 1.19894 1.21388 1.19479 1.88699 1.84400 1.23600 1.32451 0.94407 0.90213 0.93004 0.84260 0.82838 0.83268 0.85159 0.88984 0.88344 0.91051 0.90961 0.91848 0.92431 0.95913 0.94084 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.84 71.98 0.64 -4.63 16 2 C 0.12 5.00 1.00 -10.87 -0.01 4.99 16 3 C -0.08 -3.01 4.85 -19.87 -0.10 -3.11 16 4 C -0.12 -3.40 9.02 22.27 0.20 -3.19 16 5 C -0.12 -2.85 10.05 22.27 0.22 -2.62 16 6 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 7 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 8 C -0.12 -4.67 9.37 22.27 0.21 -4.46 16 9 C -0.13 -4.45 4.76 32.05 0.15 -4.30 16 10 C -0.14 -5.54 5.69 31.86 0.18 -5.36 16 11 C 0.22 10.88 0.82 -11.07 -0.01 10.87 16 12 C -0.13 -6.62 8.50 71.98 0.61 -6.01 16 13 C -0.55 -30.29 8.22 25.60 0.21 -30.08 16 14 H 0.05 2.89 7.53 -2.91 -0.02 2.86 16 15 C 0.03 1.87 5.26 84.65 0.45 2.31 16 16 N -0.89 -52.80 10.92 21.45 0.23 -52.57 16 17 Si 0.94 44.45 29.54 68.60 2.03 46.47 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 O -0.37 -19.19 8.63 -148.98 -1.29 -20.48 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.05 2.07 7.45 -2.39 -0.02 2.06 16 25 H 0.14 3.25 7.07 -2.91 -0.02 3.23 16 26 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 27 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.09 4.19 7.56 -2.91 -0.02 4.17 16 30 H 0.10 2.69 7.92 -2.39 -0.02 2.67 16 31 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 32 H 0.07 2.68 7.82 -2.39 -0.02 2.66 16 33 H 0.06 2.54 7.29 -2.39 -0.02 2.52 16 34 H 0.06 3.27 6.03 -2.39 -0.01 3.25 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -65.52 298.42 5.21 -60.31 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 1.03 Total: 18.48 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 3.20 Total: -52.22 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.23 Total: -52.57 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -1.29 Total: -20.48 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.52 5.21 -60.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309374800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.957 kcal (2) G-P(sol) polarization free energy of solvation -65.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds