Wall clock time and date at job start Mon Mar 30 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.48038 * 2 1 4 4 C 1.38235 * 119.99743 * 89.74759 * 3 2 1 5 5 C 1.38237 * 120.00004 * 179.76589 * 4 3 2 6 6 C 1.38234 * 119.99943 * 0.51248 * 5 4 3 7 7 C 1.38238 * 119.99681 * 359.74310 * 6 5 4 8 8 C 1.38229 * 120.00294 * 0.02562 * 7 6 5 9 9 C 1.53092 * 109.48026 * 120.02716 * 2 1 3 10 10 C 1.53172 * 109.16383 * 62.38770 * 9 2 1 11 11 C 1.53177 * 109.03844 * 56.98157 * 10 9 2 12 12 C 1.53089 * 109.15942 * 303.01699 * 11 10 9 13 13 H 1.09001 * 109.48460 * 297.61296 * 12 11 10 14 14 C 1.50702 * 109.47729 * 177.59080 * 12 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.72207 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 O 1.42901 * 109.41921 * 57.61114 * 12 11 10 23 23 H 1.08992 * 109.47532 * 299.97193 * 1 2 3 24 24 H 1.09007 * 109.47481 * 59.97728 * 1 2 3 25 25 H 1.09007 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99999 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.99662 * 180.22845 * 5 4 3 28 28 H 1.07996 * 120.00022 * 179.72691 * 6 5 4 29 29 H 1.07998 * 119.99844 * 179.97438 * 7 6 5 30 30 H 1.07995 * 120.00407 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.51860 * 302.47629 * 9 2 1 32 32 H 1.09005 * 109.57000 * 182.32404 * 9 2 1 33 33 H 1.09005 * 109.54081 * 297.10826 * 10 9 2 34 34 H 1.09005 * 109.61425 * 176.89200 * 10 9 2 35 35 H 1.09001 * 109.51987 * 183.11230 * 11 10 9 36 36 H 1.08997 * 109.52492 * 62.92540 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4208 0.0000 4 6 2.2581 2.0741 1.1972 5 6 2.7237 3.3757 1.1973 6 6 2.9537 4.0275 0.0002 7 6 2.7231 3.3759 -1.1970 8 6 2.2621 2.0728 -1.1971 9 6 2.0405 -0.7222 1.2496 10 6 1.5760 -2.1813 1.2121 11 6 2.0770 -2.8321 -0.0809 12 6 1.5650 -2.0284 -1.2791 13 1 0.4755 -2.0554 -1.2961 14 6 2.1025 -2.6280 -2.5530 15 1 2.7445 -3.4955 -2.5127 16 6 1.7694 -2.0728 -3.7703 17 7 0.9873 -1.0166 -3.8194 18 14 2.4294 -2.8206 -5.3497 19 1 3.2798 -3.9936 -5.0244 20 1 1.2947 -3.2540 -6.2041 21 1 3.2379 -1.8089 -6.0764 22 8 2.0067 -0.6741 -1.1664 23 1 -0.3634 0.5133 0.8901 24 1 -0.3634 0.5142 -0.8898 25 1 -0.3634 -1.0277 -0.0005 26 1 2.0745 1.5662 2.1325 27 1 2.9034 3.8848 2.1327 28 1 3.3132 5.0459 0.0002 29 1 2.9024 3.8853 -2.1323 30 1 2.0816 1.5639 -2.1324 31 1 1.6419 -0.2357 2.1398 32 1 3.1298 -0.6872 1.2721 33 1 0.4870 -2.2181 1.2407 34 1 1.9816 -2.7167 2.0706 35 1 1.7044 -3.8546 -0.1421 36 1 3.1669 -2.8397 -0.0863 37 1 0.7533 -0.6258 -4.6759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309403987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:09 Heat of formation + Delta-G solvation = -32.081564 kcal Electronic energy + Delta-G solvation = -18477.225642 eV Core-core repulsion = 15797.861861 eV Total energy + Delta-G solvation = -2679.363781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55544 -37.72545 -33.38629 -32.55080 -31.73968 -30.35166 -28.95166 -27.54445 -25.25677 -23.08658 -22.54160 -21.34259 -20.33846 -18.13546 -16.91673 -16.26104 -15.27824 -14.84558 -14.46542 -14.24615 -14.06116 -13.75102 -13.19009 -12.91733 -12.59255 -12.46858 -12.10211 -11.75798 -11.59354 -11.45667 -11.02602 -10.93567 -10.62597 -10.55562 -10.47545 -10.20645 -10.14531 -9.79944 -9.51381 -8.84649 -8.46733 -8.44774 -8.27415 -7.75577 -6.01023 -4.12076 1.80806 1.89977 3.29851 3.38230 3.41894 4.26236 4.42216 4.87220 5.22257 5.32357 5.35712 5.48666 5.54276 5.61499 5.69891 5.84273 5.94379 6.00236 6.07001 6.14573 6.29613 6.33342 6.38602 6.46832 6.53913 6.59750 6.66305 6.81217 6.87205 6.92100 6.94189 7.00880 7.11746 7.29707 7.51703 7.56468 7.90904 8.30740 8.80121 9.15386 9.57658 11.06209 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.008462 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.144462 B = 3308.124110 C = 4187.506890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.056 4.056 4 C -0.122 4.122 5 C -0.132 4.132 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.084 4.084 9 C -0.136 4.136 10 C -0.122 4.122 11 C -0.145 4.145 12 C 0.217 3.783 13 H 0.020 0.980 14 C -0.525 4.525 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.859 5.859 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 O -0.342 6.342 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 5.781 8.827 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.106 3.894 3 C -0.056 4.056 4 C -0.140 4.140 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.147 4.147 8 C -0.102 4.102 9 C -0.173 4.173 10 C -0.159 4.159 11 C -0.183 4.183 12 C 0.162 3.838 13 H 0.038 0.962 14 C -0.562 4.562 15 H 0.081 0.919 16 C -0.127 4.127 17 N -0.495 5.495 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 O -0.261 6.261 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.663 5.985 8.573 10.477 hybrid contribution 0.231 -0.401 -0.655 0.802 sum 0.894 5.584 7.919 9.731 Atomic orbital electron populations 1.22304 0.96055 1.02344 1.01241 1.19930 0.92426 0.88540 0.88527 1.19831 0.97672 0.95028 0.93034 1.21010 1.00552 0.94891 0.97556 1.20956 1.01401 0.95113 0.97575 1.21026 1.01734 0.99483 0.92876 1.21176 1.00475 0.95359 0.97647 1.21341 0.95784 0.93534 0.99520 1.22180 1.01099 0.96235 0.97822 1.21664 1.00406 0.95424 0.98407 1.22269 1.00808 0.99565 0.95657 1.19737 0.94451 0.78202 0.91404 0.96235 1.21049 1.32508 1.12923 0.89704 0.91880 1.25039 0.94184 0.94417 0.99048 1.70042 1.33854 1.20530 1.25066 0.86600 0.78881 0.79321 0.83530 1.19695 1.20981 1.20893 1.88392 1.72370 1.27230 1.38153 0.93686 0.91694 0.91728 0.86394 0.86833 0.86964 0.86615 0.84087 0.92473 0.91816 0.92382 0.93234 0.92563 0.92601 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 7.92 37.16 0.29 -2.85 16 2 C 0.15 2.98 0.93 -91.72 -0.09 2.89 16 3 C -0.06 -1.06 4.84 -104.62 -0.51 -1.57 16 4 C -0.12 -1.97 9.14 -39.58 -0.36 -2.33 16 5 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 6 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 7 C -0.13 -2.13 10.05 -39.58 -0.40 -2.52 16 8 C -0.08 -1.66 9.35 -39.59 -0.37 -2.03 16 9 C -0.14 -2.41 4.14 -26.59 -0.11 -2.52 16 10 C -0.12 -2.15 5.72 -26.55 -0.15 -2.30 16 11 C -0.15 -3.07 5.36 -26.59 -0.14 -3.21 16 12 C 0.22 5.48 2.17 -27.84 -0.06 5.42 16 13 H 0.02 0.54 6.34 -51.93 -0.33 0.21 16 14 C -0.52 -14.56 8.79 -34.44 -0.30 -14.86 16 15 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 16 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 17 N -0.86 -24.48 12.85 55.43 0.71 -23.77 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 O -0.34 -8.57 8.26 -35.23 -0.29 -8.86 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.06 1.27 4.98 -51.92 -0.26 1.02 16 26 H 0.12 1.67 6.24 -52.48 -0.33 1.34 16 27 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.14 3.21 7.49 -52.49 -0.39 2.81 16 31 H 0.06 0.87 6.66 -51.93 -0.35 0.52 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.00 6.62 -51.93 -0.34 0.65 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -29.07 293.28 -8.61 -37.68 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.34 Total: 2.79 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -3.09 Total: -28.43 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.71 Total: -23.77 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.29 Total: -8.86 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.07 -8.61 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309403987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.595 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds