Wall clock time and date at job start Mon Mar 30 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.48038 * 2 1 4 4 C 1.38235 * 119.99743 * 89.74759 * 3 2 1 5 5 C 1.38237 * 120.00004 * 179.76589 * 4 3 2 6 6 C 1.38234 * 119.99943 * 0.51248 * 5 4 3 7 7 C 1.38238 * 119.99681 * 359.74310 * 6 5 4 8 8 C 1.38229 * 120.00294 * 0.02562 * 7 6 5 9 9 C 1.53092 * 109.48026 * 120.02716 * 2 1 3 10 10 C 1.53172 * 109.16383 * 62.38770 * 9 2 1 11 11 C 1.53177 * 109.03844 * 56.98157 * 10 9 2 12 12 C 1.53089 * 109.15942 * 303.01699 * 11 10 9 13 13 H 1.09001 * 109.48460 * 297.61296 * 12 11 10 14 14 C 1.50702 * 109.47729 * 177.59080 * 12 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.72207 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 O 1.42901 * 109.41921 * 57.61114 * 12 11 10 23 23 H 1.08992 * 109.47532 * 299.97193 * 1 2 3 24 24 H 1.09007 * 109.47481 * 59.97728 * 1 2 3 25 25 H 1.09007 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99999 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.99662 * 180.22845 * 5 4 3 28 28 H 1.07996 * 120.00022 * 179.72691 * 6 5 4 29 29 H 1.07998 * 119.99844 * 179.97438 * 7 6 5 30 30 H 1.07995 * 120.00407 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.51860 * 302.47629 * 9 2 1 32 32 H 1.09005 * 109.57000 * 182.32404 * 9 2 1 33 33 H 1.09005 * 109.54081 * 297.10826 * 10 9 2 34 34 H 1.09005 * 109.61425 * 176.89200 * 10 9 2 35 35 H 1.09001 * 109.51987 * 183.11230 * 11 10 9 36 36 H 1.08997 * 109.52492 * 62.92540 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4208 0.0000 4 6 2.2581 2.0741 1.1972 5 6 2.7237 3.3757 1.1973 6 6 2.9537 4.0275 0.0002 7 6 2.7231 3.3759 -1.1970 8 6 2.2621 2.0728 -1.1971 9 6 2.0405 -0.7222 1.2496 10 6 1.5760 -2.1813 1.2121 11 6 2.0770 -2.8321 -0.0809 12 6 1.5650 -2.0284 -1.2791 13 1 0.4755 -2.0554 -1.2961 14 6 2.1025 -2.6280 -2.5530 15 1 2.7445 -3.4955 -2.5127 16 6 1.7694 -2.0728 -3.7703 17 7 0.9873 -1.0166 -3.8194 18 14 2.4294 -2.8206 -5.3497 19 1 3.2798 -3.9936 -5.0244 20 1 1.2947 -3.2540 -6.2041 21 1 3.2379 -1.8089 -6.0764 22 8 2.0067 -0.6741 -1.1664 23 1 -0.3634 0.5133 0.8901 24 1 -0.3634 0.5142 -0.8898 25 1 -0.3634 -1.0277 -0.0005 26 1 2.0745 1.5662 2.1325 27 1 2.9034 3.8848 2.1327 28 1 3.3132 5.0459 0.0002 29 1 2.9024 3.8853 -2.1323 30 1 2.0816 1.5639 -2.1324 31 1 1.6419 -0.2357 2.1398 32 1 3.1298 -0.6872 1.2721 33 1 0.4870 -2.2181 1.2407 34 1 1.9816 -2.7167 2.0706 35 1 1.7044 -3.8546 -0.1421 36 1 3.1669 -2.8397 -0.0863 37 1 0.7533 -0.6258 -4.6759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309403987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:09 Heat of formation + Delta-G solvation = -47.652665 kcal Electronic energy + Delta-G solvation = -18477.900855 eV Core-core repulsion = 15797.861861 eV Total energy + Delta-G solvation = -2680.038994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04940 -39.18460 -35.23443 -34.17183 -33.55511 -31.63685 -30.45073 -29.24808 -27.08669 -24.56470 -24.12355 -22.79369 -21.84480 -19.73875 -18.74743 -17.84804 -16.84685 -16.64737 -16.04586 -15.81411 -15.52475 -15.20258 -14.77152 -14.32246 -14.20041 -14.14413 -13.60017 -13.23249 -13.11725 -13.00716 -12.83884 -12.72647 -12.40542 -12.20689 -11.95269 -11.69609 -11.68017 -11.62939 -11.14537 -10.83177 -10.42196 -9.78071 -9.71649 -9.38341 -8.12633 -6.31675 0.53722 0.61025 1.37813 1.39655 1.51256 2.40211 2.93754 3.07145 3.58468 3.84276 4.09660 4.11692 4.21482 4.26142 4.33298 4.40627 4.45207 4.47795 4.69414 4.71161 4.82072 4.86980 4.92634 5.01350 5.10614 5.14463 5.19733 5.25819 5.32600 5.33997 5.42534 5.61698 5.66421 5.74058 5.83628 5.91588 6.22912 6.26735 6.70896 7.29851 7.44287 8.94072 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.008462 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.144462 B = 3308.124110 C = 4187.506890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 C -0.079 4.079 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.135 4.135 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.116 4.116 11 C -0.140 4.140 12 C 0.217 3.783 13 H -0.009 1.009 14 C -0.552 4.552 15 H 0.059 0.941 16 C 0.028 3.972 17 N -0.889 5.889 18 Si 0.955 3.045 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.283 1.283 22 O -0.374 6.374 23 H 0.078 0.922 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 6.955 11.432 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.094 3.906 3 C -0.079 4.079 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.153 4.153 8 C -0.138 4.138 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.178 4.178 12 C 0.161 3.839 13 H 0.008 0.992 14 C -0.590 4.590 15 H 0.078 0.922 16 C -0.175 4.175 17 N -0.526 5.526 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.209 1.209 22 O -0.294 6.294 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.162 0.838 27 H 0.174 0.826 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.507 7.152 11.187 13.363 hybrid contribution -0.034 -0.671 -1.432 1.582 sum 1.473 6.480 9.755 11.804 Atomic orbital electron populations 1.22207 0.95983 1.01624 1.01179 1.20261 0.92699 0.89518 0.88112 1.19876 0.99389 0.94575 0.94106 1.21270 0.99895 0.95729 0.96951 1.21467 0.98969 0.94287 0.99200 1.21451 1.00077 1.00922 0.91864 1.21342 1.00184 0.94151 0.99619 1.21091 0.99200 0.95334 0.98133 1.22138 1.00774 0.96075 0.97626 1.21646 1.00819 0.95525 0.97334 1.22142 1.00080 0.99482 0.96119 1.19543 0.92676 0.79272 0.92407 0.99156 1.21470 1.32578 1.13355 0.91566 0.92250 1.25845 0.94444 0.94832 1.02333 1.70180 1.35014 1.21714 1.25676 0.85576 0.78420 0.78544 0.79466 1.18915 1.20070 1.20869 1.88288 1.72793 1.27160 1.41174 0.90301 0.95005 0.92702 0.83837 0.82604 0.83217 0.85523 0.89117 0.88724 0.92374 0.91838 0.89864 0.92141 0.93511 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 7.92 71.98 0.57 -5.48 16 2 C 0.13 5.52 0.93 -11.51 -0.01 5.51 16 3 C -0.08 -3.03 4.84 -19.87 -0.10 -3.13 16 4 C -0.12 -3.50 9.14 22.27 0.20 -3.30 16 5 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 6 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 7 C -0.13 -4.42 10.05 22.27 0.22 -4.20 16 8 C -0.12 -4.94 9.35 22.27 0.21 -4.73 16 9 C -0.13 -4.30 4.14 30.68 0.13 -4.17 16 10 C -0.12 -3.89 5.72 30.71 0.18 -3.71 16 11 C -0.14 -5.99 5.36 30.68 0.16 -5.83 16 12 C 0.22 11.45 2.17 29.88 0.06 11.51 16 13 H -0.01 -0.52 6.34 -2.39 -0.02 -0.53 16 14 C -0.55 -32.06 8.79 25.60 0.23 -31.83 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 16 C 0.03 1.63 5.40 84.66 0.46 2.09 16 17 N -0.89 -53.65 12.85 21.45 0.28 -53.38 16 18 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 O -0.37 -19.76 8.26 -148.98 -1.23 -21.00 16 23 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.05 2.23 4.98 -2.38 -0.01 2.22 16 26 H 0.14 3.36 6.24 -2.91 -0.02 3.34 16 27 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.09 4.59 7.49 -2.91 -0.02 4.57 16 31 H 0.09 2.45 6.66 -2.39 -0.02 2.44 16 32 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.06 2.07 6.62 -2.38 -0.02 2.05 16 34 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 Total: -1.00 -67.89 293.28 4.87 -63.01 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.04 Total: 17.28 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 2.76 Total: -52.99 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.28 Total: -53.38 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -1.23 Total: -21.00 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.89 4.87 -63.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309403987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.359 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds