Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.48975 * 2 1 4 4 C 1.38233 * 119.99831 * 269.69947 * 3 2 1 5 5 C 1.38246 * 119.99713 * 179.74417 * 4 3 2 6 6 C 1.38238 * 119.99773 * 0.52107 * 5 4 3 7 7 C 1.38230 * 120.00183 * 359.75107 * 6 5 4 8 8 C 1.38238 * 119.99807 * 89.96473 * 3 2 1 9 9 C 1.53086 * 109.48476 * 239.97008 * 2 1 3 10 10 C 1.53180 * 109.21310 * 297.65472 * 9 2 1 11 11 C 1.53178 * 109.04047 * 302.98730 * 10 9 2 12 12 C 1.53095 * 109.16048 * 56.97896 * 11 10 9 13 13 H 1.08998 * 109.47943 * 182.40682 * 12 11 10 14 14 C 1.50706 * 109.48172 * 62.38650 * 12 11 10 15 15 H 1.08007 * 119.99781 * 354.47258 * 14 12 11 16 16 C 1.37865 * 120.00178 * 174.47166 * 14 12 11 17 17 N 1.31515 * 120.00072 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 120.00035 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.46724 * 90.00164 * 18 16 14 20 20 H 1.48502 * 109.47229 * 209.99925 * 18 16 14 21 21 H 1.48493 * 109.46923 * 329.99957 * 18 16 14 22 22 O 1.42901 * 109.41591 * 302.39539 * 12 11 10 23 23 H 1.09000 * 109.47065 * 162.49529 * 1 2 3 24 24 H 1.08999 * 109.47445 * 282.49666 * 1 2 3 25 25 H 1.08999 * 109.47023 * 42.49672 * 1 2 3 26 26 H 1.07998 * 120.00477 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99305 * 180.29424 * 5 4 3 28 28 H 1.07999 * 119.99286 * 179.76443 * 6 5 4 29 29 H 1.07993 * 119.99950 * 179.97438 * 7 6 5 30 30 H 1.07996 * 120.00813 * 0.02562 * 8 3 2 31 31 H 1.09000 * 109.52519 * 177.72041 * 9 2 1 32 32 H 1.08993 * 109.52505 * 57.59363 * 9 2 1 33 33 H 1.09003 * 109.53914 * 62.86022 * 10 9 2 34 34 H 1.09003 * 109.54380 * 183.03051 * 10 9 2 35 35 H 1.08995 * 109.52044 * 176.88639 * 11 10 9 36 36 H 1.08994 * 109.51986 * 297.01694 * 11 10 9 37 37 H 0.97008 * 119.99785 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0328 1.4206 0.0000 4 6 2.2693 2.0701 -1.1971 5 6 2.7255 3.3751 -1.1971 6 6 2.9554 4.0269 0.0001 7 6 2.7242 3.3755 1.1972 8 6 2.2627 2.0724 1.1972 9 6 2.0406 -0.7222 -1.2495 10 6 1.5758 -2.1814 -1.2136 11 6 2.0766 -2.8337 0.0788 12 6 1.5646 -2.0312 1.2778 13 1 1.9531 -2.4659 2.1987 14 6 0.0582 -2.0681 1.3010 15 1 -0.4832 -2.5328 0.4901 16 6 -0.6289 -1.5088 2.3574 17 7 -1.9434 -1.5415 2.3779 18 14 0.3074 -0.7045 3.7596 19 1 0.5144 0.7342 3.4554 20 1 -0.4726 -0.8376 5.0162 21 1 1.6246 -1.3708 3.9216 22 8 2.0066 -0.6768 1.1665 23 1 -0.3633 -0.9801 -0.3091 24 1 -0.3634 0.2224 1.0033 25 1 -0.3633 0.7577 -0.6942 26 1 2.0942 1.5593 -2.1324 27 1 2.9057 3.8840 -2.1325 28 1 3.3154 5.0451 0.0000 29 1 2.9042 3.8846 2.1324 30 1 2.0824 1.5635 2.1325 31 1 3.1299 -0.6874 -1.2708 32 1 1.6431 -0.2351 -2.1398 33 1 0.4868 -2.2179 -1.2424 34 1 1.9814 -2.7145 -2.0735 35 1 1.7038 -3.8562 0.1388 36 1 3.1665 -2.8424 0.0837 37 1 -2.4268 -1.1476 3.1210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309404000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -12.869023 kcal Electronic energy + Delta-G solvation = -18972.396609 eV Core-core repulsion = 16293.865947 eV Total energy + Delta-G solvation = -2678.530662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79574 -38.00886 -33.09165 -32.74997 -32.24295 -30.47115 -28.95505 -27.88410 -24.73299 -23.38167 -22.53701 -21.43137 -20.32650 -18.35027 -17.12909 -16.48936 -15.22576 -15.09378 -14.54031 -14.19519 -13.96697 -13.58306 -13.19758 -13.04304 -12.63182 -12.54523 -12.31660 -11.96184 -11.70354 -11.53129 -11.04342 -10.82062 -10.73257 -10.35795 -10.28363 -10.07406 -9.94553 -9.70510 -9.43522 -8.80846 -8.55800 -8.45178 -8.33425 -7.99835 -6.13755 -4.09011 1.73499 1.79057 3.38003 3.42446 3.51740 4.17252 4.45237 4.71169 5.18228 5.24333 5.27990 5.43895 5.48719 5.64312 5.67871 5.80317 5.96909 6.01161 6.07646 6.19352 6.33275 6.38516 6.43674 6.49273 6.58443 6.72031 6.75442 6.79353 6.85897 6.95967 6.99456 7.07096 7.29671 7.35992 7.39968 7.62221 7.87386 8.23200 8.66316 8.83517 9.49040 10.96112 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.010831 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.792473 B = 2584.577929 C = 3273.708768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.168 3.832 3 C -0.054 4.054 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.127 4.127 8 C -0.098 4.098 9 C -0.131 4.131 10 C -0.114 4.114 11 C -0.131 4.131 12 C 0.169 3.831 13 H 0.066 0.934 14 C -0.536 4.536 15 H 0.080 0.920 16 C 0.082 3.918 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.272 1.272 20 H -0.301 1.301 21 H -0.265 1.265 22 O -0.392 6.392 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.013 0.987 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 6.197 -5.810 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.128 3.872 3 C -0.054 4.054 4 C -0.138 4.138 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.145 4.145 8 C -0.116 4.116 9 C -0.169 4.169 10 C -0.151 4.151 11 C -0.169 4.169 12 C 0.114 3.886 13 H 0.084 0.916 14 C -0.573 4.573 15 H 0.098 0.902 16 C -0.122 4.122 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.229 1.229 21 H -0.190 1.190 22 O -0.312 6.312 23 H 0.118 0.882 24 H 0.090 0.910 25 H 0.031 0.969 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.123 6.318 -5.578 11.705 hybrid contribution 0.199 0.394 0.653 0.788 sum 8.323 6.711 -4.925 11.771 Atomic orbital electron populations 1.22876 0.92847 1.02455 1.02230 1.19849 0.94585 0.86615 0.86131 1.19978 0.96746 0.95640 0.93044 1.21032 1.00197 0.94880 0.97658 1.21006 1.00875 0.94959 0.97663 1.21016 1.01857 0.99547 0.92783 1.21133 1.00426 0.95147 0.97772 1.21197 0.97430 0.94059 0.98895 1.22107 1.00155 0.96732 0.97887 1.21544 1.02145 0.94581 0.96832 1.21969 0.98501 0.99791 0.96629 1.20313 0.95065 0.79179 0.94083 0.91589 1.21336 0.89575 1.38591 1.07809 0.90221 1.24893 0.94577 0.94886 0.97814 1.69935 1.06435 1.44276 1.31976 0.86677 0.79982 0.80955 0.80724 1.19807 1.22907 1.19012 1.87815 1.73790 1.27759 1.41861 0.88163 0.91000 0.96859 0.86024 0.86595 0.86796 0.86635 0.85499 0.92478 0.92140 0.90490 0.93653 0.91961 0.93848 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 6.98 37.16 0.26 -3.07 16 2 C 0.17 3.46 0.94 -91.73 -0.09 3.38 16 3 C -0.05 -1.03 4.77 -104.62 -0.50 -1.53 16 4 C -0.12 -1.94 9.14 -39.58 -0.36 -2.31 16 5 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 6 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 7 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 8 C -0.10 -1.88 9.35 -39.58 -0.37 -2.25 16 9 C -0.13 -2.34 4.12 -26.59 -0.11 -2.45 16 10 C -0.11 -2.07 5.62 -26.55 -0.15 -2.22 16 11 C -0.13 -2.57 5.60 -26.59 -0.15 -2.72 16 12 C 0.17 3.91 2.63 -27.83 -0.07 3.83 16 13 H 0.07 1.58 6.81 -51.93 -0.35 1.22 16 14 C -0.54 -13.84 5.28 -34.44 -0.18 -14.02 16 15 H 0.08 2.20 6.29 -52.48 -0.33 1.87 16 16 C 0.08 2.23 3.63 -17.82 -0.06 2.17 16 17 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 18 Si 0.89 22.09 25.84 -169.99 -4.39 17.70 16 19 H -0.27 -6.72 6.40 56.52 0.36 -6.36 16 20 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.27 -6.49 6.38 56.52 0.36 -6.13 16 22 O -0.39 -9.00 7.38 -35.23 -0.26 -9.26 16 23 H 0.10 2.39 3.48 -51.93 -0.18 2.21 16 24 H 0.07 1.84 5.25 -51.93 -0.27 1.56 16 25 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 26 H 0.12 1.76 6.22 -52.49 -0.33 1.43 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.13 2.68 6.78 -52.49 -0.36 2.32 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.96 6.66 -51.93 -0.35 0.62 16 33 H 0.08 1.52 5.33 -51.93 -0.28 1.24 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 275.17 15.07 4.15 4.15 Total: -1.00 -28.14 275.17 -7.74 -35.89 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.03 Total: 4.54 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -2.98 Total: -28.14 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.77 Total: -24.87 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.26 Total: -9.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.39 Total: 17.70 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.14 -7.74 -35.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309404000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.018 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds