Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.48975 * 2 1 4 4 C 1.38233 * 119.99831 * 269.69947 * 3 2 1 5 5 C 1.38246 * 119.99713 * 179.74417 * 4 3 2 6 6 C 1.38238 * 119.99773 * 0.52107 * 5 4 3 7 7 C 1.38230 * 120.00183 * 359.75107 * 6 5 4 8 8 C 1.38238 * 119.99807 * 89.96473 * 3 2 1 9 9 C 1.53086 * 109.48476 * 239.97008 * 2 1 3 10 10 C 1.53180 * 109.21310 * 297.65472 * 9 2 1 11 11 C 1.53178 * 109.04047 * 302.98730 * 10 9 2 12 12 C 1.53095 * 109.16048 * 56.97896 * 11 10 9 13 13 H 1.08998 * 109.47943 * 182.40682 * 12 11 10 14 14 C 1.50706 * 109.48172 * 62.38650 * 12 11 10 15 15 H 1.08007 * 119.99781 * 354.47258 * 14 12 11 16 16 C 1.37865 * 120.00178 * 174.47166 * 14 12 11 17 17 N 1.31515 * 120.00072 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 120.00035 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.46724 * 90.00164 * 18 16 14 20 20 H 1.48502 * 109.47229 * 209.99925 * 18 16 14 21 21 H 1.48493 * 109.46923 * 329.99957 * 18 16 14 22 22 O 1.42901 * 109.41591 * 302.39539 * 12 11 10 23 23 H 1.09000 * 109.47065 * 162.49529 * 1 2 3 24 24 H 1.08999 * 109.47445 * 282.49666 * 1 2 3 25 25 H 1.08999 * 109.47023 * 42.49672 * 1 2 3 26 26 H 1.07998 * 120.00477 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99305 * 180.29424 * 5 4 3 28 28 H 1.07999 * 119.99286 * 179.76443 * 6 5 4 29 29 H 1.07993 * 119.99950 * 179.97438 * 7 6 5 30 30 H 1.07996 * 120.00813 * 0.02562 * 8 3 2 31 31 H 1.09000 * 109.52519 * 177.72041 * 9 2 1 32 32 H 1.08993 * 109.52505 * 57.59363 * 9 2 1 33 33 H 1.09003 * 109.53914 * 62.86022 * 10 9 2 34 34 H 1.09003 * 109.54380 * 183.03051 * 10 9 2 35 35 H 1.08995 * 109.52044 * 176.88639 * 11 10 9 36 36 H 1.08994 * 109.51986 * 297.01694 * 11 10 9 37 37 H 0.97008 * 119.99785 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0328 1.4206 0.0000 4 6 2.2693 2.0701 -1.1971 5 6 2.7255 3.3751 -1.1971 6 6 2.9554 4.0269 0.0001 7 6 2.7242 3.3755 1.1972 8 6 2.2627 2.0724 1.1972 9 6 2.0406 -0.7222 -1.2495 10 6 1.5758 -2.1814 -1.2136 11 6 2.0766 -2.8337 0.0788 12 6 1.5646 -2.0312 1.2778 13 1 1.9531 -2.4659 2.1987 14 6 0.0582 -2.0681 1.3010 15 1 -0.4832 -2.5328 0.4901 16 6 -0.6289 -1.5088 2.3574 17 7 -1.9434 -1.5415 2.3779 18 14 0.3074 -0.7045 3.7596 19 1 0.5144 0.7342 3.4554 20 1 -0.4726 -0.8376 5.0162 21 1 1.6246 -1.3708 3.9216 22 8 2.0066 -0.6768 1.1665 23 1 -0.3633 -0.9801 -0.3091 24 1 -0.3634 0.2224 1.0033 25 1 -0.3633 0.7577 -0.6942 26 1 2.0942 1.5593 -2.1324 27 1 2.9057 3.8840 -2.1325 28 1 3.3154 5.0451 0.0000 29 1 2.9042 3.8846 2.1324 30 1 2.0824 1.5635 2.1325 31 1 3.1299 -0.6874 -1.2708 32 1 1.6431 -0.2351 -2.1398 33 1 0.4868 -2.2179 -1.2424 34 1 1.9814 -2.7145 -2.0735 35 1 1.7038 -3.8562 0.1388 36 1 3.1665 -2.8424 0.0837 37 1 -2.4268 -1.1476 3.1210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309404000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -28.561037 kcal Electronic energy + Delta-G solvation = -18973.077066 eV Core-core repulsion = 16293.865947 eV Total energy + Delta-G solvation = -2679.211119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33369 -39.40138 -34.88352 -34.40934 -33.98388 -31.70538 -30.40271 -29.74948 -26.48074 -24.89858 -24.02690 -22.82048 -21.82309 -20.16344 -18.76872 -18.03901 -16.89140 -16.57037 -16.04931 -15.86059 -15.62210 -15.10806 -14.75699 -14.47924 -14.27831 -14.13352 -13.88707 -13.54437 -13.26968 -13.17431 -12.69236 -12.56473 -12.41472 -11.94949 -11.82495 -11.67326 -11.63429 -11.49257 -11.19008 -10.59788 -10.47939 -9.97504 -9.77360 -9.47657 -8.28655 -6.22510 0.49828 0.54708 1.32997 1.36501 1.46956 2.37020 2.85384 2.98586 3.40037 3.82644 4.07028 4.16837 4.20563 4.22358 4.32793 4.42235 4.45782 4.58335 4.69145 4.77807 4.88140 4.91824 4.94031 5.07406 5.16955 5.19198 5.22259 5.28488 5.37849 5.45766 5.52133 5.63472 5.68409 5.69394 5.81439 6.00585 6.16462 6.20041 6.68951 6.88060 7.37463 8.84514 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.010831 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.792473 B = 2584.577929 C = 3273.708768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.162 3.838 3 C -0.081 4.081 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.132 4.132 8 C -0.131 4.131 9 C -0.125 4.125 10 C -0.112 4.112 11 C -0.128 4.128 12 C 0.165 3.835 13 H 0.055 0.945 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.044 3.956 17 N -0.930 5.930 18 Si 0.927 3.073 19 H -0.276 1.276 20 H -0.303 1.303 21 H -0.259 1.259 22 O -0.404 6.404 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.026 0.974 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 7.878 -7.955 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.123 3.877 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.143 4.143 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.162 4.162 10 C -0.149 4.149 11 C -0.166 4.166 12 C 0.109 3.891 13 H 0.073 0.927 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.156 4.156 17 N -0.570 5.570 18 Si 0.756 3.244 19 H -0.202 1.202 20 H -0.231 1.231 21 H -0.184 1.184 22 O -0.325 6.325 23 H 0.101 0.899 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.159 0.841 27 H 0.173 0.827 28 H 0.170 0.830 29 H 0.151 0.849 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.430 7.994 -7.725 15.244 hybrid contribution -0.491 -0.051 1.250 1.344 sum 9.940 7.943 -6.475 14.276 Atomic orbital electron populations 1.22672 0.95072 1.01630 1.00087 1.20014 0.92926 0.88229 0.86517 1.19959 0.98913 0.94905 0.94320 1.21275 0.99827 0.95884 0.97048 1.21486 0.98686 0.94053 0.99381 1.21469 1.00031 1.00983 0.91826 1.21373 0.99850 0.93981 0.99788 1.21112 1.00167 0.95809 0.97801 1.22071 1.00825 0.96114 0.97198 1.21533 1.00875 0.95308 0.97229 1.21915 0.99594 0.99318 0.95760 1.20270 0.93042 0.80239 0.95586 0.92733 1.21473 0.91185 1.36482 1.06171 0.92560 1.25367 0.94865 0.95697 0.99651 1.70025 1.07641 1.46522 1.32816 0.86032 0.79292 0.80162 0.78887 1.20243 1.23098 1.18354 1.87772 1.73579 1.27442 1.43671 0.89942 0.94721 0.95563 0.84143 0.82664 0.83038 0.84933 0.88908 0.91242 0.89720 0.92695 0.90250 0.91716 0.91916 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 6.98 71.98 0.50 -5.85 16 2 C 0.16 6.61 0.94 -11.51 -0.01 6.60 16 3 C -0.08 -3.00 4.77 -19.87 -0.09 -3.09 16 4 C -0.12 -3.56 9.14 22.27 0.20 -3.36 16 5 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 6 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 7 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 8 C -0.13 -5.01 9.35 22.27 0.21 -4.80 16 9 C -0.12 -4.14 4.12 30.68 0.13 -4.02 16 10 C -0.11 -3.86 5.62 30.71 0.17 -3.68 16 11 C -0.13 -4.86 5.60 30.69 0.17 -4.69 16 12 C 0.16 7.66 2.63 29.88 0.08 7.74 16 13 H 0.05 2.64 6.81 -2.39 -0.02 2.62 16 14 C -0.52 -27.47 5.28 25.60 0.14 -27.33 16 15 H 0.06 3.23 6.29 -2.91 -0.02 3.22 16 16 C 0.04 2.47 3.63 84.65 0.31 2.78 16 17 N -0.93 -56.00 13.96 21.44 0.30 -55.70 16 18 Si 0.93 47.19 25.84 68.60 1.77 48.96 16 19 H -0.28 -14.12 6.40 99.48 0.64 -13.48 16 20 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 21 H -0.26 -12.76 6.38 99.48 0.64 -12.12 16 22 O -0.40 -18.70 7.38 -148.98 -1.10 -19.79 16 23 H 0.08 4.04 3.48 -2.39 -0.01 4.04 16 24 H 0.03 1.83 5.25 -2.39 -0.01 1.81 16 25 H 0.03 1.09 8.01 -2.39 -0.02 1.07 16 26 H 0.14 3.45 6.22 -2.91 -0.02 3.44 16 27 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.09 4.10 6.78 -2.91 -0.02 4.08 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.40 6.66 -2.39 -0.02 2.38 16 33 H 0.05 2.14 5.33 -2.39 -0.01 2.13 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -63.61 275.17 4.36 -59.25 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.92 Total: 16.13 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 2.47 Total: -48.84 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.10 Total: -19.79 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.77 Total: 48.96 kcal Total: -63.61 4.36 -59.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309404000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.685 kcal (2) G-P(sol) polarization free energy of solvation -63.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds