Wall clock time and date at job start Mon Mar 30 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38259 * 119.99802 * 2 1 4 4 C 1.38217 * 119.99873 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99867 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00349 * 359.81454 * 5 4 3 7 7 C 1.38216 * 120.00140 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99896 * 359.97116 * 7 2 1 9 9 H 1.09000 * 109.48245 * 324.98344 * 8 7 2 10 10 C 1.53091 * 109.47854 * 85.00631 * 8 7 2 11 11 C 1.53177 * 109.16264 * 177.60289 * 10 8 7 12 12 C 1.53179 * 109.10692 * 302.97408 * 11 10 8 13 13 C 1.53280 * 109.06328 * 56.94222 * 12 11 10 14 14 H 1.09003 * 109.45658 * 62.44207 * 13 12 11 15 15 C 1.50700 * 109.45397 * 182.44890 * 13 12 11 16 16 H 1.07997 * 120.00326 * 359.97438 * 15 13 12 17 17 C 1.37880 * 119.99836 * 179.97438 * 15 13 12 18 18 N 1.31514 * 119.99860 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00272 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47164 * 89.99345 * 19 17 15 21 21 H 1.48501 * 109.47555 * 209.99810 * 19 17 15 22 22 H 1.48505 * 109.47150 * 329.99692 * 19 17 15 23 23 O 1.42901 * 109.46155 * 302.44168 * 13 12 11 24 24 H 1.08998 * 109.46687 * 269.97323 * 1 2 3 25 25 H 1.08999 * 109.47229 * 29.97700 * 1 2 3 26 26 H 1.09003 * 109.46800 * 149.97873 * 1 2 3 27 27 H 1.07993 * 119.99778 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00101 * 179.97438 * 4 3 2 29 29 H 1.08007 * 120.00152 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.00598 * 180.22901 * 6 5 4 31 31 H 1.09004 * 109.52607 * 57.69520 * 10 8 7 32 32 H 1.08999 * 109.57497 * 297.53868 * 10 8 7 33 33 H 1.09002 * 109.54459 * 62.88629 * 11 10 8 34 34 H 1.08999 * 109.54390 * 183.06550 * 11 10 8 35 35 H 1.09006 * 109.52033 * 176.93325 * 12 11 10 36 36 H 1.09002 * 109.52377 * 297.11395 * 12 11 10 37 37 H 0.97006 * 120.00131 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1968 0.0039 7 6 2.1981 -1.1970 -0.0005 8 6 1.4447 -2.5021 -0.0005 9 1 0.5343 -2.3962 0.5896 10 6 1.0800 -2.8811 -1.4382 11 6 0.3675 -4.2371 -1.4354 12 6 1.2749 -5.2789 -0.7739 13 6 1.6329 -4.8057 0.6394 14 1 0.7250 -4.7300 1.2379 15 6 2.5742 -5.7951 1.2766 16 1 2.8858 -6.6730 0.7303 17 6 3.0375 -5.5796 2.5572 18 7 2.6584 -4.5103 3.2224 19 14 4.2037 -6.8064 3.3475 20 1 5.6058 -6.4240 3.0422 21 1 3.9998 -6.8067 4.8184 22 1 3.9327 -8.1640 2.8100 23 8 2.2643 -3.5257 0.5673 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6583 2.1326 -0.0004 28 1 4.1205 2.1327 -0.0010 29 1 5.3518 0.0001 -0.0014 30 1 4.1207 -2.1322 0.0076 31 1 1.9872 -2.9475 -2.0387 32 1 0.4192 -2.1233 -1.8592 33 1 -0.5648 -4.1580 -0.8764 34 1 0.1534 -4.5386 -2.4608 35 1 0.7530 -6.2343 -0.7192 36 1 2.1861 -5.3937 -1.3610 37 1 2.9847 -4.3584 4.1232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309415591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:27 Heat of formation + Delta-G solvation = -40.834079 kcal Electronic energy + Delta-G solvation = -18197.692545 eV Core-core repulsion = 15517.949226 eV Total energy + Delta-G solvation = -2679.743318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42508 -37.58724 -33.26290 -32.49804 -32.37742 -31.17623 -28.88581 -26.59944 -25.62837 -23.67049 -21.88480 -21.41609 -20.08938 -19.17946 -16.69299 -15.97112 -15.47450 -14.79320 -14.44153 -14.32482 -13.94258 -13.67385 -13.32459 -13.19639 -12.70217 -12.62744 -12.23898 -11.95383 -11.84807 -11.51251 -11.02558 -10.95333 -10.73501 -10.64907 -10.56016 -10.32167 -10.21726 -9.86147 -9.53638 -8.85537 -8.53372 -8.32276 -8.20437 -7.76519 -5.99885 -4.12554 1.77625 1.87883 3.31678 3.38272 3.40615 4.20149 4.42480 4.87469 5.19091 5.26170 5.34128 5.50381 5.52198 5.55954 5.60207 5.71755 5.79410 5.88413 6.03851 6.06231 6.10200 6.18446 6.25862 6.31629 6.47700 6.51206 6.65088 6.70854 6.83297 6.85490 6.89053 6.90252 7.04539 7.24197 7.49043 7.53041 7.90638 8.29438 8.79123 9.14076 9.57826 11.07337 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.007755 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.961976 B = 3609.585589 C = 4356.129039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.129 4.129 5 C -0.133 4.133 6 C -0.082 4.082 7 C -0.060 4.060 8 C 0.122 3.878 9 H 0.051 0.949 10 C -0.139 4.139 11 C -0.120 4.120 12 C -0.144 4.144 13 C 0.220 3.780 14 H 0.013 0.987 15 C -0.527 4.527 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.858 5.858 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.349 6.349 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 8.583 -7.202 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.060 4.060 8 C 0.063 3.937 9 H 0.069 0.931 10 C -0.177 4.177 11 C -0.158 4.158 12 C -0.182 4.182 13 C 0.165 3.835 14 H 0.031 0.969 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.493 5.493 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.268 6.268 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.487 8.705 -6.966 11.423 hybrid contribution 0.473 -0.556 0.434 0.849 sum -2.014 8.149 -6.531 10.636 Atomic orbital electron populations 1.20851 0.91781 1.02376 1.02341 1.19662 0.95748 0.92566 1.00684 1.20828 0.94205 0.96853 1.02909 1.20989 0.94255 0.97636 1.01828 1.21125 0.99547 0.92667 1.01766 1.21145 0.94030 0.98373 0.96413 1.19736 0.94101 0.93635 0.98548 1.20592 0.93386 0.87337 0.92385 0.93094 1.22151 1.00436 0.97017 0.98091 1.21625 0.98765 0.95643 0.99753 1.22297 0.98406 0.97377 1.00138 1.19733 0.94059 0.80888 0.88859 0.96922 1.20991 1.31156 1.05669 0.98618 0.91822 1.25070 0.95672 0.94952 0.97088 1.70044 1.42385 1.25621 1.11288 0.86642 0.81527 0.81654 0.78432 1.20496 1.21156 1.19757 1.88348 1.39682 1.18046 1.80705 0.91244 0.92068 0.91200 0.86755 0.86870 0.86645 0.84881 0.91779 0.92475 0.92679 0.93079 0.92456 0.92506 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.22 36.01 0.33 -1.28 16 2 C -0.09 -1.44 5.88 -104.62 -0.62 -2.05 16 3 C -0.13 -1.93 9.70 -39.58 -0.38 -2.32 16 4 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 5 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 6 C -0.08 -1.59 9.35 -39.58 -0.37 -1.96 16 7 C -0.06 -1.16 5.07 -104.62 -0.53 -1.70 16 8 C 0.12 2.54 2.16 -27.84 -0.06 2.48 16 9 H 0.05 1.09 6.99 -51.93 -0.36 0.73 16 10 C -0.14 -2.48 5.23 -26.59 -0.14 -2.62 16 11 C -0.12 -2.13 6.02 -26.55 -0.16 -2.29 16 12 C -0.14 -3.05 5.38 -26.49 -0.14 -3.19 16 13 C 0.22 5.66 2.50 -27.74 -0.07 5.59 16 14 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 15 C -0.53 -14.78 8.79 -34.44 -0.30 -15.08 16 16 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 17 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 18 N -0.86 -25.38 12.84 55.43 0.71 -24.67 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 O -0.35 -8.92 8.27 -35.23 -0.29 -9.21 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.07 0.97 5.41 -51.93 -0.28 0.68 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.13 2.82 7.34 -52.49 -0.39 2.44 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.88 6.87 -51.93 -0.36 0.52 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -30.19 298.68 -9.01 -39.20 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.58 Total: 0.97 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -3.33 Total: -27.17 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.71 Total: -24.67 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.29 Total: -9.21 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.19 -9.01 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309415591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.632 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds