Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 119.99618 * 2 1 4 4 C 1.38213 * 119.99484 * 180.27612 * 3 2 1 5 5 C 1.38254 * 120.00381 * 359.74418 * 4 3 2 6 6 C 1.38217 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00320 * 179.77294 * 2 1 3 8 8 C 1.50698 * 120.00031 * 359.97438 * 7 2 1 9 9 H 1.09006 * 109.48963 * 34.76125 * 8 7 2 10 10 C 1.53089 * 109.48550 * 274.73270 * 8 7 2 11 11 C 1.53177 * 109.16584 * 182.40618 * 10 8 7 12 12 C 1.53179 * 109.10692 * 56.93603 * 11 10 8 13 13 C 1.53100 * 109.15719 * 303.14927 * 12 11 10 14 14 H 1.08998 * 109.49112 * 177.50691 * 13 12 11 15 15 C 1.50699 * 109.41053 * 297.49715 * 13 12 11 16 16 H 1.07994 * 119.99705 * 359.97438 * 15 13 12 17 17 C 1.37873 * 119.99977 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00240 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00046 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46883 * 89.99906 * 19 17 15 21 21 H 1.48495 * 109.47471 * 209.99881 * 19 17 15 22 22 H 1.48496 * 109.46876 * 330.00448 * 19 17 15 23 23 O 1.42902 * 109.48210 * 154.78599 * 8 7 2 24 24 H 1.09000 * 109.47146 * 270.22964 * 1 2 3 25 25 H 1.09000 * 109.47210 * 30.23580 * 1 2 3 26 26 H 1.08998 * 109.46605 * 150.22850 * 1 2 3 27 27 H 1.07998 * 119.99975 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.99569 * 179.72919 * 4 3 2 29 29 H 1.08000 * 120.00160 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.00270 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.52464 * 62.50181 * 10 8 7 32 32 H 1.08995 * 109.57222 * 302.34253 * 10 8 7 33 33 H 1.09002 * 109.54459 * 176.84823 * 11 10 8 34 34 H 1.08999 * 109.54390 * 297.02744 * 11 10 8 35 35 H 1.08997 * 109.52685 * 62.97182 * 12 11 10 36 36 H 1.08999 * 109.52226 * 183.15941 * 12 11 10 37 37 H 0.96999 * 119.99957 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2718 0.0002 -0.0062 6 6 3.5808 -1.1969 -0.0014 7 6 2.1982 -1.1969 0.0047 8 6 1.4448 -2.5020 0.0105 9 1 0.5316 -2.3973 -0.5755 10 6 1.0869 -2.8787 1.4505 11 6 0.3747 -4.2348 1.4534 12 6 1.2783 -5.2771 0.7873 13 6 1.6304 -4.8067 -0.6264 14 1 2.3091 -5.5229 -1.0895 15 6 0.3713 -4.7036 -1.4481 16 1 -0.5831 -4.9492 -1.0066 17 6 0.4380 -4.2958 -2.7634 18 7 1.6004 -3.9972 -3.3013 19 14 -1.1226 -4.1687 -3.7822 20 1 -1.6920 -2.8039 -3.6473 21 1 -0.8058 -4.4341 -5.2085 22 1 -2.1108 -5.1671 -3.3005 23 8 2.2619 -3.5265 -0.5594 24 1 -0.3633 0.0041 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3632 -0.8920 -0.5103 27 1 1.6582 2.1327 0.0004 28 1 4.1204 2.1328 -0.0102 29 1 5.3517 0.0002 -0.0111 30 1 4.1208 -2.1321 -0.0021 31 1 0.4275 -2.1202 1.8724 32 1 1.9963 -2.9436 2.0477 33 1 0.1668 -4.5354 2.4803 34 1 -0.5610 -4.1565 0.8999 35 1 2.1923 -5.3923 1.3698 36 1 0.7556 -6.2322 0.7352 37 1 1.6473 -3.7100 -4.2266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309415593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -39.034934 kcal Electronic energy + Delta-G solvation = -18543.881935 eV Core-core repulsion = 15864.216633 eV Total energy + Delta-G solvation = -2679.665301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35383 -37.61221 -33.00902 -32.39909 -32.29236 -31.15887 -28.73469 -26.47688 -25.59931 -23.56489 -22.15391 -21.34976 -20.03794 -18.93533 -16.42251 -16.11894 -15.09550 -14.90528 -14.56743 -14.05758 -13.77646 -13.53356 -13.30303 -13.09982 -12.64450 -12.58428 -12.03824 -11.78719 -11.70016 -11.42545 -11.25086 -10.93857 -10.81805 -10.61207 -10.48713 -10.26226 -10.15631 -9.70232 -9.49729 -8.73520 -8.45864 -8.27694 -8.13100 -7.66198 -5.98429 -4.13875 1.85239 1.93019 3.27095 3.35344 3.37226 4.27050 4.40028 5.01146 5.27520 5.32517 5.39310 5.56737 5.60302 5.68870 5.79906 5.83459 5.88983 5.98622 6.16064 6.19406 6.25566 6.33221 6.42494 6.46997 6.55527 6.62742 6.73316 6.88800 6.91594 6.95571 7.05713 7.08134 7.12636 7.35687 7.55159 7.71350 7.87752 8.22277 8.82877 9.09114 9.58413 11.05688 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.009115 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.311640 B = 3070.973592 C = 3497.715824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.132 4.132 5 C -0.134 4.134 6 C -0.088 4.088 7 C -0.057 4.057 8 C 0.141 3.859 9 H 0.077 0.923 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.142 4.142 13 C 0.212 3.788 14 H 0.061 0.939 15 C -0.559 4.559 16 H 0.057 0.943 17 C 0.080 3.920 18 N -0.856 5.856 19 Si 0.879 3.121 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.367 6.367 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 7.026 7.472 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.106 4.106 7 C -0.057 4.057 8 C 0.082 3.918 9 H 0.094 0.906 10 C -0.173 4.173 11 C -0.146 4.146 12 C -0.180 4.180 13 C 0.157 3.843 14 H 0.078 0.922 15 C -0.597 4.597 16 H 0.075 0.925 17 C -0.126 4.126 18 N -0.492 5.492 19 Si 0.707 3.293 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 O -0.286 6.286 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.693 7.102 7.239 10.165 hybrid contribution -1.057 0.082 -0.637 1.237 sum -0.364 7.185 6.603 9.765 Atomic orbital electron populations 1.20876 0.91721 1.03105 1.01868 1.19675 0.95872 0.92534 1.00400 1.20847 0.94197 0.96905 1.02740 1.20960 0.94247 0.97578 1.02219 1.21091 0.99370 0.92738 1.02016 1.21076 0.94063 0.98044 0.97385 1.19871 0.94009 0.94225 0.97595 1.20400 0.94178 0.85331 0.91880 0.90566 1.22079 0.99829 0.97335 0.98076 1.21445 0.99690 0.94896 0.98550 1.22184 0.97902 0.98116 0.99801 1.19707 0.93608 0.82053 0.88973 0.92150 1.21527 0.93681 1.48193 0.96326 0.92501 1.25020 0.95498 0.94458 0.97626 1.70049 1.23378 1.42411 1.13331 0.86812 0.84146 0.78523 0.79853 1.20537 1.21119 1.19812 1.87895 1.40450 1.18707 1.81534 0.91559 0.92180 0.90459 0.86819 0.86969 0.86791 0.85337 0.92751 0.92714 0.94054 0.91324 0.94092 0.92558 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.43 36.01 0.34 -1.53 16 2 C -0.08 -1.51 5.88 -104.62 -0.62 -2.12 16 3 C -0.13 -2.02 9.70 -39.58 -0.38 -2.41 16 4 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 5 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 6 C -0.09 -1.69 9.35 -39.58 -0.37 -2.06 16 7 C -0.06 -1.14 5.07 -104.62 -0.53 -1.67 16 8 C 0.14 3.06 2.09 -27.84 -0.06 3.01 16 9 H 0.08 1.84 5.10 -51.93 -0.26 1.58 16 10 C -0.14 -2.55 5.40 -26.59 -0.14 -2.70 16 11 C -0.11 -2.06 5.77 -26.55 -0.15 -2.21 16 12 C -0.14 -2.96 5.59 -26.59 -0.15 -3.11 16 13 C 0.21 5.31 3.16 -27.83 -0.09 5.23 16 14 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 15 C -0.56 -14.87 6.59 -34.44 -0.23 -15.10 16 16 H 0.06 1.49 6.87 -52.49 -0.36 1.13 16 17 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 18 N -0.86 -24.79 12.84 55.43 0.71 -24.08 16 19 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 O -0.37 -9.21 8.47 -35.23 -0.30 -9.51 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 26 H 0.08 1.36 6.02 -51.93 -0.31 1.05 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.13 2.57 7.35 -52.49 -0.39 2.18 16 31 H 0.05 0.92 7.97 -51.93 -0.41 0.50 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.37 6.86 -51.93 -0.36 1.01 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -28.98 295.30 -8.88 -37.86 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.45 Total: 2.92 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -3.27 Total: -27.56 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.71 Total: -24.08 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.30 Total: -9.51 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.98 -8.88 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309415593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.172 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds