Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 119.99618 * 2 1 4 4 C 1.38213 * 119.99484 * 180.27612 * 3 2 1 5 5 C 1.38254 * 120.00381 * 359.74418 * 4 3 2 6 6 C 1.38217 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00320 * 179.77294 * 2 1 3 8 8 C 1.50698 * 120.00031 * 359.97438 * 7 2 1 9 9 H 1.09006 * 109.48963 * 34.76125 * 8 7 2 10 10 C 1.53089 * 109.48550 * 274.73270 * 8 7 2 11 11 C 1.53177 * 109.16584 * 182.40618 * 10 8 7 12 12 C 1.53179 * 109.10692 * 56.93603 * 11 10 8 13 13 C 1.53100 * 109.15719 * 303.14927 * 12 11 10 14 14 H 1.08998 * 109.49112 * 177.50691 * 13 12 11 15 15 C 1.50699 * 109.41053 * 297.49715 * 13 12 11 16 16 H 1.07994 * 119.99705 * 359.97438 * 15 13 12 17 17 C 1.37873 * 119.99977 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00240 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00046 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46883 * 89.99906 * 19 17 15 21 21 H 1.48495 * 109.47471 * 209.99881 * 19 17 15 22 22 H 1.48496 * 109.46876 * 330.00448 * 19 17 15 23 23 O 1.42902 * 109.48210 * 154.78599 * 8 7 2 24 24 H 1.09000 * 109.47146 * 270.22964 * 1 2 3 25 25 H 1.09000 * 109.47210 * 30.23580 * 1 2 3 26 26 H 1.08998 * 109.46605 * 150.22850 * 1 2 3 27 27 H 1.07998 * 119.99975 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.99569 * 179.72919 * 4 3 2 29 29 H 1.08000 * 120.00160 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.00270 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.52464 * 62.50181 * 10 8 7 32 32 H 1.08995 * 109.57222 * 302.34253 * 10 8 7 33 33 H 1.09002 * 109.54459 * 176.84823 * 11 10 8 34 34 H 1.08999 * 109.54390 * 297.02744 * 11 10 8 35 35 H 1.08997 * 109.52685 * 62.97182 * 12 11 10 36 36 H 1.08999 * 109.52226 * 183.15941 * 12 11 10 37 37 H 0.96999 * 119.99957 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2718 0.0002 -0.0062 6 6 3.5808 -1.1969 -0.0014 7 6 2.1982 -1.1969 0.0047 8 6 1.4448 -2.5020 0.0105 9 1 0.5316 -2.3973 -0.5755 10 6 1.0869 -2.8787 1.4505 11 6 0.3747 -4.2348 1.4534 12 6 1.2783 -5.2771 0.7873 13 6 1.6304 -4.8067 -0.6264 14 1 2.3091 -5.5229 -1.0895 15 6 0.3713 -4.7036 -1.4481 16 1 -0.5831 -4.9492 -1.0066 17 6 0.4380 -4.2958 -2.7634 18 7 1.6004 -3.9972 -3.3013 19 14 -1.1226 -4.1687 -3.7822 20 1 -1.6920 -2.8039 -3.6473 21 1 -0.8058 -4.4341 -5.2085 22 1 -2.1108 -5.1671 -3.3005 23 8 2.2619 -3.5265 -0.5594 24 1 -0.3633 0.0041 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3632 -0.8920 -0.5103 27 1 1.6582 2.1327 0.0004 28 1 4.1204 2.1328 -0.0102 29 1 5.3517 0.0002 -0.0111 30 1 4.1208 -2.1321 -0.0021 31 1 0.4275 -2.1202 1.8724 32 1 1.9963 -2.9436 2.0477 33 1 0.1668 -4.5354 2.4803 34 1 -0.5610 -4.1565 0.8999 35 1 2.1923 -5.3923 1.3698 36 1 0.7556 -6.2322 0.7352 37 1 1.6473 -3.7100 -4.2266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309415593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -53.993930 kcal Electronic energy + Delta-G solvation = -18544.530605 eV Core-core repulsion = 15864.216633 eV Total energy + Delta-G solvation = -2680.313972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83256 -39.22469 -34.78382 -34.11954 -33.85523 -32.71463 -30.32089 -27.82385 -27.47282 -25.18611 -23.89809 -22.72464 -21.43501 -20.71105 -18.35609 -17.54147 -16.76124 -16.62598 -16.19996 -15.62147 -15.36177 -15.10312 -14.85948 -14.69521 -14.17406 -13.91333 -13.62899 -13.41190 -13.04373 -12.99707 -12.83136 -12.74631 -12.49574 -12.40292 -11.96173 -11.83332 -11.77523 -11.48704 -11.12880 -10.70345 -10.44427 -9.81290 -9.53546 -9.26508 -8.08514 -6.29682 0.53826 0.60031 1.36916 1.38451 1.48002 2.39502 2.93959 3.12773 3.53476 4.00828 4.08733 4.13312 4.24795 4.26704 4.30453 4.45636 4.48519 4.56550 4.76717 4.78894 4.83299 4.91906 4.95302 5.01433 5.05256 5.19925 5.27461 5.31435 5.36928 5.40041 5.51794 5.63737 5.66269 5.71288 5.82016 5.96033 6.17579 6.24555 6.77508 7.17881 7.47802 8.95631 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.009115 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.311640 B = 3070.973592 C = 3497.715824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.124 4.124 5 C -0.136 4.136 6 C -0.115 4.115 7 C -0.089 4.089 8 C 0.142 3.858 9 H 0.047 0.953 10 C -0.128 4.128 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.205 3.795 14 H 0.023 0.977 15 C -0.560 4.560 16 H 0.059 0.941 17 C 0.030 3.970 18 N -0.895 5.895 19 Si 0.941 3.059 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.263 1.263 23 O -0.391 6.391 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 9.194 8.706 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.133 4.133 7 C -0.089 4.089 8 C 0.084 3.916 9 H 0.064 0.936 10 C -0.166 4.166 11 C -0.142 4.142 12 C -0.174 4.174 13 C 0.149 3.851 14 H 0.041 0.959 15 C -0.598 4.598 16 H 0.077 0.923 17 C -0.172 4.172 18 N -0.533 5.533 19 Si 0.766 3.234 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.187 1.187 23 O -0.310 6.310 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.281 9.262 8.489 12.567 hybrid contribution -0.691 -0.541 -0.998 1.329 sum -0.972 8.721 7.492 11.538 Atomic orbital electron populations 1.20880 0.90553 1.02751 1.03079 1.19968 0.96981 0.92484 1.00391 1.21272 0.94735 0.97324 1.01027 1.21426 0.94362 0.98469 0.99941 1.21373 1.00698 0.92182 1.01108 1.21049 0.94121 0.98542 0.99561 1.19908 0.94478 0.94284 1.00240 1.20435 0.92820 0.85506 0.92833 0.93554 1.22013 1.00359 0.97928 0.96259 1.21430 0.98412 0.94284 1.00044 1.22067 0.98978 0.98943 0.97384 1.19618 0.92162 0.81988 0.91312 0.95895 1.21796 0.94211 1.47151 0.96653 0.92284 1.25770 0.98279 0.94294 0.98905 1.70201 1.25567 1.44077 1.13428 0.85828 0.80668 0.78775 0.78091 1.20013 1.21114 1.18724 1.87826 1.41430 1.19300 1.82485 0.89530 0.89960 0.93265 0.83384 0.83073 0.84431 0.87690 0.90459 0.92445 0.90578 0.92543 0.93081 0.91903 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 9.43 71.24 0.67 -2.78 16 2 C -0.10 -3.35 5.88 -19.86 -0.12 -3.47 16 3 C -0.13 -3.53 9.70 22.27 0.22 -3.31 16 4 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 5 C -0.14 -4.24 10.05 22.27 0.22 -4.01 16 6 C -0.11 -4.50 9.35 22.27 0.21 -4.29 16 7 C -0.09 -3.62 5.07 -19.87 -0.10 -3.72 16 8 C 0.14 6.36 2.09 29.88 0.06 6.42 16 9 H 0.05 2.33 5.10 -2.38 -0.01 2.32 16 10 C -0.13 -4.74 5.40 30.68 0.17 -4.58 16 11 C -0.10 -3.84 5.77 30.71 0.18 -3.66 16 12 C -0.14 -5.68 5.59 30.69 0.17 -5.51 16 13 C 0.21 10.72 3.16 29.88 0.09 10.82 16 14 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.56 -30.63 6.59 25.60 0.17 -30.46 16 16 H 0.06 3.13 6.87 -2.91 -0.02 3.11 16 17 C 0.03 1.68 5.40 84.65 0.46 2.13 16 18 N -0.90 -54.02 12.84 21.45 0.28 -53.75 16 19 Si 0.94 43.75 29.54 68.60 2.03 45.77 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 O -0.39 -20.61 8.47 -148.98 -1.26 -21.87 16 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 26 H 0.05 1.74 6.02 -2.39 -0.01 1.72 16 27 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.10 4.48 7.35 -2.91 -0.02 4.46 16 31 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.21 6.86 -2.39 -0.02 2.19 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -65.19 295.30 4.70 -60.48 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.04 Total: 18.89 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 2.62 Total: -49.53 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.28 Total: -53.75 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.26 Total: -21.87 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -65.19 4.70 -60.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309415593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.489 kcal (2) G-P(sol) polarization free energy of solvation -65.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds