Wall clock time and date at job start Mon Mar 30 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99922 * 2 1 4 4 C 1.38220 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99987 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00032 * 359.70073 * 5 4 3 7 7 C 1.38215 * 119.99993 * 179.97438 * 2 1 3 8 8 C 1.50697 * 119.99823 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.48389 * 325.02476 * 8 7 2 10 10 C 1.53092 * 109.48159 * 85.05919 * 8 7 2 11 11 C 1.53172 * 109.16578 * 177.58908 * 10 8 7 12 12 C 1.53173 * 109.03739 * 303.01865 * 11 10 8 13 13 C 1.53099 * 109.16411 * 56.98143 * 12 11 10 14 14 H 1.08996 * 109.49248 * 182.40507 * 13 12 11 15 15 C 1.50696 * 109.47942 * 62.37225 * 13 12 11 16 16 H 1.07999 * 120.00202 * 0.05707 * 15 13 12 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 13 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47035 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 299.99939 * 19 17 15 23 23 O 1.42902 * 109.48030 * 205.00014 * 8 7 2 24 24 H 1.08996 * 109.47072 * 270.01979 * 1 2 3 25 25 H 1.09006 * 109.47582 * 30.01568 * 1 2 3 26 26 H 1.09000 * 109.47272 * 150.02057 * 1 2 3 27 27 H 1.08002 * 120.00007 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99475 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99621 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.99871 * 180.29821 * 6 5 4 31 31 H 1.09002 * 109.52530 * 297.49303 * 10 8 7 32 32 H 1.09002 * 109.52457 * 57.62094 * 10 8 7 33 33 H 1.08999 * 109.54150 * 62.88588 * 11 10 8 34 34 H 1.09001 * 109.54558 * 183.15160 * 11 10 8 35 35 H 1.08999 * 109.52587 * 297.07353 * 12 11 10 36 36 H 1.09003 * 109.52384 * 176.88382 * 12 11 10 37 37 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5806 -1.1969 0.0063 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.5338 -2.3954 0.5910 10 6 1.0810 -2.8830 -1.4358 11 6 0.3688 -4.2391 -1.4319 12 6 1.2767 -5.2783 -0.7670 13 6 1.6327 -4.8049 0.6448 14 1 2.3131 -5.5197 1.1073 15 6 0.3768 -4.6994 1.4710 16 1 -0.5795 -4.9460 1.0339 17 6 0.4487 -4.2885 2.7852 18 7 1.6127 -3.9835 3.3160 19 14 -1.1081 -4.1570 3.8092 20 1 -1.7648 -5.4868 3.8844 21 1 -0.7625 -3.6979 5.1785 22 1 -2.0344 -3.1824 3.1788 23 8 2.2638 -3.5249 0.5714 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6582 2.1327 0.0004 28 1 4.1204 2.1327 0.0010 29 1 5.3517 0.0000 0.0005 30 1 4.1206 -2.1322 0.0111 31 1 0.4200 -2.1257 -1.8573 32 1 1.9887 -2.9490 -2.0358 33 1 -0.5640 -4.1594 -0.8736 34 1 0.1569 -4.5427 -2.4571 35 1 2.1884 -5.3938 -1.3532 36 1 0.7557 -6.2340 -0.7101 37 1 2.4211 -4.0515 2.7842 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309415597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:33 Heat of formation + Delta-G solvation = -45.920520 kcal Electronic energy + Delta-G solvation = -18592.289281 eV Core-core repulsion = 15912.325399 eV Total energy + Delta-G solvation = -2679.963883 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47301 -37.79160 -33.21918 -32.54932 -32.35185 -31.14541 -28.71554 -26.53852 -25.23159 -23.49960 -22.31743 -21.43501 -20.17486 -19.17740 -16.66934 -16.24513 -15.37628 -14.88750 -14.26811 -14.11778 -13.81834 -13.68274 -13.45782 -13.17165 -12.69821 -12.67258 -12.17629 -11.82683 -11.70397 -11.49597 -11.24406 -10.94079 -10.77282 -10.64988 -10.58158 -10.21172 -10.09090 -9.77649 -9.50636 -8.81258 -8.40509 -8.32366 -8.12816 -7.73345 -6.30599 -4.12376 1.78257 1.86042 3.41747 3.42569 3.61980 4.19483 4.52424 4.88490 5.21682 5.30318 5.39641 5.49217 5.51994 5.60827 5.70254 5.74872 5.83860 5.98869 6.07219 6.11985 6.15764 6.23207 6.31618 6.38773 6.45287 6.55047 6.66267 6.79094 6.80033 6.88575 6.94227 6.99091 7.03409 7.22943 7.47284 7.49312 8.05042 8.37834 8.77896 8.91802 9.69628 11.08364 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.009126 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.916725 B = 3067.523278 C = 3485.597427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.133 4.133 6 C -0.091 4.091 7 C -0.061 4.061 8 C 0.144 3.856 9 H 0.079 0.921 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.134 4.134 13 C 0.195 3.805 14 H 0.053 0.947 15 C -0.635 4.635 16 H 0.050 0.950 17 C 0.035 3.965 18 N -0.889 5.889 19 Si 1.058 2.942 20 H -0.288 1.288 21 H -0.282 1.282 22 H -0.288 1.288 23 O -0.388 6.388 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 7.088 -7.981 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.109 4.109 7 C -0.061 4.061 8 C 0.086 3.914 9 H 0.096 0.904 10 C -0.173 4.173 11 C -0.145 4.145 12 C -0.172 4.172 13 C 0.140 3.860 14 H 0.071 0.929 15 C -0.673 4.673 16 H 0.068 0.932 17 C -0.174 4.174 18 N -0.524 5.524 19 Si 0.887 3.113 20 H -0.215 1.215 21 H -0.208 1.208 22 H -0.214 1.214 23 O -0.307 6.307 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.325 7.507 -6.419 9.882 hybrid contribution 0.346 -0.502 -1.580 1.694 sum 0.021 7.004 -7.999 10.632 Atomic orbital electron populations 1.20873 0.91576 1.02415 1.02689 1.19686 0.95949 0.92473 1.00100 1.20863 0.94199 0.96938 1.02561 1.20980 0.94260 0.97613 1.01950 1.21088 0.99405 0.92706 1.01938 1.21055 0.94026 0.98056 0.97721 1.19870 0.94013 0.94160 0.98064 1.20357 0.94057 0.84819 0.92144 0.90350 1.22088 0.99911 0.97443 0.97877 1.21444 0.99721 0.94749 0.98626 1.22041 0.97896 0.98236 0.99066 1.19868 0.93902 0.81669 0.90565 0.92924 1.22288 0.93548 1.52611 0.98862 0.93174 1.25692 1.02843 0.93072 0.95825 1.70634 0.99352 1.41664 1.40711 0.83720 0.74670 0.76506 0.76453 1.21453 1.20753 1.21426 1.87814 1.41632 1.19362 1.81934 0.90964 0.92103 0.90974 0.86651 0.86832 0.86720 0.85510 0.92444 0.92658 0.91138 0.93897 0.94156 0.92491 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.22 36.00 0.33 -1.52 16 2 C -0.08 -1.45 5.88 -104.62 -0.62 -2.06 16 3 C -0.13 -1.98 9.70 -39.58 -0.38 -2.36 16 4 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 5 C -0.13 -2.16 10.05 -39.59 -0.40 -2.55 16 6 C -0.09 -1.73 9.35 -39.59 -0.37 -2.10 16 7 C -0.06 -1.22 5.07 -104.63 -0.53 -1.75 16 8 C 0.14 3.15 1.89 -27.84 -0.05 3.09 16 9 H 0.08 1.91 5.94 -51.93 -0.31 1.60 16 10 C -0.14 -2.56 5.23 -26.60 -0.14 -2.70 16 11 C -0.11 -2.07 5.78 -26.55 -0.15 -2.22 16 12 C -0.13 -2.83 5.59 -26.59 -0.15 -2.97 16 13 C 0.20 4.88 2.77 -27.83 -0.08 4.80 16 14 H 0.05 1.41 8.01 -51.93 -0.42 0.99 16 15 C -0.64 -17.13 6.59 -34.44 -0.23 -17.36 16 16 H 0.05 1.34 6.87 -52.49 -0.36 0.98 16 17 C 0.03 0.97 5.40 -17.82 -0.10 0.88 16 18 N -0.89 -26.68 13.53 55.43 0.75 -25.93 16 19 Si 1.06 24.83 29.90 -169.99 -5.08 19.75 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 O -0.39 -9.60 7.74 -35.23 -0.27 -9.87 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.07 1.15 5.41 -51.93 -0.28 0.87 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 30 H 0.13 2.49 7.34 -52.49 -0.39 2.10 16 31 H 0.06 0.97 6.87 -51.93 -0.36 0.61 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.43 6.85 -51.93 -0.36 1.08 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.28 8.64 6.47 -40.82 -0.26 8.37 16 LS Contribution 291.79 15.07 4.40 4.40 Total: -1.00 -29.64 291.79 -8.79 -38.43 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.33 Total: 4.39 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -3.26 Total: -31.16 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.75 Total: -25.93 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.27 Total: -9.87 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.64 -8.79 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309415597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.493 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds