Wall clock time and date at job start Mon Mar 30 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99922 * 2 1 4 4 C 1.38220 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99987 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00032 * 359.70073 * 5 4 3 7 7 C 1.38215 * 119.99993 * 179.97438 * 2 1 3 8 8 C 1.50697 * 119.99823 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.48389 * 325.02476 * 8 7 2 10 10 C 1.53092 * 109.48159 * 85.05919 * 8 7 2 11 11 C 1.53172 * 109.16578 * 177.58908 * 10 8 7 12 12 C 1.53173 * 109.03739 * 303.01865 * 11 10 8 13 13 C 1.53099 * 109.16411 * 56.98143 * 12 11 10 14 14 H 1.08996 * 109.49248 * 182.40507 * 13 12 11 15 15 C 1.50696 * 109.47942 * 62.37225 * 13 12 11 16 16 H 1.07999 * 120.00202 * 0.05707 * 15 13 12 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 13 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47035 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 299.99939 * 19 17 15 23 23 O 1.42902 * 109.48030 * 205.00014 * 8 7 2 24 24 H 1.08996 * 109.47072 * 270.01979 * 1 2 3 25 25 H 1.09006 * 109.47582 * 30.01568 * 1 2 3 26 26 H 1.09000 * 109.47272 * 150.02057 * 1 2 3 27 27 H 1.08002 * 120.00007 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99475 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99621 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.99871 * 180.29821 * 6 5 4 31 31 H 1.09002 * 109.52530 * 297.49303 * 10 8 7 32 32 H 1.09002 * 109.52457 * 57.62094 * 10 8 7 33 33 H 1.08999 * 109.54150 * 62.88588 * 11 10 8 34 34 H 1.09001 * 109.54558 * 183.15160 * 11 10 8 35 35 H 1.08999 * 109.52587 * 297.07353 * 12 11 10 36 36 H 1.09003 * 109.52384 * 176.88382 * 12 11 10 37 37 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5806 -1.1969 0.0063 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.5338 -2.3954 0.5910 10 6 1.0810 -2.8830 -1.4358 11 6 0.3688 -4.2391 -1.4319 12 6 1.2767 -5.2783 -0.7670 13 6 1.6327 -4.8049 0.6448 14 1 2.3131 -5.5197 1.1073 15 6 0.3768 -4.6994 1.4710 16 1 -0.5795 -4.9460 1.0339 17 6 0.4487 -4.2885 2.7852 18 7 1.6127 -3.9835 3.3160 19 14 -1.1081 -4.1570 3.8092 20 1 -1.7648 -5.4868 3.8844 21 1 -0.7625 -3.6979 5.1785 22 1 -2.0344 -3.1824 3.1788 23 8 2.2638 -3.5249 0.5714 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6582 2.1327 0.0004 28 1 4.1204 2.1327 0.0010 29 1 5.3517 0.0000 0.0005 30 1 4.1206 -2.1322 0.0111 31 1 0.4200 -2.1257 -1.8573 32 1 1.9887 -2.9490 -2.0358 33 1 -0.5640 -4.1594 -0.8736 34 1 0.1569 -4.5427 -2.4571 35 1 2.1884 -5.3938 -1.3532 36 1 0.7557 -6.2340 -0.7101 37 1 2.4211 -4.0515 2.7842 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309415597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:32 Heat of formation + Delta-G solvation = -61.411006 kcal Electronic energy + Delta-G solvation = -18592.960999 eV Core-core repulsion = 15912.325399 eV Total energy + Delta-G solvation = -2680.635601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97552 -39.39697 -35.01233 -34.29157 -33.88120 -32.71398 -30.29770 -27.82873 -27.16225 -25.17379 -24.10762 -22.80535 -21.57181 -20.97238 -18.63259 -17.66714 -16.97355 -16.38040 -15.99850 -15.76827 -15.50576 -15.29354 -15.03515 -14.67077 -14.29233 -13.96002 -13.77741 -13.36316 -13.15644 -12.96819 -12.79293 -12.71572 -12.59084 -12.16522 -11.98273 -11.91408 -11.80660 -11.50875 -11.17868 -10.68506 -10.48582 -9.86986 -9.61413 -9.34245 -8.53421 -6.35223 0.47371 0.54236 1.49885 1.57072 1.75803 2.56543 2.86784 3.11052 3.41237 3.89765 4.02594 4.05408 4.13827 4.16223 4.24799 4.35514 4.42724 4.50829 4.62820 4.72428 4.76421 4.82200 4.84450 4.90906 5.00427 5.09454 5.14468 5.22543 5.27262 5.31687 5.42272 5.49823 5.61165 5.67196 5.85423 5.97861 6.18490 6.21161 6.62261 6.92459 7.55285 8.83304 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.009126 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.916725 B = 3067.523278 C = 3485.597427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.124 4.124 4 C -0.122 4.122 5 C -0.135 4.135 6 C -0.117 4.117 7 C -0.093 4.093 8 C 0.146 3.854 9 H 0.045 0.955 10 C -0.128 4.128 11 C -0.104 4.104 12 C -0.130 4.130 13 C 0.188 3.812 14 H 0.020 0.980 15 C -0.632 4.632 16 H 0.051 0.949 17 C -0.015 4.015 18 N -0.921 5.921 19 Si 1.101 2.899 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.269 1.269 23 O -0.406 6.406 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 9.208 -9.330 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.153 4.153 6 C -0.135 4.135 7 C -0.093 4.093 8 C 0.089 3.911 9 H 0.063 0.937 10 C -0.166 4.166 11 C -0.141 4.141 12 C -0.167 4.167 13 C 0.132 3.868 14 H 0.038 0.962 15 C -0.670 4.670 16 H 0.069 0.931 17 C -0.217 4.217 18 N -0.557 5.557 19 Si 0.924 3.076 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.194 1.194 23 O -0.327 6.327 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.301 9.616 -7.796 12.447 hybrid contribution 0.717 -1.114 -1.199 1.787 sum -0.584 8.502 -8.995 12.391 Atomic orbital electron populations 1.20887 0.90465 1.03639 1.02347 1.19979 0.97033 0.92449 1.00178 1.21303 0.94754 0.97362 1.00765 1.21457 0.94369 0.98531 0.99635 1.21382 1.00759 0.92143 1.00981 1.21043 0.94038 0.98626 0.99819 1.19903 0.94520 0.94143 1.00775 1.20382 0.92606 0.85140 0.93016 0.93677 1.22030 1.00478 0.97957 0.96095 1.21430 0.98355 0.94233 1.00115 1.21952 0.99025 0.98975 0.96784 1.19797 0.92411 0.81786 0.92778 0.96219 1.22552 0.94185 1.51168 0.99087 0.93093 1.27058 1.04610 0.92386 0.97671 1.70762 0.99599 1.44594 1.40705 0.83168 0.71902 0.77810 0.74769 1.19436 1.21399 1.19418 1.87757 1.42342 1.19770 1.82799 0.92038 0.88647 0.91965 0.83160 0.82895 0.84310 0.87715 0.90122 0.92289 0.92579 0.90360 0.92979 0.92026 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.47 9.22 71.23 0.66 -2.81 16 2 C -0.10 -3.27 5.88 -19.87 -0.12 -3.39 16 3 C -0.12 -3.43 9.70 22.27 0.22 -3.22 16 4 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 5 C -0.13 -4.15 10.05 22.27 0.22 -3.92 16 6 C -0.12 -4.55 9.35 22.27 0.21 -4.34 16 7 C -0.09 -3.77 5.07 -19.87 -0.10 -3.87 16 8 C 0.15 6.54 1.89 29.88 0.06 6.59 16 9 H 0.05 2.29 5.94 -2.39 -0.01 2.27 16 10 C -0.13 -4.75 5.23 30.68 0.16 -4.59 16 11 C -0.10 -3.86 5.78 30.71 0.18 -3.68 16 12 C -0.13 -5.46 5.59 30.69 0.17 -5.28 16 13 C 0.19 9.80 2.77 29.88 0.08 9.88 16 14 H 0.02 1.14 8.01 -2.39 -0.02 1.12 16 15 C -0.63 -35.01 6.59 25.60 0.17 -34.84 16 16 H 0.05 2.75 6.87 -2.91 -0.02 2.73 16 17 C -0.02 -0.86 5.40 84.66 0.46 -0.41 16 18 N -0.92 -57.57 13.53 21.45 0.29 -57.28 16 19 Si 1.10 50.42 29.90 68.60 2.05 52.47 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 O -0.41 -21.15 7.74 -148.98 -1.15 -22.30 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 2.10 8.09 -2.38 -0.02 2.08 16 26 H 0.06 1.93 5.41 -2.39 -0.01 1.92 16 27 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.10 4.38 7.34 -2.91 -0.02 4.36 16 31 H 0.08 2.60 6.87 -2.39 -0.02 2.58 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 2.24 6.85 -2.39 -0.02 2.22 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.27 17.22 6.47 -92.71 -0.60 16.62 16 Total: -1.00 -66.98 291.79 4.99 -61.99 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 1.21 Total: 21.99 kcal Atomic # 6 Polarization: -59.45 SS G_CDS: 2.59 Total: -56.87 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.29 Total: -57.28 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.15 Total: -22.30 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -66.98 4.99 -61.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309415597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.580 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds