Wall clock time and date at job start Mon Mar 30 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47080 * 2 1 4 4 C 1.38236 * 120.00138 * 90.00408 * 3 2 1 5 5 C 1.38228 * 120.00023 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99701 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.67933 * 23.48893 * 7 6 5 9 9 C 1.55000 * 110.61448 * 260.52114 * 7 6 5 10 10 C 1.54818 * 102.09030 * 204.48157 * 9 7 6 11 11 C 1.54097 * 104.18808 * 20.87976 * 10 9 7 12 12 H 1.08998 * 110.00923 * 242.53664 * 11 10 9 13 13 C 1.50698 * 109.87664 * 121.45641 * 11 10 9 14 14 H 1.08001 * 120.00294 * 0.71429 * 13 11 10 15 15 C 1.37887 * 119.99818 * 180.71738 * 13 11 10 16 16 N 1.31509 * 120.00164 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99536 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47222 * 90.00096 * 17 15 13 19 19 H 1.48509 * 109.46786 * 209.99772 * 17 15 13 20 20 H 1.48498 * 109.47367 * 329.99450 * 17 15 13 21 21 O 1.43745 * 107.29442 * 2.03270 * 11 10 9 22 22 C 1.38228 * 119.99442 * 0.24948 * 6 5 4 23 23 C 1.38232 * 120.00422 * 359.49813 * 22 6 5 24 24 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46733 * 300.00020 * 1 2 3 26 26 H 1.08998 * 109.47577 * 59.99699 * 1 2 3 27 27 H 1.08998 * 109.46555 * 239.99837 * 2 1 3 28 28 H 1.09000 * 109.46738 * 120.00655 * 2 1 3 29 29 H 1.08000 * 119.99632 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.99966 * 180.02562 * 5 4 3 31 31 H 1.08996 * 110.90766 * 86.28608 * 9 7 6 32 32 H 1.09001 * 110.94010 * 322.68627 * 9 7 6 33 33 H 1.09004 * 110.48564 * 262.20686 * 10 9 7 34 34 H 1.08989 * 110.60109 * 139.61789 * 10 9 7 35 35 H 0.96998 * 120.00066 * 179.97438 * 16 15 13 36 36 H 1.08007 * 119.99925 * 179.72625 * 22 6 5 37 37 H 1.08002 * 120.00236 * 180.25342 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9544 4.0272 -0.0001 7 6 3.4567 5.4480 0.0001 8 1 3.9683 5.6753 0.9353 9 6 2.2895 6.4395 -0.2387 10 6 3.0236 7.6689 -0.8275 11 6 4.3536 7.0973 -1.3557 12 1 5.1908 7.5455 -0.8206 13 6 4.4809 7.3758 -2.8313 14 1 3.7020 7.9170 -3.3479 15 6 5.5917 6.9395 -3.5219 16 7 6.5404 6.2808 -2.8928 17 14 5.7497 7.2853 -5.3508 18 1 6.4423 8.5835 -5.5511 19 1 6.5350 6.2010 -5.9935 20 1 4.3976 7.3460 -5.9617 21 8 4.3301 5.6785 -1.1263 22 6 2.7185 3.3775 -1.1971 23 6 2.2622 2.0726 -1.1971 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0833 1.5631 2.1324 30 1 2.9045 3.8844 2.1324 31 1 1.7967 6.6934 0.6997 32 1 1.5742 6.0341 -0.9544 33 1 3.2090 8.4107 -0.0506 34 1 2.4463 8.1066 -1.6417 35 1 7.3216 5.9736 -3.3787 36 1 2.8942 3.8881 -2.1325 37 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309449802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:14 Heat of formation + Delta-G solvation = -39.723381 kcal Electronic energy + Delta-G solvation = -17556.033466 eV Core-core repulsion = 14876.338312 eV Total energy + Delta-G solvation = -2679.695155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36770 -37.75368 -34.14309 -32.52123 -30.89355 -30.48738 -30.09207 -27.46760 -24.79471 -23.14475 -22.36185 -21.30068 -20.02396 -19.78789 -16.90414 -15.88836 -15.54094 -14.95655 -14.72738 -14.34447 -13.87255 -13.68677 -13.36122 -13.23333 -12.94610 -12.72876 -12.35591 -12.01300 -11.74892 -11.53654 -11.15713 -10.99144 -10.91391 -10.64654 -10.55648 -10.36669 -10.19927 -9.99995 -9.75139 -9.15946 -8.56567 -8.51332 -8.17808 -7.89289 -5.98603 -4.11739 1.69900 1.81929 3.31221 3.38200 3.41190 4.11056 4.43518 4.86943 4.94918 5.02120 5.32023 5.33283 5.36914 5.44115 5.56317 5.60268 5.63388 5.77928 5.80307 5.82696 5.88846 6.10841 6.14819 6.21355 6.29852 6.37681 6.41742 6.55104 6.67685 6.80222 6.81590 6.85820 6.96759 7.21020 7.42265 7.57170 7.89908 8.26440 8.56089 9.02076 9.58844 11.08693 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.005736 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.699133 B = 4880.132973 C = 5430.158368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.066 4.066 7 C 0.100 3.900 8 H 0.057 0.943 9 C -0.139 4.139 10 C -0.146 4.146 11 C 0.203 3.797 12 H 0.026 0.974 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.078 3.922 16 N -0.862 5.862 17 Si 0.890 3.110 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.342 6.342 22 C -0.084 4.084 23 C -0.123 4.123 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.261 0.739 36 H 0.133 0.867 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 -8.433 7.051 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.143 4.143 5 C -0.134 4.134 6 C -0.066 4.066 7 C 0.041 3.959 8 H 0.075 0.925 9 C -0.177 4.177 10 C -0.184 4.184 11 C 0.147 3.853 12 H 0.044 0.956 13 C -0.571 4.571 14 H 0.080 0.920 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 O -0.261 6.261 22 C -0.102 4.102 23 C -0.141 4.141 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.572 -8.674 6.909 14.649 hybrid contribution 0.119 0.338 -0.841 0.914 sum -9.453 -8.336 6.069 13.988 Atomic orbital electron populations 1.21745 0.95103 1.01213 1.02214 1.20486 0.95873 0.93148 1.02391 1.19784 1.00464 0.95940 0.93389 1.20818 1.01576 0.94862 0.97072 1.20909 1.00447 0.94711 0.97375 1.19874 0.97882 0.95734 0.93120 1.21767 0.90941 0.90028 0.93123 0.92535 1.23063 0.97952 0.96614 1.00055 1.23065 0.99262 0.96645 0.99441 1.20299 0.90532 0.78390 0.96059 0.95636 1.21181 1.05190 1.37261 0.93472 0.91981 1.25082 0.95517 0.94002 0.98225 1.70039 1.08413 1.35463 1.35903 0.86654 0.78233 0.77905 0.85512 1.20541 1.21104 1.19768 1.89318 1.64578 1.26892 1.45347 1.21170 0.95983 0.94018 0.99006 1.21016 1.00799 0.95129 0.97150 0.92793 0.92688 0.92552 0.91332 0.91460 0.86743 0.86506 0.92225 0.91385 0.93108 0.91399 0.92948 0.84885 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.08 -0.89 6.06 -27.88 -0.17 -1.06 16 3 C -0.10 -1.35 5.13 -104.63 -0.54 -1.89 16 4 C -0.13 -1.77 9.70 -39.59 -0.38 -2.16 16 5 C -0.12 -1.85 9.70 -39.58 -0.38 -2.23 16 6 C -0.07 -1.24 5.06 -104.62 -0.53 -1.77 16 7 C 0.10 2.08 3.54 -26.83 -0.10 1.98 16 8 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 9 C -0.14 -2.61 6.57 -24.72 -0.16 -2.77 16 10 C -0.15 -3.07 6.63 -25.20 -0.17 -3.24 16 11 C 0.20 5.29 3.26 -27.31 -0.09 5.20 16 12 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 13 C -0.53 -15.06 8.78 -34.44 -0.30 -15.36 16 14 H 0.06 1.70 7.33 -52.49 -0.38 1.31 16 15 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 16 N -0.86 -25.93 12.92 55.43 0.72 -25.21 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 O -0.34 -8.99 9.57 -35.23 -0.34 -9.32 16 22 C -0.08 -1.59 9.38 -39.59 -0.37 -1.96 16 23 C -0.12 -1.96 9.70 -39.58 -0.38 -2.34 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.41 7.40 -51.94 -0.38 1.03 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 2.80 7.64 -52.48 -0.40 2.40 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -30.78 308.19 -9.09 -39.86 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.79 Total: 0.05 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -3.30 Total: -26.51 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.72 Total: -25.21 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.34 Total: -9.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.78 -9.09 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309449802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.141 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds