Wall clock time and date at job start Mon Mar 30 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47080 * 2 1 4 4 C 1.38236 * 120.00138 * 90.00408 * 3 2 1 5 5 C 1.38228 * 120.00023 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99701 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.67933 * 23.48893 * 7 6 5 9 9 C 1.55000 * 110.61448 * 260.52114 * 7 6 5 10 10 C 1.54818 * 102.09030 * 204.48157 * 9 7 6 11 11 C 1.54097 * 104.18808 * 20.87976 * 10 9 7 12 12 H 1.08998 * 110.00923 * 242.53664 * 11 10 9 13 13 C 1.50698 * 109.87664 * 121.45641 * 11 10 9 14 14 H 1.08001 * 120.00294 * 0.71429 * 13 11 10 15 15 C 1.37887 * 119.99818 * 180.71738 * 13 11 10 16 16 N 1.31509 * 120.00164 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99536 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47222 * 90.00096 * 17 15 13 19 19 H 1.48509 * 109.46786 * 209.99772 * 17 15 13 20 20 H 1.48498 * 109.47367 * 329.99450 * 17 15 13 21 21 O 1.43745 * 107.29442 * 2.03270 * 11 10 9 22 22 C 1.38228 * 119.99442 * 0.24948 * 6 5 4 23 23 C 1.38232 * 120.00422 * 359.49813 * 22 6 5 24 24 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46733 * 300.00020 * 1 2 3 26 26 H 1.08998 * 109.47577 * 59.99699 * 1 2 3 27 27 H 1.08998 * 109.46555 * 239.99837 * 2 1 3 28 28 H 1.09000 * 109.46738 * 120.00655 * 2 1 3 29 29 H 1.08000 * 119.99632 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.99966 * 180.02562 * 5 4 3 31 31 H 1.08996 * 110.90766 * 86.28608 * 9 7 6 32 32 H 1.09001 * 110.94010 * 322.68627 * 9 7 6 33 33 H 1.09004 * 110.48564 * 262.20686 * 10 9 7 34 34 H 1.08989 * 110.60109 * 139.61789 * 10 9 7 35 35 H 0.96998 * 120.00066 * 179.97438 * 16 15 13 36 36 H 1.08007 * 119.99925 * 179.72625 * 22 6 5 37 37 H 1.08002 * 120.00236 * 180.25342 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9544 4.0272 -0.0001 7 6 3.4567 5.4480 0.0001 8 1 3.9683 5.6753 0.9353 9 6 2.2895 6.4395 -0.2387 10 6 3.0236 7.6689 -0.8275 11 6 4.3536 7.0973 -1.3557 12 1 5.1908 7.5455 -0.8206 13 6 4.4809 7.3758 -2.8313 14 1 3.7020 7.9170 -3.3479 15 6 5.5917 6.9395 -3.5219 16 7 6.5404 6.2808 -2.8928 17 14 5.7497 7.2853 -5.3508 18 1 6.4423 8.5835 -5.5511 19 1 6.5350 6.2010 -5.9935 20 1 4.3976 7.3460 -5.9617 21 8 4.3301 5.6785 -1.1263 22 6 2.7185 3.3775 -1.1971 23 6 2.2622 2.0726 -1.1971 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0833 1.5631 2.1324 30 1 2.9045 3.8844 2.1324 31 1 1.7967 6.6934 0.6997 32 1 1.5742 6.0341 -0.9544 33 1 3.2090 8.4107 -0.0506 34 1 2.4463 8.1066 -1.6417 35 1 7.3216 5.9736 -3.3787 36 1 2.8942 3.8881 -2.1325 37 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309449802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:13 Heat of formation + Delta-G solvation = -56.379733 kcal Electronic energy + Delta-G solvation = -17556.755740 eV Core-core repulsion = 14876.338312 eV Total energy + Delta-G solvation = -2680.417428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76233 -39.36471 -35.37306 -34.50484 -32.64046 -31.76443 -31.49825 -29.09945 -26.47687 -24.51675 -23.62993 -22.67698 -21.80508 -21.14633 -18.93287 -17.31274 -17.06120 -16.57538 -16.11016 -16.09803 -15.45693 -15.04690 -14.48427 -14.45278 -14.37758 -14.13899 -13.97562 -13.53272 -13.11198 -12.96147 -12.82711 -12.46752 -12.26711 -12.10469 -12.06635 -11.97954 -11.64388 -11.54596 -11.41961 -11.07424 -10.71510 -10.03019 -9.77210 -9.32561 -8.16075 -6.36992 0.44122 0.55553 1.38016 1.39873 1.50488 2.39050 2.82071 3.07427 3.59924 3.85500 3.96727 3.98590 4.05284 4.18345 4.23183 4.32998 4.51273 4.55644 4.57774 4.71783 4.76153 4.77223 4.81073 4.98503 5.08898 5.11624 5.12715 5.18975 5.21584 5.30326 5.42977 5.49857 5.57892 5.71651 5.75943 5.84989 6.16392 6.17480 6.54096 6.97333 7.38844 8.92064 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.005736 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.699133 B = 4880.132973 C = 5430.158368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.092 4.092 7 C 0.093 3.907 8 H 0.062 0.938 9 C -0.125 4.125 10 C -0.139 4.139 11 C 0.194 3.806 12 H -0.010 1.010 13 C -0.554 4.554 14 H 0.065 0.935 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.961 3.039 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.265 1.265 21 O -0.379 6.379 22 C -0.111 4.111 23 C -0.129 4.129 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.261 0.739 36 H 0.095 0.905 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 -9.803 8.125 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.137 4.137 5 C -0.134 4.134 6 C -0.092 4.092 7 C 0.034 3.966 8 H 0.080 0.920 9 C -0.163 4.163 10 C -0.177 4.177 11 C 0.138 3.862 12 H 0.008 0.992 13 C -0.592 4.592 14 H 0.083 0.917 15 C -0.180 4.180 16 N -0.541 5.541 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.189 1.189 21 O -0.299 6.299 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.347 -10.033 7.988 17.124 hybrid contribution 0.642 0.686 -1.086 1.436 sum -10.705 -9.347 6.903 15.800 Atomic orbital electron populations 1.21730 0.93955 1.02481 1.01875 1.20572 0.96719 0.90814 1.03668 1.20211 0.98637 0.97476 0.92553 1.21254 0.99747 0.94096 0.98566 1.21159 0.99794 0.95495 0.96922 1.19827 0.99930 0.95090 0.94339 1.22012 0.90838 0.92231 0.91479 0.91980 1.22993 0.97061 0.94687 1.01519 1.22950 0.96740 0.97917 1.00074 1.20215 0.92032 0.78927 0.95009 0.99193 1.21616 1.05382 1.37216 0.94942 0.91727 1.25978 0.95107 0.93694 1.03207 1.70189 1.09094 1.36955 1.37856 0.85538 0.78499 0.78047 0.79421 1.19252 1.20944 1.18897 1.89228 1.66340 1.26545 1.47753 1.20994 0.98606 0.95609 0.97768 1.21175 1.00604 0.94026 0.98903 0.90772 0.92474 0.93495 0.90818 0.89518 0.83083 0.84281 0.88397 0.91896 0.90839 0.91484 0.93021 0.88686 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.55 16 2 C -0.08 -1.47 6.06 29.85 0.18 -1.29 16 3 C -0.09 -2.29 5.13 -19.87 -0.10 -2.39 16 4 C -0.12 -2.98 9.70 22.27 0.22 -2.76 16 5 C -0.12 -3.44 9.70 22.27 0.22 -3.23 16 6 C -0.09 -3.47 5.06 -19.87 -0.10 -3.57 16 7 C 0.09 3.90 3.54 30.53 0.11 4.01 16 8 H 0.06 2.48 8.08 -2.39 -0.02 2.46 16 9 C -0.13 -4.62 6.57 31.90 0.21 -4.41 16 10 C -0.14 -5.86 6.63 31.59 0.21 -5.65 16 11 C 0.19 10.57 3.26 30.22 0.10 10.67 16 12 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 13 C -0.55 -32.40 8.78 25.60 0.22 -32.18 16 14 H 0.06 3.62 7.33 -2.91 -0.02 3.60 16 15 C 0.02 1.29 5.41 84.66 0.46 1.75 16 16 N -0.90 -56.64 12.92 21.45 0.28 -56.36 16 17 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 O -0.38 -20.92 9.57 -148.98 -1.43 -22.35 16 22 C -0.11 -4.38 9.38 22.27 0.21 -4.17 16 23 C -0.13 -4.07 9.70 22.27 0.22 -3.86 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.07 2.80 7.40 -2.39 -0.02 2.78 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.09 4.36 7.64 -2.91 -0.02 4.33 16 37 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.01 308.19 4.76 -65.25 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.03 Total: 14.83 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 2.86 Total: -48.64 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.43 Total: -22.35 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.01 4.76 -65.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309449802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.867 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds