Wall clock time and date at job start Mon Mar 30 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38236 * 120.00277 * 269.72803 * 3 2 1 5 5 C 1.38234 * 120.00406 * 179.81356 * 4 3 2 6 6 C 1.38236 * 119.99545 * 0.39221 * 5 4 3 7 7 C 1.50700 * 119.99777 * 179.83721 * 6 5 4 8 8 H 1.09001 * 109.86976 * 159.01139 * 7 6 5 9 9 C 1.54104 * 109.87871 * 280.02352 * 7 6 5 10 10 C 1.54817 * 104.18668 * 121.45474 * 9 7 6 11 11 C 1.54996 * 102.09398 * 20.87812 * 10 9 7 12 12 H 1.08998 * 110.61599 * 81.47555 * 11 10 9 13 13 C 1.50701 * 110.61854 * 204.31676 * 11 10 9 14 14 H 1.07999 * 119.99791 * 0.02562 * 13 11 10 15 15 C 1.37869 * 119.99770 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00581 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99659 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47338 * 59.99939 * 17 15 13 19 19 H 1.48501 * 109.47111 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46934 * 299.99793 * 17 15 13 21 21 O 1.43753 * 109.87855 * 37.85428 * 7 6 5 22 22 C 1.38226 * 120.00211 * 359.85598 * 6 5 4 23 23 C 1.38236 * 120.00380 * 359.96085 * 22 6 5 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 27 27 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 29 29 H 1.08004 * 119.99728 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.99857 * 180.23268 * 5 4 3 31 31 H 1.08997 * 110.48288 * 240.12740 * 9 7 6 32 32 H 1.08999 * 110.48612 * 2.77444 * 9 7 6 33 33 H 1.09000 * 110.90127 * 139.07988 * 10 9 7 34 34 H 1.09002 * 110.90404 * 262.64497 * 10 9 7 35 35 H 0.96993 * 120.00452 * 180.02562 * 16 15 13 36 36 H 1.08008 * 120.00171 * 179.97438 * 22 6 5 37 37 H 1.07994 * 120.00669 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7251 3.3752 -1.1972 6 6 2.9542 4.0273 0.0000 7 6 3.4559 5.4483 0.0000 8 1 3.2322 5.9202 0.9568 9 6 4.9763 5.4672 -0.2509 10 6 5.1395 6.3275 -1.5276 11 6 3.8153 7.1327 -1.5481 12 1 3.8779 7.9914 -0.8797 13 6 3.4857 7.5765 -2.9501 14 1 4.1442 7.3196 -3.7666 15 6 2.3435 8.3104 -3.1902 16 7 1.5419 8.6236 -2.1958 17 14 1.9346 8.8598 -4.9281 18 1 1.7858 7.6684 -5.8019 19 1 0.6642 9.6287 -4.9182 20 1 3.0290 9.7197 -5.4458 21 8 2.8374 6.1851 -1.0682 22 6 2.7233 3.3759 1.1971 23 6 2.2627 2.0725 1.1972 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.0927 1.5599 -2.1324 30 1 2.9057 3.8841 -2.1325 31 1 5.4957 5.9285 0.5890 32 1 5.3473 4.4566 -0.4217 33 1 5.9983 6.9932 -1.4408 34 1 5.2260 5.6974 -2.4128 35 1 0.7381 9.1396 -2.3648 36 1 2.9027 3.8852 2.1325 37 1 2.0827 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309449804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:16 Heat of formation + Delta-G solvation = -41.019405 kcal Electronic energy + Delta-G solvation = -17555.595992 eV Core-core repulsion = 14875.844638 eV Total energy + Delta-G solvation = -2679.751354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41898 -37.73969 -34.11635 -32.56087 -30.90595 -30.51719 -30.05963 -27.48883 -24.86345 -23.13117 -22.35857 -21.17289 -20.25301 -19.70773 -16.76544 -15.89675 -15.56777 -15.03375 -14.89576 -14.38409 -13.93016 -13.68642 -13.25598 -13.21093 -12.85298 -12.64336 -12.41630 -12.12796 -11.73311 -11.58865 -11.15142 -10.93500 -10.86770 -10.66422 -10.57448 -10.39096 -10.27236 -10.14102 -9.64110 -9.10890 -8.60547 -8.52448 -8.19729 -7.95568 -6.02852 -4.15802 1.70021 1.81003 3.32173 3.36896 3.39020 4.10714 4.41366 4.88713 4.96260 5.03968 5.29673 5.32990 5.37291 5.41754 5.57845 5.60696 5.61505 5.74236 5.79786 5.83036 5.89311 6.12754 6.18065 6.23548 6.29918 6.35572 6.40803 6.57528 6.65071 6.75874 6.80087 6.87610 6.95975 7.19320 7.41376 7.51502 7.87903 8.22809 8.57678 8.96466 9.55147 11.05239 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.005770 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.008151 B = 4851.785731 C = 5438.911353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.070 4.070 7 C 0.104 3.896 8 H 0.055 0.945 9 C -0.146 4.146 10 C -0.146 4.146 11 C 0.207 3.793 12 H 0.029 0.971 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.077 3.923 16 N -0.865 5.865 17 Si 0.893 3.107 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.348 6.348 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.263 0.737 36 H 0.117 0.883 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -13.286 5.603 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.070 4.070 7 C 0.045 3.955 8 H 0.073 0.927 9 C -0.183 4.183 10 C -0.184 4.184 11 C 0.152 3.848 12 H 0.047 0.953 13 C -0.567 4.567 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.501 5.501 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.268 6.268 22 C -0.135 4.135 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.567 -13.211 5.580 14.427 hybrid contribution -0.130 0.371 -0.733 0.832 sum 1.437 -12.840 4.847 13.800 Atomic orbital electron populations 1.21752 0.95032 1.01199 1.02415 1.20482 0.95994 0.93075 1.02235 1.19786 1.00463 0.96036 0.93387 1.21007 1.00825 0.95142 0.97136 1.21127 0.96841 0.93520 0.98872 1.20096 0.98071 0.95758 0.93080 1.21413 0.91647 0.88598 0.93850 0.92722 1.22946 0.96025 1.00307 0.99057 1.23210 1.00796 0.98463 0.95966 1.20690 0.81915 0.87170 0.94989 0.95335 1.20949 1.08961 1.34167 0.92598 0.91833 1.25085 0.95909 0.94842 0.97014 1.70011 1.12577 1.36486 1.31008 0.86662 0.77727 0.78810 0.84798 1.20034 1.21154 1.20051 1.89297 1.38559 1.50921 1.48000 1.20933 1.00228 0.94856 0.97452 1.20831 1.01417 0.94961 0.97072 0.92799 0.92609 0.92458 0.91519 0.91409 0.86613 0.85130 0.91949 0.91921 0.92173 0.91769 0.92771 0.86491 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.90 37.16 0.37 -1.13 16 2 C -0.08 -0.87 6.07 -27.88 -0.17 -1.04 16 3 C -0.10 -1.36 5.13 -104.62 -0.54 -1.90 16 4 C -0.12 -1.94 9.70 -39.58 -0.38 -2.32 16 5 C -0.09 -1.60 9.37 -39.58 -0.37 -1.97 16 6 C -0.07 -1.31 4.77 -104.63 -0.50 -1.81 16 7 C 0.10 2.17 3.63 -27.31 -0.10 2.07 16 8 H 0.05 1.11 8.03 -51.93 -0.42 0.69 16 9 C -0.15 -2.68 6.63 -25.20 -0.17 -2.85 16 10 C -0.15 -3.08 6.55 -24.72 -0.16 -3.24 16 11 C 0.21 5.40 3.08 -26.83 -0.08 5.32 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.53 -14.91 8.82 -34.44 -0.30 -15.21 16 14 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 15 C 0.08 2.21 5.44 -17.82 -0.10 2.11 16 16 N -0.86 -25.93 13.13 55.43 0.73 -25.20 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 O -0.35 -9.14 9.96 -35.23 -0.35 -9.49 16 22 C -0.12 -1.87 9.68 -39.59 -0.38 -2.25 16 23 C -0.12 -1.78 9.70 -39.58 -0.38 -2.16 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.13 2.66 7.73 -52.49 -0.41 2.25 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.64 8.05 -52.48 -0.42 1.22 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -30.64 309.18 -9.08 -39.73 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.83 Total: 0.28 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -3.27 Total: -26.40 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.73 Total: -25.20 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.35 Total: -9.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.64 -9.08 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309449804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.292 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds