Wall clock time and date at job start Mon Mar 30 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38236 * 120.00277 * 269.72803 * 3 2 1 5 5 C 1.38234 * 120.00406 * 179.81356 * 4 3 2 6 6 C 1.38236 * 119.99545 * 0.39221 * 5 4 3 7 7 C 1.50700 * 119.99777 * 179.83721 * 6 5 4 8 8 H 1.09001 * 109.86976 * 159.01139 * 7 6 5 9 9 C 1.54104 * 109.87871 * 280.02352 * 7 6 5 10 10 C 1.54817 * 104.18668 * 121.45474 * 9 7 6 11 11 C 1.54996 * 102.09398 * 20.87812 * 10 9 7 12 12 H 1.08998 * 110.61599 * 81.47555 * 11 10 9 13 13 C 1.50701 * 110.61854 * 204.31676 * 11 10 9 14 14 H 1.07999 * 119.99791 * 0.02562 * 13 11 10 15 15 C 1.37869 * 119.99770 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00581 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99659 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47338 * 59.99939 * 17 15 13 19 19 H 1.48501 * 109.47111 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46934 * 299.99793 * 17 15 13 21 21 O 1.43753 * 109.87855 * 37.85428 * 7 6 5 22 22 C 1.38226 * 120.00211 * 359.85598 * 6 5 4 23 23 C 1.38236 * 120.00380 * 359.96085 * 22 6 5 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 27 27 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 29 29 H 1.08004 * 119.99728 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.99857 * 180.23268 * 5 4 3 31 31 H 1.08997 * 110.48288 * 240.12740 * 9 7 6 32 32 H 1.08999 * 110.48612 * 2.77444 * 9 7 6 33 33 H 1.09000 * 110.90127 * 139.07988 * 10 9 7 34 34 H 1.09002 * 110.90404 * 262.64497 * 10 9 7 35 35 H 0.96993 * 120.00452 * 180.02562 * 16 15 13 36 36 H 1.08008 * 120.00171 * 179.97438 * 22 6 5 37 37 H 1.07994 * 120.00669 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7251 3.3752 -1.1972 6 6 2.9542 4.0273 0.0000 7 6 3.4559 5.4483 0.0000 8 1 3.2322 5.9202 0.9568 9 6 4.9763 5.4672 -0.2509 10 6 5.1395 6.3275 -1.5276 11 6 3.8153 7.1327 -1.5481 12 1 3.8779 7.9914 -0.8797 13 6 3.4857 7.5765 -2.9501 14 1 4.1442 7.3196 -3.7666 15 6 2.3435 8.3104 -3.1902 16 7 1.5419 8.6236 -2.1958 17 14 1.9346 8.8598 -4.9281 18 1 1.7858 7.6684 -5.8019 19 1 0.6642 9.6287 -4.9182 20 1 3.0290 9.7197 -5.4458 21 8 2.8374 6.1851 -1.0682 22 6 2.7233 3.3759 1.1971 23 6 2.2627 2.0725 1.1972 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.0927 1.5599 -2.1324 30 1 2.9057 3.8841 -2.1325 31 1 5.4957 5.9285 0.5890 32 1 5.3473 4.4566 -0.4217 33 1 5.9983 6.9932 -1.4408 34 1 5.2260 5.6974 -2.4128 35 1 0.7381 9.1396 -2.3648 36 1 2.9027 3.8852 2.1325 37 1 2.0827 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309449804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:15 Heat of formation + Delta-G solvation = -57.517125 kcal Electronic energy + Delta-G solvation = -17556.311387 eV Core-core repulsion = 14875.844638 eV Total energy + Delta-G solvation = -2680.466749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82105 -39.33083 -35.36646 -34.53127 -32.64362 -31.78334 -31.48649 -29.11394 -26.56699 -24.43298 -23.64253 -22.62904 -21.96343 -21.09625 -18.78451 -17.41211 -17.08285 -16.61127 -16.37046 -16.04528 -15.30494 -15.08971 -14.51032 -14.43537 -14.25358 -14.04495 -13.93695 -13.68396 -13.42852 -12.82054 -12.71864 -12.43025 -12.27409 -12.15749 -12.05678 -12.04528 -11.71826 -11.61263 -11.29427 -11.05994 -10.73887 -10.06894 -9.77477 -9.33399 -8.19371 -6.40111 0.44557 0.55332 1.38886 1.42429 1.50024 2.38629 2.81794 3.06471 3.65670 3.83629 3.93912 3.98371 4.04480 4.15960 4.22749 4.34902 4.50558 4.55901 4.57012 4.67372 4.75469 4.76282 4.85386 4.95731 5.05556 5.10192 5.11246 5.16371 5.23052 5.28287 5.41923 5.47503 5.58559 5.71246 5.75761 5.85467 6.13283 6.17360 6.56594 6.91333 7.35803 8.89568 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.005770 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.008151 B = 4851.785731 C = 5438.911353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.111 4.111 6 C -0.095 4.095 7 C 0.095 3.905 8 H 0.054 0.946 9 C -0.132 4.132 10 C -0.137 4.137 11 C 0.198 3.802 12 H -0.004 1.004 13 C -0.551 4.551 14 H 0.067 0.933 15 C 0.022 3.978 16 N -0.906 5.906 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.261 1.261 21 O -0.384 6.384 22 C -0.119 4.119 23 C -0.119 4.119 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -15.572 6.128 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.129 4.129 6 C -0.095 4.095 7 C 0.036 3.964 8 H 0.071 0.929 9 C -0.169 4.169 10 C -0.175 4.175 11 C 0.143 3.857 12 H 0.014 0.986 13 C -0.588 4.588 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.185 1.185 21 O -0.304 6.304 22 C -0.137 4.137 23 C -0.137 4.137 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.858 -15.506 6.106 16.768 hybrid contribution -0.233 0.997 -0.815 1.308 sum 1.625 -14.509 5.291 15.529 Atomic orbital electron populations 1.21751 0.94537 1.02454 1.01612 1.20564 0.96240 0.90824 1.03914 1.20219 0.98621 0.97611 0.92558 1.21194 1.00411 0.94080 0.98886 1.20990 0.99222 0.95024 0.97690 1.20010 1.00363 0.94814 0.94354 1.21631 0.93112 0.89495 0.92114 0.92864 1.22881 0.94663 1.00908 0.98454 1.23070 0.98720 0.98397 0.97310 1.20589 0.84530 0.87168 0.93421 0.98584 1.21395 1.09246 1.34355 0.93838 0.91519 1.25999 0.95719 0.94874 1.01427 1.70158 1.13148 1.37643 1.33429 0.85544 0.77835 0.78528 0.79327 1.19555 1.20737 1.18505 1.89200 1.39921 1.51402 1.49920 1.21161 0.99811 0.95771 0.96980 1.21246 0.99670 0.94166 0.98615 0.90569 0.92896 0.93831 0.89318 0.90343 0.85113 0.88343 0.89514 0.90243 0.90350 0.92174 0.92827 0.84703 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.90 71.98 0.71 -1.82 16 2 C -0.08 -1.40 6.07 29.85 0.18 -1.22 16 3 C -0.09 -2.31 5.13 -19.86 -0.10 -2.41 16 4 C -0.13 -3.93 9.70 22.27 0.22 -3.71 16 5 C -0.11 -4.25 9.37 22.27 0.21 -4.04 16 6 C -0.10 -3.60 4.77 -19.87 -0.09 -3.69 16 7 C 0.09 4.04 3.63 30.22 0.11 4.15 16 8 H 0.05 2.22 8.03 -2.39 -0.02 2.20 16 9 C -0.13 -4.78 6.63 31.59 0.21 -4.58 16 10 C -0.14 -5.83 6.55 31.90 0.21 -5.62 16 11 C 0.20 10.77 3.08 30.53 0.09 10.86 16 12 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 13 C -0.55 -32.10 8.82 25.60 0.23 -31.87 16 14 H 0.07 3.71 7.77 -2.91 -0.02 3.69 16 15 C 0.02 1.27 5.44 84.65 0.46 1.73 16 16 N -0.91 -56.45 13.13 21.44 0.28 -56.17 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 O -0.38 -21.18 9.96 -148.98 -1.48 -22.66 16 22 C -0.12 -3.63 9.68 22.27 0.22 -3.41 16 23 C -0.12 -3.03 9.70 22.27 0.22 -2.81 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 28 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.10 4.30 7.73 -2.91 -0.02 4.28 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.08 2.62 7.69 -2.39 -0.02 2.60 16 33 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.14 3.51 8.05 -2.91 -0.02 3.49 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -69.18 309.18 4.71 -64.47 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.02 Total: 15.85 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 2.86 Total: -48.44 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.48 Total: -22.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.18 4.71 -64.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309449804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.954 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds