Wall clock time and date at job start Mon Mar 30 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38233 * 119.99999 * 2 1 4 4 C 1.38239 * 119.99956 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99719 * 0.02562 * 4 3 2 6 6 C 1.50711 * 119.99893 * 179.97438 * 5 4 3 7 7 H 1.08997 * 110.54859 * 341.42928 * 6 5 4 8 8 C 1.55002 * 110.75100 * 104.39459 * 6 5 4 9 9 C 1.54809 * 102.08790 * 155.59129 * 8 6 5 10 10 C 1.54094 * 104.18747 * 339.11850 * 9 8 6 11 11 C 1.53004 * 110.00334 * 117.46708 * 10 9 8 12 12 C 1.50696 * 109.87868 * 238.54331 * 10 9 8 13 13 H 1.08005 * 120.00372 * 352.58489 * 12 10 9 14 14 C 1.37880 * 119.99958 * 172.58462 * 12 10 9 15 15 N 1.31521 * 120.00202 * 165.25003 * 14 12 10 16 16 Si 1.86797 * 120.00220 * 345.24486 * 14 12 10 17 17 H 1.48494 * 109.47310 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.46697 * 60.00390 * 16 14 12 19 19 H 1.48496 * 109.47413 * 300.00594 * 16 14 12 20 20 O 1.43737 * 107.29756 * 357.97267 * 10 9 8 21 21 C 1.38236 * 120.00229 * 0.25093 * 5 4 3 22 22 C 1.38227 * 120.00098 * 359.47248 * 21 5 4 23 23 H 1.09000 * 109.47236 * 89.99579 * 1 2 3 24 24 H 1.08997 * 109.47052 * 210.00038 * 1 2 3 25 25 H 1.09005 * 109.47090 * 329.99659 * 1 2 3 26 26 H 1.07995 * 120.00328 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.99717 * 179.97438 * 4 3 2 28 28 H 1.09000 * 110.90666 * 273.79024 * 8 6 5 29 29 H 1.08997 * 110.90563 * 37.36058 * 8 6 5 30 30 H 1.09000 * 110.48256 * 220.44080 * 9 8 6 31 31 H 1.08998 * 110.48706 * 97.79739 * 9 8 6 32 32 H 1.08993 * 109.47300 * 174.86451 * 11 10 9 33 33 H 1.09004 * 109.47111 * 294.86686 * 11 10 9 34 34 H 1.09001 * 109.46922 * 54.86133 * 11 10 9 35 35 H 0.97002 * 119.99739 * 354.88716 * 15 14 12 36 36 H 1.08002 * 120.00002 * 179.73321 * 21 5 4 37 37 H 1.07995 * 120.00407 * 180.27471 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7788 -0.0001 0.0005 7 1 6.1614 0.9674 -0.3245 8 6 6.3279 -0.3604 1.4045 9 6 7.7318 -0.9204 1.0696 10 6 7.6339 -1.3223 -0.4148 11 6 8.6157 -0.4949 -1.2470 12 6 7.9409 -2.7895 -0.5698 13 1 8.2988 -3.3585 0.2755 14 6 7.7647 -3.4054 -1.7907 15 7 8.2944 -4.5886 -2.0128 16 14 6.7738 -2.5596 -3.1293 17 1 6.7340 -3.4235 -4.3365 18 1 7.4098 -1.2618 -3.4707 19 1 5.3904 -2.3207 -2.6451 20 8 6.2871 -1.0569 -0.8414 21 6 3.5805 -1.1972 -0.0052 22 6 2.1982 -1.1972 0.0000 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0004 27 1 4.1205 2.1324 0.0001 28 1 6.4028 0.5273 2.0325 29 1 5.7089 -1.1206 1.8809 30 1 7.9524 -1.7912 1.6869 31 1 8.4920 -0.1515 1.2073 32 1 8.6054 -0.8479 -2.2781 33 1 8.3214 0.5543 -1.2191 34 1 9.6198 -0.6016 -0.8363 35 1 8.8700 -4.9952 -1.3462 36 1 4.1205 -2.1325 -0.0096 37 1 1.6582 -2.1325 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309460127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:57 Heat of formation + Delta-G solvation = -50.381696 kcal Electronic energy + Delta-G solvation = -18135.133704 eV Core-core repulsion = 15454.976370 eV Total energy + Delta-G solvation = -2680.157334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98476 -39.64113 -35.34629 -34.03823 -32.97840 -31.79349 -31.65208 -28.51166 -26.98057 -25.30963 -23.62964 -22.92762 -21.32450 -21.12141 -19.66686 -17.51432 -17.28282 -16.10944 -15.81129 -15.75158 -15.58710 -14.89123 -14.75556 -14.62393 -14.51290 -14.24066 -13.98399 -13.51927 -13.13805 -12.97326 -12.75177 -12.65134 -12.44752 -12.11478 -11.87100 -11.83001 -11.69693 -11.64079 -11.22437 -11.05496 -10.55492 -10.19727 -9.79166 -9.33867 -8.74205 -6.47810 0.40785 0.53679 1.47741 1.55420 1.84096 2.49996 2.78666 2.99866 3.45129 3.80350 3.93025 4.02385 4.08604 4.13576 4.21602 4.32827 4.50037 4.56015 4.62246 4.71577 4.75433 4.82067 4.87878 4.89045 4.95397 4.98372 5.02309 5.14174 5.20912 5.29200 5.31744 5.54731 5.58332 5.72701 5.79996 5.96378 6.02569 6.16168 6.33731 6.71236 7.33804 8.60775 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.007666 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.410591 B = 3651.502008 C = 4154.674089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.099 4.099 6 C 0.103 3.897 7 H 0.085 0.915 8 C -0.128 4.128 9 C -0.129 4.129 10 C 0.183 3.817 11 C -0.155 4.155 12 C -0.592 4.592 13 H 0.028 0.972 14 C -0.002 4.002 15 N -0.938 5.938 16 Si 1.102 2.898 17 H -0.312 1.312 18 H -0.253 1.253 19 H -0.271 1.271 20 O -0.390 6.390 21 C -0.114 4.114 22 C -0.137 4.137 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 15.320 5.438 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.128 4.128 5 C -0.099 4.099 6 C 0.046 3.954 7 H 0.103 0.897 8 C -0.165 4.165 9 C -0.167 4.167 10 C 0.145 3.855 11 C -0.213 4.213 12 C -0.629 4.629 13 H 0.046 0.954 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.929 3.071 17 H -0.241 1.241 18 H -0.178 1.178 19 H -0.197 1.197 20 O -0.312 6.312 21 C -0.132 4.132 22 C -0.155 4.155 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.171 0.829 27 H 0.163 0.837 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.577 15.018 3.787 20.596 hybrid contribution 1.400 -0.901 1.792 2.446 sum -12.177 14.117 5.579 19.460 Atomic orbital electron populations 1.20819 0.88892 1.03770 1.03068 1.20302 0.97724 0.92642 0.98728 1.21317 0.93580 0.98521 1.00643 1.21211 0.94937 0.97042 0.99590 1.19844 0.94184 0.94199 1.01647 1.22055 0.90429 0.92363 0.90528 0.89740 1.23012 0.95376 1.01387 0.96754 1.22841 0.97639 1.00051 0.96165 1.20124 0.80133 0.93499 0.91715 1.22416 0.99556 0.98806 1.00512 1.22194 1.47949 0.95741 0.96993 0.95385 1.26974 0.95870 0.95494 1.01791 1.70984 1.30809 1.18362 1.37252 0.83275 0.77066 0.74667 0.72085 1.24144 1.17797 1.19730 1.88865 1.30278 1.54549 1.57464 1.21042 0.94949 0.97903 0.99321 1.21225 0.93340 0.98992 1.01906 0.90457 0.91152 0.89776 0.82885 0.83664 0.87947 0.92474 0.93334 0.89902 0.94035 0.92097 0.92346 0.93602 0.88742 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.02 16 2 C -0.09 -2.23 5.88 -19.86 -0.12 -2.35 16 3 C -0.12 -2.72 9.70 22.27 0.22 -2.51 16 4 C -0.11 -2.83 9.68 22.27 0.22 -2.61 16 5 C -0.10 -3.30 5.08 -19.86 -0.10 -3.40 16 6 C 0.10 3.70 3.45 30.54 0.11 3.81 16 7 H 0.08 2.63 7.95 -2.39 -0.02 2.62 16 8 C -0.13 -4.28 6.57 31.90 0.21 -4.07 16 9 C -0.13 -5.07 6.27 31.58 0.20 -4.87 16 10 C 0.18 8.67 0.70 -11.17 -0.01 8.66 16 11 C -0.16 -6.64 8.31 71.98 0.60 -6.04 16 12 C -0.59 -34.64 8.64 25.60 0.22 -34.42 16 13 H 0.03 1.78 7.61 -2.91 -0.02 1.76 16 14 C 0.00 -0.10 5.35 84.65 0.45 0.35 16 15 N -0.94 -60.98 13.70 21.45 0.29 -60.68 16 16 Si 1.10 57.45 24.83 68.60 1.70 59.16 16 17 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 18 H -0.25 -11.95 5.63 99.48 0.56 -11.39 16 19 H -0.27 -14.05 6.75 99.48 0.67 -13.38 16 20 O -0.39 -18.15 6.18 -148.98 -0.92 -19.07 16 21 C -0.11 -4.14 9.25 22.27 0.21 -3.94 16 22 C -0.14 -4.05 9.70 22.27 0.22 -3.83 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 25 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 26 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 27 H 0.15 2.89 8.05 -2.91 -0.02 2.87 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.06 2.05 7.94 -2.39 -0.02 2.03 16 30 H 0.05 2.07 7.42 -2.39 -0.02 2.05 16 31 H 0.08 2.76 7.70 -2.39 -0.02 2.74 16 32 H 0.04 1.91 4.73 -2.39 -0.01 1.90 16 33 H 0.06 2.16 8.00 -2.39 -0.02 2.14 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.26 16.56 8.73 -92.71 -0.81 15.75 16 36 H 0.09 4.05 7.77 -2.91 -0.02 4.03 16 37 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -70.77 295.39 5.02 -65.76 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.81 Total: 11.07 kcal Atomic # 6 Polarization: -59.36 SS G_CDS: 3.13 Total: -56.24 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.29 Total: -60.68 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.92 Total: -19.07 kcal Atomic # 14 Polarization: 57.45 SS G_CDS: 1.70 Total: 59.16 kcal Total: -70.77 5.02 -65.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309460127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.377 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds