Wall clock time and date at job start Mon Mar 30 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38237 * 120.00180 * 2 1 4 4 C 1.38231 * 119.99930 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00472 * 359.95179 * 4 3 2 6 6 C 1.50696 * 120.00422 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.90064 * 270.93446 * 6 5 4 8 8 C 1.54384 * 109.83063 * 149.99687 * 6 5 4 9 9 C 1.55304 * 102.25492 * 219.12939 * 8 6 5 10 10 C 1.54944 * 100.97800 * 34.11596 * 9 8 6 11 11 H 1.08996 * 110.31114 * 82.48962 * 10 9 8 12 12 C 1.50702 * 110.31104 * 204.65934 * 10 9 8 13 13 H 1.08003 * 119.99649 * 0.02562 * 12 10 9 14 14 C 1.37879 * 120.00303 * 180.02562 * 12 10 9 15 15 N 1.31509 * 119.99892 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00047 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47223 * 59.99898 * 16 14 12 18 18 H 1.48496 * 109.47017 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47040 * 299.99909 * 16 14 12 20 20 O 1.43240 * 109.82832 * 31.86946 * 6 5 4 21 21 C 1.38241 * 119.99738 * 0.27896 * 5 4 3 22 22 C 1.38238 * 119.99886 * 359.51041 * 21 5 4 23 23 H 1.09004 * 109.46840 * 90.00328 * 1 2 3 24 24 H 1.08998 * 109.47415 * 210.00319 * 1 2 3 25 25 H 1.09003 * 109.47419 * 330.00793 * 1 2 3 26 26 H 1.08003 * 120.00005 * 359.97176 * 3 2 1 27 27 H 1.08005 * 119.99674 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.46961 * 299.06958 * 7 6 5 29 29 H 1.09010 * 109.47012 * 59.06275 * 7 6 5 30 30 H 1.08997 * 109.47778 * 179.06277 * 7 6 5 31 31 H 1.09006 * 110.84230 * 100.94060 * 8 6 5 32 32 H 1.08991 * 110.84918 * 337.32624 * 8 6 5 33 33 H 1.09002 * 111.12488 * 152.05572 * 9 8 6 34 34 H 1.08995 * 111.12730 * 276.17567 * 9 8 6 35 35 H 0.97001 * 119.99830 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.00053 * 179.73349 * 21 5 4 37 37 H 1.07992 * 120.00209 * 180.25306 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0021 6 6 5.7786 -0.0001 0.0032 7 6 6.3005 0.0222 -1.4348 8 6 6.3018 -1.2571 0.7309 9 6 7.5205 -0.7003 1.5162 10 6 7.0230 0.7262 1.8601 11 1 6.3881 0.7022 2.7457 12 6 8.1936 1.6497 2.0794 13 1 9.2021 1.2746 1.9865 14 6 7.9771 2.9735 2.3986 15 7 6.7490 3.4303 2.5112 16 14 9.4281 4.1183 2.6696 17 1 10.2499 4.1769 1.4342 18 1 8.9308 5.4785 2.9978 19 1 10.2570 3.6096 3.7919 20 8 6.2640 1.1449 0.7141 21 6 3.5805 -1.1972 -0.0027 22 6 2.1981 -1.1972 0.0011 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8901 0.5137 26 1 1.6582 2.1325 -0.0005 27 1 4.1205 2.1324 0.0001 28 1 5.9551 -0.8680 -1.9605 29 1 5.9278 0.9117 -1.9429 30 1 7.3903 0.0388 -1.4257 31 1 6.6157 -2.0171 0.0153 32 1 5.5487 -1.6523 1.4126 33 1 7.7040 -1.2810 2.4202 34 1 8.4101 -0.6651 0.8875 35 1 6.5967 4.3617 2.7354 36 1 4.1204 -2.1324 -0.0059 37 1 1.6581 -2.1324 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309461783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:57 Heat of formation + Delta-G solvation = -51.902802 kcal Electronic energy + Delta-G solvation = -18027.559772 eV Core-core repulsion = 15347.336478 eV Total energy + Delta-G solvation = -2680.223294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04279 -39.26443 -35.20387 -33.94561 -32.81559 -31.58338 -31.55228 -28.38969 -27.54077 -25.14921 -23.60627 -22.76526 -21.84603 -20.56739 -18.62209 -17.70279 -16.79297 -16.60722 -15.95615 -15.81479 -15.47331 -14.78076 -14.55412 -14.33481 -14.14760 -14.01382 -13.64833 -13.50662 -13.17600 -12.96116 -12.77915 -12.65963 -12.42739 -12.38718 -12.19930 -12.04894 -11.78194 -11.38698 -11.35182 -10.96609 -10.69789 -9.86822 -9.74264 -9.31078 -8.14548 -6.35780 0.49593 0.57900 1.39003 1.42339 1.49752 2.40098 2.90255 3.02990 3.52908 3.78557 3.99282 4.07443 4.11295 4.16140 4.24600 4.44200 4.56262 4.62384 4.66395 4.71737 4.81452 4.88172 4.93023 4.95678 4.99342 5.07179 5.13225 5.15040 5.25868 5.32941 5.40863 5.56506 5.64538 5.74752 5.76645 5.87222 6.19114 6.21799 6.63697 7.09826 7.40660 8.93005 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.006563 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.869521 B = 4265.161618 C = 4839.884238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.101 4.101 6 C 0.117 3.883 7 C -0.133 4.133 8 C -0.132 4.132 9 C -0.139 4.139 10 C 0.204 3.796 11 H -0.016 1.016 12 C -0.554 4.554 13 H 0.066 0.934 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.263 1.263 20 O -0.380 6.380 21 C -0.117 4.117 22 C -0.125 4.125 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -10.451 -6.375 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.154 4.154 4 C -0.132 4.132 5 C -0.101 4.101 6 C 0.077 3.923 7 C -0.190 4.190 8 C -0.169 4.169 9 C -0.177 4.177 10 C 0.149 3.851 11 H 0.001 0.999 12 C -0.592 4.592 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.540 5.540 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.188 1.188 20 O -0.300 6.300 21 C -0.134 4.134 22 C -0.143 4.143 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.144 0.856 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.026 -10.092 -6.391 14.972 hybrid contribution 0.872 1.174 0.445 1.529 sum -8.154 -8.918 -5.946 13.468 Atomic orbital electron populations 1.20795 0.88840 1.03516 1.03165 1.20269 0.97705 0.92586 0.99340 1.21191 0.93284 0.98876 1.02017 1.20996 0.94831 0.97923 0.99482 1.20354 0.95552 0.93957 1.00223 1.21049 0.89442 0.88005 0.93812 1.21939 1.00905 1.01915 0.94262 1.23186 0.97359 0.96879 0.99490 1.23193 0.98029 0.96334 1.00113 1.20349 0.88989 0.91420 0.84356 0.99872 1.21519 0.92747 0.95912 1.48986 0.91635 1.25977 0.98310 1.00073 0.93627 1.70191 1.21757 1.15330 1.46747 0.85587 0.79295 0.77545 0.79022 1.19472 1.20956 1.18750 1.88757 1.70845 1.29195 1.41173 1.21239 0.94833 0.97142 1.00218 1.21321 0.93631 0.98470 1.00864 0.90008 0.90038 0.91475 0.85636 0.89161 0.89547 0.94056 0.92592 0.87853 0.90705 0.90595 0.91360 0.93102 0.83939 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 10.01 71.23 0.71 -1.27 16 2 C -0.10 -2.69 5.88 -19.87 -0.12 -2.81 16 3 C -0.14 -4.54 9.70 22.27 0.22 -4.33 16 4 C -0.11 -4.69 9.36 22.27 0.21 -4.48 16 5 C -0.10 -3.85 4.82 -19.87 -0.10 -3.94 16 6 C 0.12 4.77 1.08 -11.07 -0.01 4.76 16 7 C -0.13 -4.72 8.71 71.98 0.63 -4.09 16 8 C -0.13 -4.57 5.04 31.86 0.16 -4.41 16 9 C -0.14 -5.76 6.53 32.05 0.21 -5.55 16 10 C 0.20 11.11 3.22 30.51 0.10 11.20 16 11 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 12 C -0.55 -32.26 8.80 25.60 0.23 -32.04 16 13 H 0.07 3.63 7.76 -2.91 -0.02 3.61 16 14 C 0.02 1.29 5.43 84.66 0.46 1.75 16 15 N -0.90 -56.46 13.05 21.45 0.28 -56.18 16 16 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 20 O -0.38 -20.51 9.11 -148.98 -1.36 -21.87 16 21 C -0.12 -3.49 8.75 22.27 0.19 -3.30 16 22 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 25 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 26 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 27 H 0.09 4.37 7.55 -2.91 -0.02 4.34 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.79 7.82 -2.38 -0.02 2.77 16 32 H 0.07 2.47 6.86 -2.39 -0.02 2.46 16 33 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.07 2.76 8.04 -2.39 -0.02 2.75 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.14 3.48 6.83 -2.91 -0.02 3.46 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.54 304.36 5.08 -65.46 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.03 Total: 16.94 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 3.10 Total: -51.52 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.36 Total: -21.87 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.54 5.08 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.556 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds