Wall clock time and date at job start Mon Mar 30 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 119.99886 * 2 1 4 4 C 1.38243 * 120.00069 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.09581 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.81972 * 89.29750 * 6 5 4 8 8 C 1.54378 * 109.83351 * 210.18627 * 6 5 4 9 9 C 1.55444 * 102.18920 * 140.81802 * 8 6 5 10 10 C 1.54956 * 100.98951 * 325.96165 * 9 8 6 11 11 H 1.08998 * 110.30798 * 277.47584 * 10 9 8 12 12 C 1.50699 * 110.39400 * 155.34985 * 10 9 8 13 13 H 1.08006 * 119.99880 * 2.78571 * 12 10 9 14 14 C 1.37878 * 119.99899 * 182.78381 * 12 10 9 15 15 N 1.31512 * 119.99830 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99758 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47249 * 60.00236 * 16 14 12 18 18 H 1.48499 * 109.46810 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47249 * 300.00076 * 16 14 12 20 20 O 1.43237 * 109.82899 * 328.41450 * 6 5 4 21 21 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 22 22 C 1.38234 * 120.00242 * 180.08946 * 2 1 3 23 23 H 1.08997 * 109.47341 * 269.91120 * 1 2 3 24 24 H 1.09007 * 109.47270 * 29.90821 * 1 2 3 25 25 H 1.09000 * 109.46792 * 149.90515 * 1 2 3 26 26 H 1.08001 * 120.00365 * 0.06714 * 3 2 1 27 27 H 1.08000 * 119.99728 * 180.36512 * 4 3 2 28 28 H 1.09002 * 109.47007 * 60.70586 * 7 6 5 29 29 H 1.09004 * 109.46821 * 180.69941 * 7 6 5 30 30 H 1.08996 * 109.47275 * 300.69640 * 7 6 5 31 31 H 1.08999 * 110.84934 * 259.06233 * 8 6 5 32 32 H 1.09002 * 110.84790 * 22.68163 * 8 6 5 33 33 H 1.08995 * 111.15129 * 208.01099 * 9 8 6 34 34 H 1.08998 * 111.09726 * 83.88991 * 9 8 6 35 35 H 0.96999 * 119.99379 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.00371 * 179.97438 * 21 5 4 37 37 H 1.08000 * 119.99729 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0009 7 6 6.2975 0.0159 1.4384 8 6 6.3025 -1.2544 -0.7327 9 6 7.5217 -0.6922 -1.5160 10 6 7.0234 0.7358 -1.8530 11 1 6.3889 0.7159 -2.7389 12 6 8.1921 1.6626 -2.0684 13 1 9.2008 1.2793 -2.0228 14 6 7.9735 2.9998 -2.3238 15 7 6.7452 3.4665 -2.3788 16 14 9.4221 4.1484 -2.5915 17 1 10.2123 3.6846 -3.7601 18 1 8.9229 5.5237 -2.8454 19 1 10.2827 4.1503 -1.3814 20 8 6.2646 1.1487 -0.7053 21 6 3.5806 -1.1971 -0.0024 22 6 2.1982 -1.1971 -0.0019 23 1 -0.3634 -0.0016 1.0276 24 1 -0.3634 0.8908 -0.5124 25 1 -0.3633 -0.8891 -0.5153 26 1 1.6582 2.1325 0.0011 27 1 4.1205 2.1325 0.0065 28 1 5.9476 -0.8747 1.9605 29 1 7.3874 0.0284 1.4316 30 1 5.9272 0.9052 1.9483 31 1 6.6159 -2.0169 -0.0196 32 1 5.5500 -1.6471 -1.4165 33 1 7.7060 -1.2681 -2.4229 34 1 8.4112 -0.6596 -0.8868 35 1 6.5915 4.4073 -2.5581 36 1 4.1205 -2.1325 -0.0040 37 1 1.6582 -2.1324 -0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309461786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:02 Heat of formation + Delta-G solvation = -34.669496 kcal Electronic energy + Delta-G solvation = -18038.107041 eV Core-core repulsion = 15358.631039 eV Total energy + Delta-G solvation = -2679.476002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57059 -37.75421 -33.46304 -32.16419 -31.20932 -30.23760 -30.01975 -26.55110 -26.29398 -23.40814 -22.24120 -21.34088 -20.11439 -19.09827 -16.49348 -16.22987 -15.19268 -14.71730 -14.57926 -14.43077 -13.88019 -13.50221 -13.18006 -12.98080 -12.52553 -12.42147 -12.18419 -11.83277 -11.76885 -11.67575 -11.42548 -11.01951 -10.88424 -10.71927 -10.52570 -10.30634 -10.13247 -9.86798 -9.72307 -9.07154 -8.55074 -8.44743 -8.03740 -7.91067 -5.97716 -4.10765 1.77637 1.88406 3.33558 3.38199 3.40413 4.20444 4.44241 4.87957 5.11487 5.19883 5.31517 5.42786 5.44450 5.56153 5.61302 5.65203 5.69182 5.91985 5.94091 5.98493 6.14233 6.16637 6.24784 6.37590 6.45712 6.52998 6.60563 6.65600 6.66765 6.77282 6.87227 6.96265 7.05597 7.23195 7.50141 7.62954 7.91473 8.29349 8.66260 9.06261 9.59789 11.09419 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.006588 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.445797 B = 4248.884386 C = 4825.500399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.081 4.081 5 C -0.077 4.077 6 C 0.132 3.868 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.147 4.147 10 C 0.212 3.788 11 H 0.026 0.974 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.079 3.921 15 N -0.861 5.861 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.341 6.341 21 C -0.118 4.118 22 C -0.131 4.131 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.134 0.866 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.261 0.739 36 H 0.118 0.882 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 -8.112 5.429 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.078 4.078 6 C 0.091 3.909 7 C -0.196 4.196 8 C -0.183 4.183 9 C -0.185 4.185 10 C 0.157 3.843 11 H 0.043 0.957 12 C -0.572 4.572 13 H 0.080 0.920 14 C -0.127 4.127 15 N -0.497 5.497 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.260 6.260 21 C -0.136 4.136 22 C -0.149 4.149 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.134 0.866 27 H 0.152 0.848 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.290 -7.734 5.451 12.580 hybrid contribution 0.751 0.464 -0.231 0.913 sum -7.539 -7.270 5.220 11.702 Atomic orbital electron populations 1.20725 0.91905 1.02246 1.01671 1.19809 0.95500 0.93447 1.01492 1.21027 0.94425 0.97072 1.01882 1.21176 0.93356 0.99070 0.96265 1.20378 0.96223 0.92978 0.98201 1.20684 0.88239 0.88716 0.93233 1.21980 1.01434 1.00890 0.95334 1.23235 0.98749 0.97161 0.99202 1.23347 0.96898 0.99251 0.98970 1.20499 0.90059 0.88536 0.85188 0.95685 1.21063 0.91946 0.93837 1.50365 0.92034 1.25056 0.95475 0.98282 0.93879 1.70033 1.19309 1.14288 1.46106 0.86714 0.82899 0.79926 0.78724 1.20164 1.21222 1.20127 1.88848 1.70312 1.25669 1.41215 1.20984 0.93876 0.97593 1.01111 1.20844 0.94079 0.96986 1.02971 0.91776 0.91895 0.92061 0.86641 0.84841 0.93116 0.91999 0.92539 0.91673 0.91428 0.92065 0.91612 0.92957 0.86452 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.10 -1.52 5.88 -104.62 -0.62 -2.13 16 3 C -0.13 -2.09 9.70 -39.58 -0.38 -2.48 16 4 C -0.08 -1.57 9.36 -39.58 -0.37 -1.94 16 5 C -0.08 -1.47 4.82 -104.63 -0.50 -1.98 16 6 C 0.13 2.68 1.08 -91.05 -0.10 2.58 16 7 C -0.14 -2.50 8.71 37.16 0.32 -2.18 16 8 C -0.15 -2.66 5.05 -24.71 -0.12 -2.78 16 9 C -0.15 -3.07 6.54 -24.40 -0.16 -3.23 16 10 C 0.21 5.53 3.27 -26.85 -0.09 5.44 16 11 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.53 -15.05 8.81 -34.44 -0.30 -15.35 16 13 H 0.06 1.68 7.77 -52.48 -0.41 1.27 16 14 C 0.08 2.24 5.42 -17.82 -0.10 2.15 16 15 N -0.86 -25.57 12.93 55.43 0.72 -24.86 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 O -0.34 -8.75 8.94 -35.23 -0.31 -9.06 16 21 C -0.12 -1.91 8.75 -39.59 -0.35 -2.26 16 22 C -0.13 -1.93 9.70 -39.58 -0.38 -2.31 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.13 2.90 7.55 -52.49 -0.40 2.50 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 32 H 0.07 1.19 6.86 -51.93 -0.36 0.83 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.12 1.68 6.83 -52.49 -0.36 1.32 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -30.42 304.14 -8.53 -38.94 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.70 Total: 1.30 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -2.79 Total: -27.32 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.72 Total: -24.86 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.31 Total: -9.06 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.42 -8.53 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.271 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds